Wall clock time and date at job start Wed Apr 1 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47573 * 305.37668 * 3 2 1 5 5 C 1.53006 * 109.47073 * 185.38200 * 3 2 1 6 6 C 1.50694 * 109.47240 * 64.99650 * 5 3 2 7 7 C 1.38261 * 119.99810 * 90.00216 * 6 5 3 8 8 C 1.38207 * 119.99895 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.00076 * 0.25890 * 8 7 6 10 10 C 1.38212 * 119.99577 * 359.46188 * 9 8 7 11 11 C 1.50703 * 119.99631 * 180.29853 * 10 9 8 12 12 C 1.38208 * 120.00288 * 269.97939 * 6 5 3 13 13 C 1.50704 * 109.47477 * 65.37912 * 3 2 1 14 14 O 1.21284 * 119.99472 * 35.78350 * 13 3 2 15 15 N 1.34771 * 120.00030 * 215.78497 * 13 3 2 16 16 C 1.47869 * 126.94952 * 4.75316 * 15 13 3 17 17 C 1.56013 * 105.10898 * 181.97542 * 16 15 13 18 18 H 1.08994 * 116.25128 * 158.83000 * 17 16 15 19 19 C 1.57090 * 99.60360 * 32.80821 * 17 16 15 20 20 C 1.49295 * 126.94268 * 184.43894 * 15 13 3 21 21 H 1.08996 * 116.14994 * 16.71950 * 20 15 13 22 22 C 1.56024 * 104.08904 * 246.72218 * 20 15 13 23 23 N 1.47359 * 105.14559 * 288.60579 * 22 20 15 24 24 C 1.36938 * 126.78856 * 182.06656 * 23 22 20 25 25 H 1.08004 * 120.00145 * 180.28351 * 24 23 22 26 26 C 1.38818 * 119.99989 * 0.28211 * 24 23 22 27 27 N 1.31617 * 119.99954 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99934 * 180.02562 * 26 24 23 29 29 H 1.48508 * 109.47173 * 359.97438 * 28 26 24 30 30 H 1.48497 * 109.47222 * 119.99896 * 28 26 24 31 31 H 1.48505 * 109.47123 * 239.99916 * 28 26 24 32 32 H 1.09000 * 109.47087 * 173.97034 * 1 2 3 33 33 H 1.09000 * 109.47322 * 293.97157 * 1 2 3 34 34 H 1.09000 * 109.47088 * 53.97075 * 1 2 3 35 35 H 1.09000 * 109.47109 * 239.99619 * 2 1 3 36 36 H 1.09002 * 109.46837 * 120.00214 * 2 1 3 37 37 H 1.09002 * 109.46957 * 304.99862 * 5 3 2 38 38 H 1.09000 * 109.46938 * 185.00525 * 5 3 2 39 39 H 1.07996 * 119.99893 * 359.97438 * 7 6 5 40 40 H 1.08000 * 120.00204 * 179.97438 * 8 7 6 41 41 H 1.07996 * 119.99902 * 179.72078 * 9 8 7 42 42 H 1.08999 * 109.47191 * 270.23689 * 11 10 9 43 43 H 1.09001 * 109.47201 * 30.23929 * 11 10 9 44 44 H 1.09001 * 109.46645 * 150.23681 * 11 10 9 45 45 H 1.08001 * 119.99940 * 359.97438 * 12 6 5 46 46 H 1.09001 * 110.31357 * 300.88793 * 16 15 13 47 47 H 1.09007 * 110.31255 * 62.96551 * 16 15 13 48 48 H 1.09003 * 112.36824 * 64.27269 * 19 17 16 49 49 H 1.09004 * 112.36572 * 191.62577 * 19 17 16 50 50 H 1.08998 * 110.31566 * 47.67268 * 22 20 15 51 51 H 1.08999 * 110.31161 * 169.85792 * 22 20 15 52 52 H 0.97003 * 119.99743 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6002 1.9833 -0.8379 5 6 3.5641 1.4445 -0.1353 6 6 3.9497 0.8852 -1.4804 7 6 4.0835 1.7291 -2.5674 8 6 4.4377 1.2163 -3.8010 9 6 4.6531 -0.1414 -3.9492 10 6 4.5250 -0.9842 -2.8613 11 6 4.7664 -2.4631 -3.0214 12 6 4.1702 -0.4712 -1.6275 13 6 1.6494 2.1134 1.2916 14 8 1.6393 1.4793 2.3255 15 7 1.3113 3.4180 1.2979 16 6 1.1767 4.3070 0.1240 17 6 0.8204 5.7071 0.7128 18 1 1.0240 6.5653 0.0726 19 6 1.6196 5.6345 2.0633 20 6 0.9908 4.2562 2.4911 21 1 1.3020 3.8567 3.4563 22 6 -0.5230 4.5943 2.3221 23 7 -0.5813 5.5498 1.2018 24 6 -1.6997 6.1652 0.7063 25 1 -1.6164 6.8474 -0.1270 26 6 -2.9406 5.9124 1.2749 27 7 -3.0422 5.0808 2.2899 28 14 -4.4664 6.7515 0.5985 29 1 -4.0857 7.6319 -0.5353 30 1 -5.4284 5.7236 0.1263 31 1 -5.0979 7.5667 1.6671 32 1 -0.3633 -1.0220 -0.1079 33 1 -0.3634 0.4175 0.9390 34 1 -0.3633 0.6045 -0.8311 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.9996 0.8295 0.6523 38 1 3.9353 2.4654 -0.0462 39 1 3.9111 2.7890 -2.4525 40 1 4.5417 1.8754 -4.6501 41 1 4.9255 -0.5427 -4.9141 42 1 3.8320 -2.9570 -3.2879 43 1 5.5020 -2.6281 -3.8087 44 1 5.1399 -2.8739 -2.0834 45 1 4.0665 -1.1303 -0.7782 46 1 2.1177 4.3552 -0.4241 47 1 0.3774 3.9544 -0.5280 48 1 2.6963 5.5714 1.9052 49 1 1.3544 6.4418 2.7461 50 1 -1.0877 3.6931 2.0834 51 1 -0.9112 5.0558 3.2300 52 1 -3.9094 4.9039 2.6870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032666734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:16 Heat of formation + Delta-G solvation = 25.816549 kcal Electronic energy + Delta-G solvation = -30842.281871 eV Core-core repulsion = 27000.436543 eV Total energy + Delta-G solvation = -3841.845328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.35861 -39.60267 -38.15628 -35.31224 -33.62250 -33.02861 -31.73297 -31.52250 -29.38505 -28.70666 -28.45740 -27.07449 -25.22858 -24.76005 -23.54877 -22.35884 -21.98976 -20.69840 -19.92524 -19.58974 -18.26662 -17.40409 -16.65420 -16.35589 -15.66965 -15.58005 -15.38519 -14.74803 -14.64158 -14.08878 -14.06138 -13.73061 -13.64113 -13.43015 -13.28000 -13.23291 -12.85783 -12.66503 -12.43206 -12.21154 -12.10321 -11.88856 -11.70918 -11.67464 -11.32541 -11.19812 -11.11417 -11.03932 -11.02610 -10.86608 -10.79339 -10.74657 -10.57152 -10.54702 -10.22927 -10.06072 -9.65578 -9.30270 -8.88240 -8.72583 -8.66563 -7.96321 -6.93122 -5.77347 -3.12197 1.20513 1.25608 3.07185 3.36113 3.40629 3.41244 3.44428 3.65047 4.40945 4.53768 4.59849 4.71731 4.85728 4.89267 5.01308 5.08131 5.12113 5.17042 5.19499 5.31178 5.36466 5.36882 5.41120 5.44453 5.56145 5.56476 5.61517 5.63079 5.64219 5.71919 5.77229 5.88626 5.92122 5.93695 6.02706 6.05856 6.12498 6.20031 6.28274 6.34045 6.37602 6.41853 6.43114 6.50690 6.51659 6.54925 6.59439 6.71138 6.88867 7.43166 7.50744 7.72634 8.09778 8.15383 8.65519 9.10313 9.70611 10.39451 11.34292 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.002812 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.779810 B = 9954.535283 C =10110.478709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.095 4.095 4 H 0.088 0.912 5 C -0.068 4.068 6 C -0.069 4.069 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.127 4.127 10 C -0.088 4.088 11 C -0.114 4.114 12 C -0.114 4.114 13 C 0.535 3.465 14 O -0.554 6.554 15 N -0.606 5.606 16 C 0.085 3.915 17 C 0.141 3.859 18 H 0.106 0.894 19 C -0.152 4.152 20 C 0.097 3.903 21 H 0.112 0.888 22 C 0.176 3.824 23 N -0.596 5.596 24 C -0.232 4.232 25 H 0.081 0.919 26 C -0.006 4.006 27 N -0.918 5.918 28 Si 0.912 3.088 29 H -0.279 1.279 30 H -0.291 1.291 31 H -0.290 1.290 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.122 0.878 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.046 0.954 51 H 0.055 0.945 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.765 -9.273 -10.083 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.117 4.117 4 H 0.106 0.894 5 C -0.105 4.105 6 C -0.069 4.069 7 C -0.138 4.138 8 C -0.133 4.133 9 C -0.145 4.145 10 C -0.088 4.088 11 C -0.171 4.171 12 C -0.132 4.132 13 C 0.323 3.677 14 O -0.433 6.433 15 N -0.339 5.339 16 C -0.041 4.041 17 C 0.032 3.968 18 H 0.123 0.877 19 C -0.192 4.192 20 C -0.006 4.006 21 H 0.130 0.870 22 C 0.051 3.949 23 N -0.320 5.320 24 C -0.360 4.360 25 H 0.099 0.901 26 C -0.203 4.203 27 N -0.564 5.564 28 Si 0.742 3.258 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.217 1.217 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.140 0.860 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.064 0.936 51 H 0.073 0.927 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.477 -9.685 -9.493 21.340 hybrid contribution -1.029 0.445 -0.464 1.214 sum 15.448 -9.240 -9.957 20.570 Atomic orbital electron populations 1.21780 0.95419 1.01396 1.02511 1.21494 0.96362 0.94202 1.02524 1.21301 0.95879 0.98000 0.96511 0.89408 1.20482 0.93956 1.01883 0.94217 1.19794 0.98333 0.93575 0.95201 1.21070 1.00390 0.99823 0.92543 1.21112 0.99516 0.95294 0.97345 1.20996 1.01821 0.93557 0.98173 1.19899 0.99355 0.95998 0.93521 1.20791 1.01955 0.91828 1.02531 1.20965 1.00383 0.94723 0.97115 1.20049 0.76790 0.80398 0.90444 1.90644 1.54929 1.63132 1.34568 1.49259 1.66477 1.08545 1.09588 1.23280 0.99297 0.93268 0.88218 1.23155 0.86539 0.93404 0.93718 0.87659 1.24221 0.98077 0.97213 0.99651 1.24411 0.98772 0.88332 0.89062 0.87042 1.21803 0.87969 0.93348 0.91765 1.45113 1.00628 1.50269 1.36011 1.19086 0.84108 1.20318 1.12438 0.90139 1.24826 0.97632 0.99573 0.98241 1.69937 1.23274 1.38086 1.25150 0.86055 0.83165 0.78559 0.77993 1.20461 1.21786 1.21739 0.92813 0.92153 0.92895 0.91200 0.90886 0.90214 0.90599 0.86002 0.86141 0.86411 0.91184 0.91706 0.91558 0.85982 0.93015 0.91201 0.91707 0.89869 0.93556 0.92723 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.63 37.16 0.36 -1.93 16 2 C -0.11 -1.47 4.91 -26.74 -0.13 -1.60 16 3 C -0.10 -1.34 1.93 -91.77 -0.18 -1.52 16 4 H 0.09 1.23 7.13 -51.93 -0.37 0.86 16 5 C -0.07 -0.80 4.82 -27.88 -0.13 -0.93 16 6 C -0.07 -0.75 4.72 -104.63 -0.49 -1.25 16 7 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 8 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 9 C -0.13 -1.17 9.70 -39.58 -0.38 -1.55 16 10 C -0.09 -0.83 5.88 -104.62 -0.62 -1.44 16 11 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 12 C -0.11 -1.17 7.52 -39.59 -0.30 -1.47 16 13 C 0.53 9.59 6.02 -10.99 -0.07 9.53 16 14 O -0.55 -11.66 16.40 5.55 0.09 -11.57 16 15 N -0.61 -11.02 2.95 -156.56 -0.46 -11.48 16 16 C 0.08 1.42 5.44 -1.68 -0.01 1.41 16 17 C 0.14 2.56 5.53 -62.55 -0.35 2.22 16 18 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 19 C -0.15 -2.54 6.84 -22.10 -0.15 -2.69 16 20 C 0.10 1.88 5.25 -62.35 -0.33 1.55 16 21 H 0.11 2.12 8.08 -51.93 -0.42 1.70 16 22 C 0.18 4.24 4.74 -1.95 -0.01 4.23 16 23 N -0.60 -14.20 3.01 -156.74 -0.47 -14.67 16 24 C -0.23 -6.11 10.37 -15.06 -0.16 -6.27 16 25 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 26 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 27 N -0.92 -26.72 10.53 55.49 0.58 -26.13 16 28 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.08 7.47 -51.93 -0.39 0.69 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.84 5.89 -51.93 -0.31 0.53 16 36 H 0.07 1.05 7.67 -51.93 -0.40 0.65 16 37 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 44 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.12 1.16 7.98 -52.49 -0.42 0.74 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.30 8.11 -51.92 -0.42 0.88 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 50 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 51 H 0.05 1.45 7.43 -51.93 -0.39 1.07 16 52 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 409.40 15.07 6.17 6.17 Total: -1.00 -31.43 409.40 -11.53 -42.95 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.96 Total: 3.62 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.46 Total: -5.54 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.35 Total: -52.28 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.43 -11.53 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032666734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.771 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds