Wall clock time and date at job start Wed Apr 1 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 H 1.09007 * 109.46758 * 305.40561 * 3 2 1 5 5 C 1.53007 * 109.46871 * 185.41215 * 3 2 1 6 6 C 1.50692 * 109.47057 * 64.99572 * 5 3 2 7 7 C 1.38258 * 120.00308 * 264.99820 * 6 5 3 8 8 C 1.38206 * 120.00297 * 179.97438 * 7 6 5 9 9 C 1.38256 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.38210 * 120.00215 * 359.97438 * 9 8 7 11 11 C 1.38221 * 120.00271 * 84.73214 * 6 5 3 12 12 C 1.50699 * 119.99681 * 359.97438 * 11 6 5 13 13 C 1.50698 * 109.47434 * 65.41033 * 3 2 1 14 14 O 1.21280 * 120.00126 * 41.98853 * 13 3 2 15 15 N 1.34777 * 119.99566 * 221.98586 * 13 3 2 16 16 C 1.47864 * 126.94868 * 5.20987 * 15 13 3 17 17 C 1.55996 * 105.11678 * 181.87135 * 16 15 13 18 18 H 1.08998 * 116.81217 * 159.41490 * 17 16 15 19 19 C 1.57082 * 99.47422 * 33.16053 * 17 16 15 20 20 C 1.49291 * 126.94188 * 185.51297 * 15 13 3 21 21 H 1.09006 * 116.15109 * 16.71166 * 20 15 13 22 22 C 1.56020 * 104.09405 * 247.56367 * 20 15 13 23 23 N 1.49288 * 104.31620 * 289.10953 * 17 16 15 24 24 C 1.36936 * 126.94220 * 246.61468 * 23 17 16 25 25 H 1.08007 * 120.00296 * 359.97438 * 24 23 17 26 26 C 1.38813 * 119.99752 * 180.02562 * 24 23 17 27 27 N 1.31614 * 120.00134 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 119.99945 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.46840 * 59.99811 * 28 26 24 30 30 H 1.48492 * 109.47173 * 179.97438 * 28 26 24 31 31 H 1.48499 * 109.47078 * 300.00179 * 28 26 24 32 32 H 1.09001 * 109.47269 * 65.19389 * 1 2 3 33 33 H 1.09001 * 109.47292 * 185.20220 * 1 2 3 34 34 H 1.09003 * 109.47264 * 305.19910 * 1 2 3 35 35 H 1.08997 * 109.46931 * 239.99759 * 2 1 3 36 36 H 1.09004 * 109.46740 * 119.99337 * 2 1 3 37 37 H 1.08999 * 109.46894 * 184.99551 * 5 3 2 38 38 H 1.08999 * 109.46821 * 304.99601 * 5 3 2 39 39 H 1.08001 * 119.99810 * 0.02562 * 7 6 5 40 40 H 1.08008 * 120.00293 * 180.02562 * 8 7 6 41 41 H 1.08003 * 119.99822 * 179.97438 * 9 8 7 42 42 H 1.08000 * 120.00086 * 179.97438 * 10 9 8 43 43 H 1.09001 * 109.47410 * 89.99998 * 12 11 6 44 44 H 1.08997 * 109.47034 * 210.00491 * 12 11 6 45 45 H 1.09002 * 109.47067 * 330.00131 * 12 11 6 46 46 H 1.09002 * 110.31417 * 300.90297 * 16 15 13 47 47 H 1.08999 * 110.31954 * 63.08984 * 16 15 13 48 48 H 1.09003 * 112.36706 * 191.51254 * 19 17 16 49 49 H 1.09000 * 112.37381 * 64.07477 * 19 17 16 50 50 H 1.08997 * 110.31586 * 47.67871 * 22 20 15 51 51 H 1.09005 * 110.31185 * 169.86260 * 22 20 15 52 52 H 0.97004 * 120.00239 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 -0.8377 5 6 3.5640 1.4446 -0.1361 6 6 3.9490 0.8855 -1.4815 7 6 4.2697 -0.4534 -1.6077 8 6 4.6222 -0.9662 -2.8417 9 6 4.6547 -0.1403 -3.9499 10 6 4.3341 1.1982 -3.8239 11 6 3.9761 1.7101 -2.5905 12 6 3.6201 3.1681 -2.4542 13 6 1.6501 2.1132 1.2919 14 8 1.7481 1.5123 2.3408 15 7 1.1924 3.3809 1.2816 16 6 0.9112 4.2147 0.0933 17 6 0.4559 5.5939 0.6626 18 1 0.5294 6.4507 -0.0071 19 6 1.3380 5.6414 1.9615 20 6 0.8729 4.2291 2.4679 21 1 1.2820 3.8952 3.4215 22 6 -0.6763 4.4029 2.4045 23 7 -0.8932 5.3263 1.2432 24 6 -2.0919 5.8193 0.8012 25 1 -2.1227 6.4769 -0.0550 26 6 -3.2673 5.4746 1.4543 27 7 -3.2296 4.6744 2.4986 28 14 -4.9024 6.1476 0.8518 29 1 -5.1301 5.7134 -0.5499 30 1 -5.9971 5.6328 1.7131 31 1 -4.8798 7.6312 0.9130 32 1 -0.3634 0.4312 -0.9328 33 1 -0.3634 -1.0234 0.0932 34 1 -0.3634 0.5924 0.8398 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.9353 2.4655 -0.0471 38 1 3.9999 0.8295 0.6512 39 1 4.2440 -1.0987 -0.7421 40 1 4.8724 -2.0123 -2.9404 41 1 4.9306 -0.5410 -4.9142 42 1 4.3598 1.8435 -4.6895 43 1 4.5194 3.7424 -2.2316 44 1 3.1832 3.5241 -3.3871 45 1 2.9002 3.2922 -1.6452 46 1 1.8121 4.3308 -0.5093 47 1 0.1125 3.7703 -0.5005 48 1 1.0393 6.4433 2.6366 49 1 2.4044 5.6714 1.7379 50 1 -1.1587 3.4395 2.2393 51 1 -1.0439 4.8584 3.3240 52 1 -4.0510 4.4332 2.9547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032733342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:18 Heat of formation + Delta-G solvation = 13.434613 kcal Electronic energy + Delta-G solvation = -31381.281836 eV Core-core repulsion = 27538.899587 eV Total energy + Delta-G solvation = -3842.382249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76759 -40.58942 -39.47509 -36.36141 -35.39023 -33.81460 -33.22483 -32.67559 -30.90583 -30.22922 -29.74747 -27.75413 -26.94242 -25.84084 -25.04755 -23.59713 -22.77881 -21.81093 -21.40452 -21.00742 -19.77890 -18.91810 -18.13618 -17.32948 -17.20425 -16.54682 -16.48495 -16.28622 -15.81513 -15.68331 -15.15217 -15.02030 -14.88827 -14.55833 -14.16161 -14.07657 -13.98497 -13.84401 -13.69712 -13.50532 -13.35394 -13.09644 -13.02661 -12.93232 -12.73575 -12.70755 -12.67181 -12.36976 -12.23108 -12.14246 -12.05410 -11.95489 -11.91548 -11.79339 -11.77808 -11.59914 -11.47921 -10.84661 -10.60459 -9.61933 -9.50735 -9.39247 -8.90294 -7.83289 -5.18626 0.48333 0.55866 1.46368 1.49152 1.55170 1.65799 2.01713 2.48940 2.90733 3.30954 3.35779 3.49712 3.66353 3.78219 3.90378 3.98297 4.02215 4.04351 4.07728 4.16308 4.21496 4.22482 4.26820 4.38883 4.46614 4.49517 4.57360 4.61266 4.67886 4.72705 4.83523 4.86202 4.90157 4.92018 4.97056 4.97650 4.99500 5.03476 5.07128 5.14712 5.18197 5.25152 5.27192 5.27476 5.43570 5.46362 5.54980 5.65418 5.66906 5.69716 5.82984 6.07773 6.20740 6.70432 7.00500 7.20739 7.70727 8.42474 9.27920 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.003093 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.342173 B = 9051.078068 C = 9207.162926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.085 4.085 4 H 0.094 0.906 5 C -0.057 4.057 6 C -0.089 4.089 7 C -0.121 4.121 8 C -0.133 4.133 9 C -0.125 4.125 10 C -0.128 4.128 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.530 3.470 14 O -0.592 6.592 15 N -0.608 5.608 16 C 0.092 3.908 17 C 0.137 3.863 18 H 0.137 0.863 19 C -0.127 4.127 20 C 0.097 3.903 21 H 0.109 0.891 22 C 0.190 3.810 23 N -0.619 5.619 24 C -0.229 4.229 25 H 0.096 0.904 26 C -0.072 4.072 27 N -0.958 5.958 28 Si 0.975 3.025 29 H -0.277 1.277 30 H -0.304 1.304 31 H -0.273 1.273 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.017 0.983 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.048 0.952 48 H 0.079 0.921 49 H 0.105 0.895 50 H -0.004 1.004 51 H 0.018 0.982 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.054 -5.571 -13.738 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.139 4.139 3 C -0.106 4.106 4 H 0.112 0.888 5 C -0.095 4.095 6 C -0.089 4.089 7 C -0.139 4.139 8 C -0.151 4.151 9 C -0.143 4.143 10 C -0.146 4.146 11 C -0.089 4.089 12 C -0.180 4.180 13 C 0.321 3.679 14 O -0.473 6.473 15 N -0.341 5.341 16 C -0.033 4.033 17 C 0.030 3.970 18 H 0.154 0.846 19 C -0.167 4.167 20 C -0.007 4.007 21 H 0.127 0.873 22 C 0.065 3.935 23 N -0.344 5.344 24 C -0.358 4.358 25 H 0.113 0.887 26 C -0.265 4.265 27 N -0.607 5.607 28 Si 0.804 3.196 29 H -0.203 1.203 30 H -0.231 1.231 31 H -0.199 1.199 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.123 0.877 50 H 0.014 0.986 51 H 0.036 0.964 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.864 -5.955 -13.162 23.760 hybrid contribution -1.756 -0.104 0.525 1.836 sum 17.108 -6.059 -12.638 22.115 Atomic orbital electron populations 1.21757 0.96582 1.01887 1.00561 1.21457 0.95064 0.94236 1.03151 1.21283 0.97727 0.97582 0.93982 0.88812 1.20366 0.91806 1.02420 0.94927 1.19609 1.00878 0.94195 0.94239 1.21240 0.99526 0.94649 0.98467 1.21369 1.00358 1.00777 0.92572 1.21434 0.99606 0.93831 0.99439 1.21292 1.00050 0.96096 0.97189 1.20018 0.99034 0.96806 0.93016 1.20997 1.02276 0.91357 1.03417 1.20793 0.75862 0.79737 0.91553 1.90622 1.57489 1.63955 1.35283 1.49340 1.63145 1.12428 1.09177 1.23239 1.00135 0.92737 0.87142 1.23567 0.83653 0.94968 0.94783 0.84559 1.24056 1.00260 0.94215 0.98124 1.24159 0.95440 0.90854 0.90208 0.87296 1.21818 0.90020 0.91598 0.90102 1.45978 1.01896 1.53776 1.32704 1.19511 0.83645 1.22420 1.10192 0.88676 1.25639 1.01296 1.00915 0.98603 1.70149 1.26375 1.40680 1.23495 0.85189 0.79123 0.78118 0.77137 1.20301 1.23133 1.19895 0.92340 0.91255 0.96396 0.88883 0.91908 0.89904 0.90845 0.85604 0.84488 0.84257 0.84499 0.90033 0.90307 0.91696 0.88061 0.93339 0.90216 0.87659 0.98595 0.96374 0.94839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.81 71.98 0.71 -3.89 16 2 C -0.10 -2.72 5.03 30.59 0.15 -2.57 16 3 C -0.08 -2.28 1.75 -11.54 -0.02 -2.30 16 4 H 0.09 2.43 5.85 -2.38 -0.01 2.42 16 5 C -0.06 -1.27 4.11 29.85 0.12 -1.15 16 6 C -0.09 -1.76 4.57 -19.87 -0.09 -1.85 16 7 C -0.12 -2.22 8.21 22.27 0.18 -2.04 16 8 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 9 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 10 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 11 C -0.09 -1.60 5.88 -19.86 -0.12 -1.72 16 12 C -0.12 -1.87 9.22 71.24 0.66 -1.22 16 13 C 0.53 18.97 5.72 87.66 0.50 19.48 16 14 O -0.59 -25.68 16.70 -3.03 -0.05 -25.73 16 15 N -0.61 -21.63 2.94 -768.37 -2.26 -23.89 16 16 C 0.09 2.82 5.36 87.16 0.47 3.29 16 17 C 0.14 4.60 5.52 46.92 0.26 4.85 16 18 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 19 C -0.13 -3.90 6.82 33.46 0.23 -3.67 16 20 C 0.10 3.75 5.17 46.93 0.24 4.00 16 21 H 0.11 4.23 8.09 -2.38 -0.02 4.21 16 22 C 0.19 9.58 4.88 86.75 0.42 10.00 16 23 N -0.62 -29.53 3.07 -643.20 -1.97 -31.51 16 24 C -0.23 -12.09 10.38 84.03 0.87 -11.22 16 25 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 26 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 27 N -0.96 -58.83 10.57 21.65 0.23 -58.60 16 28 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 29 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 30 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 31 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.02 0.67 7.24 -2.39 -0.02 0.65 16 35 H 0.09 2.09 6.19 -2.39 -0.01 2.08 16 36 H 0.06 1.82 7.71 -2.39 -0.02 1.81 16 37 H 0.08 1.71 7.01 -2.39 -0.02 1.70 16 38 H 0.07 1.72 8.05 -2.39 -0.02 1.70 16 39 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 45 H 0.06 1.08 3.52 -2.39 -0.01 1.08 16 46 H 0.10 2.22 6.20 -2.39 -0.01 2.20 16 47 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 48 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.00 -0.25 7.73 -2.39 -0.02 -0.27 16 51 H 0.02 1.03 7.47 -2.38 -0.02 1.01 16 52 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.02 400.35 4.59 -68.43 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.90 Total: 22.82 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.72 Total: 1.05 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.00 Total: -113.99 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -73.02 4.59 -68.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032733342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.865 kcal (2) G-P(sol) polarization free energy of solvation -73.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds