Wall clock time and date at job start Wed Apr 1 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 H 1.09007 * 109.46758 * 305.40561 * 3 2 1 5 5 C 1.53007 * 109.46871 * 185.41215 * 3 2 1 6 6 C 1.50692 * 109.47057 * 64.99572 * 5 3 2 7 7 C 1.38258 * 120.00308 * 264.99820 * 6 5 3 8 8 C 1.38206 * 120.00297 * 179.97438 * 7 6 5 9 9 C 1.38256 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.38210 * 120.00215 * 359.97438 * 9 8 7 11 11 C 1.38221 * 120.00271 * 84.73214 * 6 5 3 12 12 C 1.50699 * 119.99681 * 359.97438 * 11 6 5 13 13 C 1.50698 * 109.47434 * 65.41033 * 3 2 1 14 14 O 1.21280 * 120.00126 * 41.98853 * 13 3 2 15 15 N 1.34777 * 119.99566 * 221.98586 * 13 3 2 16 16 C 1.47864 * 126.94868 * 5.20987 * 15 13 3 17 17 C 1.55996 * 105.11678 * 181.87135 * 16 15 13 18 18 H 1.08998 * 116.81217 * 159.41490 * 17 16 15 19 19 C 1.57082 * 99.47422 * 33.16053 * 17 16 15 20 20 C 1.49291 * 126.94188 * 185.51297 * 15 13 3 21 21 H 1.09006 * 116.15109 * 16.71166 * 20 15 13 22 22 C 1.56020 * 104.09405 * 247.56367 * 20 15 13 23 23 N 1.49288 * 104.31620 * 289.10953 * 17 16 15 24 24 C 1.36936 * 126.94220 * 246.61468 * 23 17 16 25 25 H 1.08007 * 120.00296 * 359.97438 * 24 23 17 26 26 C 1.38813 * 119.99752 * 180.02562 * 24 23 17 27 27 N 1.31614 * 120.00134 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 119.99945 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.46840 * 59.99811 * 28 26 24 30 30 H 1.48492 * 109.47173 * 179.97438 * 28 26 24 31 31 H 1.48499 * 109.47078 * 300.00179 * 28 26 24 32 32 H 1.09001 * 109.47269 * 65.19389 * 1 2 3 33 33 H 1.09001 * 109.47292 * 185.20220 * 1 2 3 34 34 H 1.09003 * 109.47264 * 305.19910 * 1 2 3 35 35 H 1.08997 * 109.46931 * 239.99759 * 2 1 3 36 36 H 1.09004 * 109.46740 * 119.99337 * 2 1 3 37 37 H 1.08999 * 109.46894 * 184.99551 * 5 3 2 38 38 H 1.08999 * 109.46821 * 304.99601 * 5 3 2 39 39 H 1.08001 * 119.99810 * 0.02562 * 7 6 5 40 40 H 1.08008 * 120.00293 * 180.02562 * 8 7 6 41 41 H 1.08003 * 119.99822 * 179.97438 * 9 8 7 42 42 H 1.08000 * 120.00086 * 179.97438 * 10 9 8 43 43 H 1.09001 * 109.47410 * 89.99998 * 12 11 6 44 44 H 1.08997 * 109.47034 * 210.00491 * 12 11 6 45 45 H 1.09002 * 109.47067 * 330.00131 * 12 11 6 46 46 H 1.09002 * 110.31417 * 300.90297 * 16 15 13 47 47 H 1.08999 * 110.31954 * 63.08984 * 16 15 13 48 48 H 1.09003 * 112.36706 * 191.51254 * 19 17 16 49 49 H 1.09000 * 112.37381 * 64.07477 * 19 17 16 50 50 H 1.08997 * 110.31586 * 47.67871 * 22 20 15 51 51 H 1.09005 * 110.31185 * 169.86260 * 22 20 15 52 52 H 0.97004 * 120.00239 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 -0.8377 5 6 3.5640 1.4446 -0.1361 6 6 3.9490 0.8855 -1.4815 7 6 4.2697 -0.4534 -1.6077 8 6 4.6222 -0.9662 -2.8417 9 6 4.6547 -0.1403 -3.9499 10 6 4.3341 1.1982 -3.8239 11 6 3.9761 1.7101 -2.5905 12 6 3.6201 3.1681 -2.4542 13 6 1.6501 2.1132 1.2919 14 8 1.7481 1.5123 2.3408 15 7 1.1924 3.3809 1.2816 16 6 0.9112 4.2147 0.0933 17 6 0.4559 5.5939 0.6626 18 1 0.5294 6.4507 -0.0071 19 6 1.3380 5.6414 1.9615 20 6 0.8729 4.2291 2.4679 21 1 1.2820 3.8952 3.4215 22 6 -0.6763 4.4029 2.4045 23 7 -0.8932 5.3263 1.2432 24 6 -2.0919 5.8193 0.8012 25 1 -2.1227 6.4769 -0.0550 26 6 -3.2673 5.4746 1.4543 27 7 -3.2296 4.6744 2.4986 28 14 -4.9024 6.1476 0.8518 29 1 -5.1301 5.7134 -0.5499 30 1 -5.9971 5.6328 1.7131 31 1 -4.8798 7.6312 0.9130 32 1 -0.3634 0.4312 -0.9328 33 1 -0.3634 -1.0234 0.0932 34 1 -0.3634 0.5924 0.8398 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.9353 2.4655 -0.0471 38 1 3.9999 0.8295 0.6512 39 1 4.2440 -1.0987 -0.7421 40 1 4.8724 -2.0123 -2.9404 41 1 4.9306 -0.5410 -4.9142 42 1 4.3598 1.8435 -4.6895 43 1 4.5194 3.7424 -2.2316 44 1 3.1832 3.5241 -3.3871 45 1 2.9002 3.2922 -1.6452 46 1 1.8121 4.3308 -0.5093 47 1 0.1125 3.7703 -0.5005 48 1 1.0393 6.4433 2.6366 49 1 2.4044 5.6714 1.7379 50 1 -1.1587 3.4395 2.2393 51 1 -1.0439 4.8584 3.3240 52 1 -4.0510 4.4332 2.9547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032733342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:19 Heat of formation + Delta-G solvation = 28.981668 kcal Electronic energy + Delta-G solvation = -31380.607665 eV Core-core repulsion = 27538.899587 eV Total energy + Delta-G solvation = -3841.708078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.43508 -39.60582 -38.07976 -35.21353 -33.55004 -33.02556 -31.81760 -31.48722 -29.34720 -28.77155 -28.42475 -27.01707 -25.21405 -24.65624 -23.54794 -22.23470 -22.00719 -20.83175 -19.88696 -19.65469 -18.24611 -17.44118 -16.55628 -16.36335 -15.69378 -15.64430 -15.30334 -14.78581 -14.71756 -14.07246 -14.06486 -13.61251 -13.54431 -13.43653 -13.28867 -13.09171 -12.91445 -12.66988 -12.40407 -12.22028 -11.96121 -11.92175 -11.73898 -11.59233 -11.29721 -11.13550 -11.08419 -11.05212 -10.99132 -10.85941 -10.78858 -10.75037 -10.56383 -10.53550 -10.26734 -10.09065 -9.60717 -9.29804 -8.89277 -8.72637 -8.64100 -7.97436 -6.93725 -5.76643 -3.10999 1.21431 1.26391 3.06357 3.36956 3.39744 3.41447 3.43552 3.65392 4.41130 4.55649 4.64187 4.80617 4.82147 4.89730 4.94427 5.09051 5.10039 5.18224 5.21723 5.30161 5.35504 5.40833 5.50063 5.50919 5.55977 5.56485 5.62941 5.66536 5.69861 5.72963 5.77975 5.87441 5.91630 5.97093 6.04497 6.11974 6.17716 6.18986 6.28472 6.36355 6.36918 6.38279 6.40872 6.49867 6.52498 6.57415 6.58718 6.70856 6.89789 7.41323 7.48235 7.70502 8.05510 8.14231 8.64443 9.07052 9.70487 10.39394 11.35583 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.003093 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.342173 B = 9051.078068 C = 9207.162926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.096 4.096 4 H 0.088 0.912 5 C -0.068 4.068 6 C -0.075 4.075 7 C -0.110 4.110 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.079 4.079 12 C -0.125 4.125 13 C 0.535 3.465 14 O -0.554 6.554 15 N -0.605 5.605 16 C 0.083 3.917 17 C 0.142 3.858 18 H 0.106 0.894 19 C -0.151 4.151 20 C 0.096 3.904 21 H 0.110 0.890 22 C 0.177 3.823 23 N -0.599 5.599 24 C -0.232 4.232 25 H 0.079 0.921 26 C -0.005 4.005 27 N -0.919 5.919 28 Si 0.911 3.089 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.285 1.285 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.056 0.944 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.561 -6.380 -10.451 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.118 4.118 4 H 0.106 0.894 5 C -0.106 4.106 6 C -0.075 4.075 7 C -0.128 4.128 8 C -0.145 4.145 9 C -0.141 4.141 10 C -0.138 4.138 11 C -0.079 4.079 12 C -0.181 4.181 13 C 0.323 3.677 14 O -0.432 6.432 15 N -0.339 5.339 16 C -0.042 4.042 17 C 0.033 3.967 18 H 0.124 0.876 19 C -0.191 4.191 20 C -0.007 4.007 21 H 0.128 0.872 22 C 0.053 3.947 23 N -0.324 5.324 24 C -0.360 4.360 25 H 0.097 0.903 26 C -0.202 4.202 27 N -0.566 5.566 28 Si 0.742 3.258 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.211 1.211 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.324 -6.795 -9.820 20.226 hybrid contribution -1.030 0.192 -0.452 1.141 sum 15.294 -6.603 -10.272 19.571 Atomic orbital electron populations 1.21780 0.95357 1.01741 1.02206 1.21483 0.96333 0.94136 1.02590 1.21316 0.95932 0.98085 0.96429 0.89420 1.20478 0.93917 1.01982 0.94181 1.19673 0.99413 0.93664 0.94726 1.21078 0.99294 0.94712 0.97707 1.21096 1.00818 0.99671 0.92892 1.21096 1.00561 0.93906 0.98531 1.21015 1.00397 0.95506 0.96913 1.19814 0.98985 0.96213 0.92865 1.20985 1.02037 0.91853 1.03268 1.20049 0.76822 0.80176 0.90629 1.90646 1.55881 1.63225 1.33479 1.49252 1.63392 1.12033 1.09185 1.23328 0.98689 0.94457 0.87758 1.23121 0.86631 0.93268 0.93643 0.87642 1.24156 0.98361 0.96843 0.99719 1.24335 0.99053 0.88201 0.89109 0.87204 1.22251 0.86873 0.94351 0.91229 1.45720 1.00158 1.54059 1.32446 1.19000 0.82595 1.23705 1.10694 0.90292 1.24799 0.97746 0.99751 0.97906 1.69893 1.26595 1.38407 1.21674 0.86215 0.83414 0.78385 0.77802 1.21195 1.21644 1.21137 0.92905 0.92713 0.92212 0.91206 0.90899 0.90545 0.90177 0.85979 0.86300 0.86378 0.86215 0.91073 0.91357 0.90713 0.92890 0.91191 0.89850 0.91720 0.93306 0.92545 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.81 37.16 0.36 -1.94 16 2 C -0.11 -1.47 5.03 -26.73 -0.13 -1.61 16 3 C -0.10 -1.35 1.75 -91.77 -0.16 -1.51 16 4 H 0.09 1.21 5.85 -51.93 -0.30 0.91 16 5 C -0.07 -0.81 4.11 -27.88 -0.11 -0.93 16 6 C -0.07 -0.82 4.57 -104.62 -0.48 -1.30 16 7 C -0.11 -1.13 8.21 -39.59 -0.33 -1.45 16 8 C -0.13 -1.18 10.05 -39.59 -0.40 -1.57 16 9 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 10 C -0.12 -1.15 9.70 -39.59 -0.38 -1.54 16 11 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 12 C -0.13 -1.17 9.22 36.01 0.33 -0.83 16 13 C 0.53 9.51 5.72 -10.99 -0.06 9.45 16 14 O -0.55 -11.62 16.70 5.56 0.09 -11.52 16 15 N -0.61 -10.86 2.94 -156.80 -0.46 -11.32 16 16 C 0.08 1.37 5.36 -1.69 -0.01 1.36 16 17 C 0.14 2.56 5.52 -62.57 -0.35 2.22 16 18 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 19 C -0.15 -2.49 6.82 -22.30 -0.15 -2.65 16 20 C 0.10 1.83 5.17 -62.55 -0.32 1.51 16 21 H 0.11 2.07 8.09 -51.93 -0.42 1.65 16 22 C 0.18 4.22 4.88 -0.50 0.00 4.22 16 23 N -0.60 -14.17 3.07 -154.65 -0.47 -14.65 16 24 C -0.23 -6.10 10.38 -15.06 -0.16 -6.26 16 25 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 26 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 27 N -0.92 -26.65 10.57 55.49 0.59 -26.06 16 28 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.09 7.24 -51.93 -0.38 0.71 16 35 H 0.07 0.84 6.19 -51.93 -0.32 0.52 16 36 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 37 H 0.08 0.89 7.01 -51.93 -0.36 0.52 16 38 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 45 H 0.07 0.76 3.52 -51.93 -0.18 0.58 16 46 H 0.05 0.70 6.20 -51.93 -0.32 0.37 16 47 H 0.07 1.29 8.13 -51.93 -0.42 0.86 16 48 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.05 1.34 7.73 -51.93 -0.40 0.94 16 51 H 0.06 1.48 7.47 -51.93 -0.39 1.09 16 52 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -31.25 400.35 -11.22 -42.46 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.51 Total: 4.50 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.46 Total: -6.02 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.35 Total: -52.04 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.25 -11.22 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032733342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.444 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds