Wall clock time and date at job start Wed Apr 1 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47284 * 2 1 4 4 H 1.09010 * 109.46962 * 304.45731 * 3 2 1 5 5 C 1.53002 * 109.47282 * 64.45398 * 3 2 1 6 6 C 1.50698 * 109.47121 * 187.01427 * 5 3 2 7 7 C 1.38257 * 119.99594 * 265.61640 * 6 5 3 8 8 C 1.38213 * 119.99673 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.00417 * 0.02562 * 8 7 6 10 10 C 1.38213 * 119.99401 * 359.97438 * 9 8 7 11 11 C 1.38222 * 120.00315 * 85.34606 * 6 5 3 12 12 C 1.50702 * 119.99365 * 359.97438 * 11 6 5 13 13 C 1.50693 * 109.47618 * 184.45747 * 3 2 1 14 14 O 1.21285 * 120.00461 * 273.96617 * 13 3 2 15 15 N 1.34777 * 120.00074 * 93.96182 * 13 3 2 16 16 C 1.49068 * 127.54704 * 356.05509 * 15 13 3 17 17 C 1.56017 * 105.20762 * 182.03032 * 16 15 13 18 18 H 1.08999 * 116.24279 * 158.16324 * 17 16 15 19 19 C 1.57079 * 99.60901 * 32.13443 * 17 16 15 20 20 C 1.49288 * 126.94617 * 174.85523 * 15 13 3 21 21 H 1.08997 * 116.15482 * 16.68245 * 20 15 13 22 22 C 1.56022 * 104.87398 * 246.88180 * 20 15 13 23 23 N 1.47873 * 105.10126 * 288.58416 * 22 20 15 24 24 C 1.36937 * 126.93970 * 182.00063 * 23 22 20 25 25 H 1.07997 * 119.99552 * 179.97438 * 24 23 22 26 26 C 1.38815 * 120.00296 * 359.97438 * 24 23 22 27 27 N 1.31615 * 119.99931 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99890 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47480 * 0.02562 * 28 26 24 30 30 H 1.48502 * 109.47169 * 120.00221 * 28 26 24 31 31 H 1.48501 * 109.47018 * 240.00044 * 28 26 24 32 32 H 1.08993 * 109.47389 * 301.74311 * 1 2 3 33 33 H 1.08998 * 109.47301 * 61.74502 * 1 2 3 34 34 H 1.09010 * 109.46862 * 181.74731 * 1 2 3 35 35 H 1.08996 * 109.47649 * 239.99885 * 2 1 3 36 36 H 1.09003 * 109.47564 * 119.99720 * 2 1 3 37 37 H 1.09000 * 109.47202 * 307.01196 * 5 3 2 38 38 H 1.08995 * 109.47098 * 67.01424 * 5 3 2 39 39 H 1.07990 * 120.00427 * 0.02562 * 7 6 5 40 40 H 1.08002 * 120.00404 * 180.02562 * 8 7 6 41 41 H 1.07991 * 120.00139 * 179.97438 * 9 8 7 42 42 H 1.08007 * 119.99422 * 179.97438 * 10 9 8 43 43 H 1.08997 * 109.47255 * 93.91481 * 12 11 6 44 44 H 1.09004 * 109.46427 * 213.91085 * 12 11 6 45 45 H 1.08996 * 109.47710 * 333.90890 * 12 11 6 46 46 H 1.09002 * 110.83213 * 62.79176 * 16 15 13 47 47 H 1.09001 * 109.69360 * 300.68175 * 16 15 13 48 48 H 1.08992 * 112.36543 * 191.71557 * 19 17 16 49 49 H 1.09000 * 112.37008 * 64.27098 * 19 17 16 50 50 H 1.09006 * 110.31223 * 47.48193 * 22 20 15 51 51 H 1.08992 * 110.31695 * 169.67485 * 22 20 15 52 52 H 0.96999 * 120.00185 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6128 1.9789 -0.8474 5 6 1.6235 2.1307 1.3015 6 6 1.9735 3.5947 1.2298 7 6 3.1737 4.0447 1.7482 8 6 3.4949 5.3873 1.6820 9 6 2.6160 6.2806 1.0979 10 6 1.4162 5.8307 0.5797 11 6 1.0973 4.4869 0.6409 12 6 -0.2079 3.9952 0.0699 13 6 3.5428 1.4440 -0.1104 14 8 4.2244 1.3448 0.8879 15 7 4.1297 1.5555 -1.3186 16 6 3.4633 1.6046 -2.6511 17 6 4.6266 1.6838 -3.6878 18 1 4.3905 1.3636 -4.7026 19 6 5.7155 0.8478 -2.9243 20 6 5.5907 1.6808 -1.5983 21 1 6.2612 1.4037 -0.7849 22 6 5.7658 3.1192 -2.1770 23 7 5.1635 3.0674 -3.5266 24 6 5.1095 4.0833 -4.4432 25 1 4.6397 3.9210 -5.4020 26 6 5.6584 5.3217 -4.1400 27 7 6.2314 5.5193 -2.9717 28 14 5.5840 6.7076 -5.3901 29 1 4.8922 6.2327 -6.6152 30 1 4.8373 7.8546 -4.8137 31 1 6.9629 7.1378 -5.7350 32 1 -0.3634 0.5406 0.8739 33 1 -0.3634 0.4865 -0.9052 34 1 -0.3633 -1.0273 0.0313 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.5483 2.0207 1.4428 38 1 2.1488 1.6722 2.1392 39 1 3.8604 3.3470 2.2041 40 1 4.4326 5.7389 2.0866 41 1 2.8668 7.3297 1.0466 42 1 0.7294 6.5285 0.1238 43 1 -0.9928 4.0947 0.8196 44 1 -0.4665 4.5877 -0.8078 45 1 -0.1083 2.9480 -0.2152 46 1 2.8234 2.4833 -2.7324 47 1 2.8810 0.6960 -2.8043 48 1 6.7018 0.9377 -3.3794 49 1 5.4206 -0.1928 -2.7896 50 1 5.2396 3.8437 -1.5554 51 1 6.8233 3.3740 -2.2441 52 1 6.6153 6.3845 -2.7599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032733354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:21 Heat of formation + Delta-G solvation = 14.008050 kcal Electronic energy + Delta-G solvation = -32158.103315 eV Core-core repulsion = 28315.745932 eV Total energy + Delta-G solvation = -3842.357383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.72111 -40.63218 -39.35767 -36.56757 -35.40303 -33.75052 -33.20050 -32.74469 -30.83022 -30.23582 -29.41678 -27.72634 -26.97389 -26.33907 -25.05762 -22.99974 -22.94224 -21.87293 -21.41089 -21.05778 -19.83618 -18.87661 -18.06088 -17.55321 -17.20430 -16.60318 -16.34430 -16.11728 -16.02829 -15.69005 -15.24082 -15.09413 -14.92220 -14.51470 -14.07194 -13.98024 -13.92344 -13.64578 -13.57023 -13.44319 -13.31713 -13.14110 -13.04936 -12.85512 -12.79362 -12.76892 -12.73133 -12.50536 -12.30152 -12.12406 -12.11002 -12.00125 -11.88384 -11.72718 -11.56483 -11.51464 -11.45461 -10.84589 -10.55964 -9.69919 -9.48324 -9.44723 -8.89965 -7.83461 -5.19076 0.42280 0.47804 1.45084 1.45351 1.55560 1.71394 2.07233 2.47826 2.80658 3.33266 3.36883 3.56702 3.71640 3.79236 3.89163 3.92841 3.96306 4.04377 4.06869 4.14528 4.21713 4.24430 4.36539 4.39968 4.48066 4.57058 4.61367 4.63778 4.68248 4.75229 4.82219 4.85537 4.87439 4.92843 4.94410 4.99930 5.03621 5.07169 5.13418 5.16927 5.20475 5.25046 5.28869 5.37587 5.45291 5.52239 5.55969 5.57823 5.61932 5.65643 5.75105 6.09977 6.14947 6.74873 7.03267 7.26989 7.71846 8.42660 9.27478 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.005036 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.556452 B = 5558.836713 C = 7005.908795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.088 4.088 4 H 0.091 0.909 5 C -0.059 4.059 6 C -0.096 4.096 7 C -0.119 4.119 8 C -0.145 4.145 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.088 4.088 12 C -0.114 4.114 13 C 0.530 3.470 14 O -0.588 6.588 15 N -0.611 5.611 16 C 0.095 3.905 17 C 0.135 3.865 18 H 0.137 0.863 19 C -0.129 4.129 20 C 0.097 3.903 21 H 0.105 0.895 22 C 0.195 3.805 23 N -0.614 5.614 24 C -0.228 4.228 25 H 0.096 0.904 26 C -0.069 4.069 27 N -0.954 5.954 28 Si 0.972 3.028 29 H -0.257 1.257 30 H -0.301 1.301 31 H -0.297 1.297 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.102 0.898 50 H -0.007 1.007 51 H 0.012 0.988 52 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -10.744 4.424 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.109 4.109 4 H 0.109 0.891 5 C -0.096 4.096 6 C -0.096 4.096 7 C -0.137 4.137 8 C -0.163 4.163 9 C -0.149 4.149 10 C -0.151 4.151 11 C -0.088 4.088 12 C -0.171 4.171 13 C 0.321 3.679 14 O -0.470 6.470 15 N -0.344 5.344 16 C -0.028 4.028 17 C 0.028 3.972 18 H 0.154 0.846 19 C -0.168 4.168 20 C -0.006 4.006 21 H 0.123 0.877 22 C 0.068 3.932 23 N -0.338 5.338 24 C -0.356 4.356 25 H 0.113 0.887 26 C -0.262 4.262 27 N -0.604 5.604 28 Si 0.801 3.199 29 H -0.181 1.181 30 H -0.229 1.229 31 H -0.225 1.225 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.118 0.882 48 H 0.096 0.904 49 H 0.120 0.880 50 H 0.011 0.989 51 H 0.030 0.970 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.854 -10.576 4.961 18.897 hybrid contribution 1.244 1.865 -0.110 2.245 sum -13.610 -8.711 4.850 16.871 Atomic orbital electron populations 1.21836 0.92737 1.03086 1.02891 1.21427 0.98179 0.91905 1.02813 1.21351 0.89584 0.99951 1.00005 0.89114 1.20582 1.03190 0.89388 0.96476 1.19941 0.94149 0.96543 0.99002 1.21203 0.96907 0.95374 1.00246 1.21261 0.99721 0.94151 1.01180 1.21323 0.94885 1.00085 0.98587 1.21295 0.97244 0.96072 1.00477 1.20143 0.97769 0.92960 0.97935 1.20934 0.92551 1.02391 1.01177 1.20834 0.91466 0.74651 0.80967 1.90591 1.66830 1.53000 1.36551 1.49591 1.07712 1.70653 1.06424 1.23373 0.96456 1.01143 0.81877 1.23580 0.91625 0.84188 0.97763 0.84588 1.24049 1.00267 0.98517 0.93962 1.24050 0.82828 0.96623 0.97128 0.87719 1.21411 0.95071 0.91195 0.85490 1.45452 1.66546 1.08402 1.13424 1.19551 1.30530 0.89759 0.95790 0.88668 1.25613 1.01415 1.00352 0.98776 1.70180 1.44509 1.22696 1.22976 0.85093 0.76698 0.79204 0.78894 1.18061 1.22867 1.22490 0.91559 0.91632 0.90991 0.91066 0.91793 0.86792 0.91214 0.87447 0.86727 0.85453 0.84319 0.89097 0.91010 0.90157 0.93218 0.88190 0.90437 0.87975 0.98883 0.96957 0.94941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.71 71.98 0.70 -1.18 16 2 C -0.11 -2.00 5.39 30.59 0.16 -1.83 16 3 C -0.09 -2.28 1.57 -11.54 -0.02 -2.29 16 4 H 0.09 2.35 6.31 -2.38 -0.02 2.33 16 5 C -0.06 -1.52 3.80 29.85 0.11 -1.40 16 6 C -0.10 -3.05 4.79 -19.86 -0.10 -3.15 16 7 C -0.12 -4.45 8.84 22.27 0.20 -4.26 16 8 C -0.15 -5.40 10.05 22.27 0.22 -5.18 16 9 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 10 C -0.13 -4.08 9.72 22.27 0.22 -3.87 16 11 C -0.09 -2.53 5.88 -19.86 -0.12 -2.65 16 12 C -0.11 -2.24 9.32 71.24 0.66 -1.58 16 13 C 0.53 18.86 6.14 87.65 0.54 19.40 16 14 O -0.59 -24.74 14.94 -3.05 -0.05 -24.78 16 15 N -0.61 -22.12 3.01 -765.25 -2.30 -24.42 16 16 C 0.10 3.01 5.69 86.93 0.49 3.51 16 17 C 0.13 4.65 5.53 46.93 0.26 4.91 16 18 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 19 C -0.13 -4.12 6.80 33.46 0.23 -3.89 16 20 C 0.10 3.90 5.20 46.93 0.24 4.14 16 21 H 0.10 4.25 8.04 -2.39 -0.02 4.23 16 22 C 0.19 9.95 4.78 87.16 0.42 10.37 16 23 N -0.61 -29.64 3.02 -648.55 -1.96 -31.60 16 24 C -0.23 -12.10 10.38 84.03 0.87 -11.23 16 25 H 0.10 4.67 7.83 -2.91 -0.02 4.65 16 26 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 27 N -0.95 -58.98 10.56 21.65 0.23 -58.75 16 28 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 29 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 30 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 31 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 32 H 0.07 0.76 6.33 -2.39 -0.02 0.75 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 2.12 4.96 -2.39 -0.01 2.11 16 38 H 0.07 1.98 7.52 -2.39 -0.02 1.96 16 39 H 0.11 4.30 7.01 -2.92 -0.02 4.28 16 40 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 41 H 0.13 3.89 8.06 -2.92 -0.02 3.86 16 42 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.35 8.11 -2.38 -0.02 1.33 16 45 H 0.08 1.39 5.42 -2.39 -0.01 1.37 16 46 H 0.05 1.80 7.97 -2.39 -0.02 1.78 16 47 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 49 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 50 H -0.01 -0.43 7.68 -2.38 -0.02 -0.45 16 51 H 0.01 0.71 7.46 -2.39 -0.02 0.70 16 52 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.80 401.92 4.63 -70.16 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.89 Total: 29.58 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.79 Total: -7.85 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.03 Total: -114.77 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.80 4.63 -70.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032733354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.171 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds