Wall clock time and date at job start Wed Apr 1 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47284 * 2 1 4 4 H 1.09010 * 109.46962 * 304.45731 * 3 2 1 5 5 C 1.53002 * 109.47282 * 64.45398 * 3 2 1 6 6 C 1.50698 * 109.47121 * 187.01427 * 5 3 2 7 7 C 1.38257 * 119.99594 * 265.61640 * 6 5 3 8 8 C 1.38213 * 119.99673 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.00417 * 0.02562 * 8 7 6 10 10 C 1.38213 * 119.99401 * 359.97438 * 9 8 7 11 11 C 1.38222 * 120.00315 * 85.34606 * 6 5 3 12 12 C 1.50702 * 119.99365 * 359.97438 * 11 6 5 13 13 C 1.50693 * 109.47618 * 184.45747 * 3 2 1 14 14 O 1.21285 * 120.00461 * 273.96617 * 13 3 2 15 15 N 1.34777 * 120.00074 * 93.96182 * 13 3 2 16 16 C 1.49068 * 127.54704 * 356.05509 * 15 13 3 17 17 C 1.56017 * 105.20762 * 182.03032 * 16 15 13 18 18 H 1.08999 * 116.24279 * 158.16324 * 17 16 15 19 19 C 1.57079 * 99.60901 * 32.13443 * 17 16 15 20 20 C 1.49288 * 126.94617 * 174.85523 * 15 13 3 21 21 H 1.08997 * 116.15482 * 16.68245 * 20 15 13 22 22 C 1.56022 * 104.87398 * 246.88180 * 20 15 13 23 23 N 1.47873 * 105.10126 * 288.58416 * 22 20 15 24 24 C 1.36937 * 126.93970 * 182.00063 * 23 22 20 25 25 H 1.07997 * 119.99552 * 179.97438 * 24 23 22 26 26 C 1.38815 * 120.00296 * 359.97438 * 24 23 22 27 27 N 1.31615 * 119.99931 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99890 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47480 * 0.02562 * 28 26 24 30 30 H 1.48502 * 109.47169 * 120.00221 * 28 26 24 31 31 H 1.48501 * 109.47018 * 240.00044 * 28 26 24 32 32 H 1.08993 * 109.47389 * 301.74311 * 1 2 3 33 33 H 1.08998 * 109.47301 * 61.74502 * 1 2 3 34 34 H 1.09010 * 109.46862 * 181.74731 * 1 2 3 35 35 H 1.08996 * 109.47649 * 239.99885 * 2 1 3 36 36 H 1.09003 * 109.47564 * 119.99720 * 2 1 3 37 37 H 1.09000 * 109.47202 * 307.01196 * 5 3 2 38 38 H 1.08995 * 109.47098 * 67.01424 * 5 3 2 39 39 H 1.07990 * 120.00427 * 0.02562 * 7 6 5 40 40 H 1.08002 * 120.00404 * 180.02562 * 8 7 6 41 41 H 1.07991 * 120.00139 * 179.97438 * 9 8 7 42 42 H 1.08007 * 119.99422 * 179.97438 * 10 9 8 43 43 H 1.08997 * 109.47255 * 93.91481 * 12 11 6 44 44 H 1.09004 * 109.46427 * 213.91085 * 12 11 6 45 45 H 1.08996 * 109.47710 * 333.90890 * 12 11 6 46 46 H 1.09002 * 110.83213 * 62.79176 * 16 15 13 47 47 H 1.09001 * 109.69360 * 300.68175 * 16 15 13 48 48 H 1.08992 * 112.36543 * 191.71557 * 19 17 16 49 49 H 1.09000 * 112.37008 * 64.27098 * 19 17 16 50 50 H 1.09006 * 110.31223 * 47.48193 * 22 20 15 51 51 H 1.08992 * 110.31695 * 169.67485 * 22 20 15 52 52 H 0.96999 * 120.00185 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6128 1.9789 -0.8474 5 6 1.6235 2.1307 1.3015 6 6 1.9735 3.5947 1.2298 7 6 3.1737 4.0447 1.7482 8 6 3.4949 5.3873 1.6820 9 6 2.6160 6.2806 1.0979 10 6 1.4162 5.8307 0.5797 11 6 1.0973 4.4869 0.6409 12 6 -0.2079 3.9952 0.0699 13 6 3.5428 1.4440 -0.1104 14 8 4.2244 1.3448 0.8879 15 7 4.1297 1.5555 -1.3186 16 6 3.4633 1.6046 -2.6511 17 6 4.6266 1.6838 -3.6878 18 1 4.3905 1.3636 -4.7026 19 6 5.7155 0.8478 -2.9243 20 6 5.5907 1.6808 -1.5983 21 1 6.2612 1.4037 -0.7849 22 6 5.7658 3.1192 -2.1770 23 7 5.1635 3.0674 -3.5266 24 6 5.1095 4.0833 -4.4432 25 1 4.6397 3.9210 -5.4020 26 6 5.6584 5.3217 -4.1400 27 7 6.2314 5.5193 -2.9717 28 14 5.5840 6.7076 -5.3901 29 1 4.8922 6.2327 -6.6152 30 1 4.8373 7.8546 -4.8137 31 1 6.9629 7.1378 -5.7350 32 1 -0.3634 0.5406 0.8739 33 1 -0.3634 0.4865 -0.9052 34 1 -0.3633 -1.0273 0.0313 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.5483 2.0207 1.4428 38 1 2.1488 1.6722 2.1392 39 1 3.8604 3.3470 2.2041 40 1 4.4326 5.7389 2.0866 41 1 2.8668 7.3297 1.0466 42 1 0.7294 6.5285 0.1238 43 1 -0.9928 4.0947 0.8196 44 1 -0.4665 4.5877 -0.8078 45 1 -0.1083 2.9480 -0.2152 46 1 2.8234 2.4833 -2.7324 47 1 2.8810 0.6960 -2.8043 48 1 6.7018 0.9377 -3.3794 49 1 5.4206 -0.1928 -2.7896 50 1 5.2396 3.8437 -1.5554 51 1 6.8233 3.3740 -2.2441 52 1 6.6153 6.3845 -2.7599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032733354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:22 Heat of formation + Delta-G solvation = 29.796370 kcal Electronic energy + Delta-G solvation = -32157.418682 eV Core-core repulsion = 28315.745932 eV Total energy + Delta-G solvation = -3841.672750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.29440 -39.28431 -37.92183 -35.41279 -33.54447 -32.62252 -31.67926 -31.40760 -29.19430 -28.57228 -28.24394 -26.65574 -25.26924 -25.05474 -23.45289 -21.83955 -21.62624 -20.63576 -19.88310 -19.59261 -18.28088 -17.33006 -16.40601 -16.26190 -15.60526 -15.13374 -14.98619 -14.94615 -14.51357 -14.21653 -14.00545 -13.76384 -13.39998 -13.26662 -12.91659 -12.75216 -12.64064 -12.42850 -12.26151 -12.07980 -11.99278 -11.86828 -11.66454 -11.62623 -11.43077 -11.27371 -11.07374 -11.01684 -10.85771 -10.79557 -10.64847 -10.57851 -10.52790 -10.37263 -10.18459 -10.03642 -9.62309 -9.23450 -8.68267 -8.41468 -8.23383 -7.92900 -6.90404 -5.74987 -3.09224 1.67849 1.76774 3.12699 3.36891 3.41926 3.44961 3.46779 4.07187 4.42644 4.71651 4.79360 4.91052 5.06290 5.10398 5.15582 5.21575 5.26888 5.28554 5.35405 5.43809 5.46103 5.50176 5.57024 5.60125 5.64510 5.68177 5.69328 5.79391 5.81308 5.85488 5.90288 5.94924 5.97490 5.99422 6.08871 6.13994 6.20885 6.25533 6.32211 6.42190 6.44006 6.48605 6.54563 6.61501 6.72250 6.82390 6.91108 6.99420 7.38397 7.44403 7.52952 7.74498 8.11269 8.19260 8.70209 9.11807 9.72925 10.42301 11.36888 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.005036 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.556452 B = 5558.836713 C = 7005.908795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.098 4.098 4 H 0.088 0.912 5 C -0.065 4.065 6 C -0.088 4.088 7 C -0.097 4.097 8 C -0.120 4.120 9 C -0.114 4.114 10 C -0.123 4.123 11 C -0.086 4.086 12 C -0.116 4.116 13 C 0.539 3.461 14 O -0.557 6.557 15 N -0.606 5.606 16 C 0.087 3.913 17 C 0.140 3.860 18 H 0.105 0.895 19 C -0.152 4.152 20 C 0.097 3.903 21 H 0.110 0.890 22 C 0.177 3.823 23 N -0.595 5.595 24 C -0.231 4.231 25 H 0.080 0.920 26 C -0.004 4.004 27 N -0.916 5.916 28 Si 0.909 3.091 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.054 0.946 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -8.229 6.399 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.120 4.120 4 H 0.107 0.893 5 C -0.102 4.102 6 C -0.088 4.088 7 C -0.115 4.115 8 C -0.138 4.138 9 C -0.132 4.132 10 C -0.141 4.141 11 C -0.086 4.086 12 C -0.173 4.173 13 C 0.328 3.672 14 O -0.436 6.436 15 N -0.339 5.339 16 C -0.038 4.038 17 C 0.031 3.969 18 H 0.123 0.877 19 C -0.191 4.191 20 C -0.006 4.006 21 H 0.128 0.872 22 C 0.052 3.948 23 N -0.320 5.320 24 C -0.359 4.359 25 H 0.098 0.902 26 C -0.201 4.201 27 N -0.563 5.563 28 Si 0.740 3.260 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.243 -8.006 6.970 15.462 hybrid contribution 0.108 1.099 -0.758 1.339 sum -11.135 -6.908 6.212 14.501 Atomic orbital electron populations 1.21846 0.95209 1.01757 1.02150 1.21416 0.96182 0.94501 1.02769 1.21334 0.93017 0.97673 0.99932 0.89339 1.20539 1.01342 0.91263 0.97062 1.19636 0.94803 0.94896 0.99466 1.21188 0.95877 0.95560 0.98873 1.21109 0.99128 0.93605 0.99941 1.21070 0.94306 0.99541 0.98332 1.20902 0.97337 0.94986 1.00836 1.19676 0.96498 0.93365 0.99020 1.20850 0.94202 1.01813 1.00427 1.19971 0.89657 0.75805 0.81774 1.90603 1.65645 1.51796 1.35554 1.49475 1.08463 1.70552 1.05414 1.23478 0.97260 0.99754 0.83333 1.23146 0.90961 0.87208 0.95541 0.87708 1.24156 1.00808 0.97284 0.96889 1.24275 0.81322 0.99181 0.95821 0.87244 1.21886 0.98307 0.89391 0.85228 1.45212 1.66301 1.06302 1.14154 1.19065 1.32450 0.89260 0.95117 0.90224 1.24790 1.00542 0.97653 0.97098 1.69928 1.42555 1.22979 1.20795 0.86091 0.77258 0.82377 0.80285 1.20487 1.21822 1.21758 0.92209 0.92487 0.92528 0.91592 0.91238 0.90230 0.89991 0.85552 0.86473 0.86560 0.86626 0.91608 0.91677 0.91311 0.91161 0.93048 0.89964 0.91785 0.93440 0.92834 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.71 37.15 0.36 -0.97 16 2 C -0.11 -1.25 5.39 -26.74 -0.14 -1.39 16 3 C -0.10 -1.38 1.57 -91.77 -0.14 -1.52 16 4 H 0.09 1.28 6.31 -51.92 -0.33 0.95 16 5 C -0.06 -0.88 3.80 -27.88 -0.11 -0.98 16 6 C -0.09 -1.39 4.79 -104.62 -0.50 -1.89 16 7 C -0.10 -1.69 8.84 -39.58 -0.35 -2.04 16 8 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 9 C -0.11 -1.86 10.05 -39.58 -0.40 -2.26 16 10 C -0.12 -1.90 9.72 -39.59 -0.38 -2.28 16 11 C -0.09 -1.28 5.88 -104.62 -0.62 -1.90 16 12 C -0.12 -1.35 9.32 36.01 0.34 -1.01 16 13 C 0.54 9.70 6.14 -10.99 -0.07 9.63 16 14 O -0.56 -11.37 14.94 5.55 0.08 -11.29 16 15 N -0.61 -11.21 3.01 -155.81 -0.47 -11.68 16 16 C 0.09 1.49 5.69 -1.00 -0.01 1.49 16 17 C 0.14 2.61 5.53 -62.56 -0.35 2.26 16 18 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 19 C -0.15 -2.60 6.80 -22.30 -0.15 -2.76 16 20 C 0.10 1.91 5.20 -62.55 -0.33 1.58 16 21 H 0.11 2.13 8.04 -51.93 -0.42 1.72 16 22 C 0.18 4.29 4.78 -1.67 -0.01 4.28 16 23 N -0.60 -14.31 3.02 -156.34 -0.47 -14.78 16 24 C -0.23 -6.14 10.38 -15.06 -0.16 -6.30 16 25 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 26 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 27 N -0.92 -26.72 10.56 55.49 0.59 -26.14 16 28 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 32 H 0.06 0.49 6.33 -51.93 -0.33 0.16 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.88 4.96 -51.93 -0.26 0.62 16 38 H 0.08 1.17 7.52 -51.93 -0.39 0.78 16 39 H 0.13 2.29 7.01 -52.49 -0.37 1.92 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 45 H 0.07 0.74 5.42 -51.93 -0.28 0.46 16 46 H 0.07 1.35 7.97 -51.93 -0.41 0.93 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 51 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 52 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -31.52 401.92 -11.35 -42.87 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.61 Total: 6.90 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.50 Total: -8.71 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.36 Total: -52.60 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.52 -11.35 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032733354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.663 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds