Wall clock time and date at job start Wed Apr 1 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 H 1.09002 * 109.49849 * 305.00197 * 3 2 1 5 5 C 1.53188 * 109.49646 * 65.06559 * 3 2 1 6 6 N 1.46929 * 108.77645 * 174.61842 * 5 3 2 7 7 C 1.34771 * 120.63182 * 126.41350 * 6 5 3 8 8 O 1.21277 * 120.00314 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.54349 * 110.82152 * 292.97108 * 9 7 6 11 11 C 1.51367 * 105.16857 * 215.42727 * 10 9 7 12 12 C 1.38494 * 130.38784 * 197.16796 * 11 10 9 13 13 C 1.38113 * 120.21572 * 180.02562 * 12 11 10 14 14 C 1.38251 * 119.93035 * 359.97438 * 13 12 11 15 15 C 1.38101 * 119.93830 * 359.97438 * 14 13 12 16 16 C 1.38222 * 109.76028 * 17.19027 * 11 10 9 17 17 C 1.51370 * 109.75714 * 359.97438 * 16 11 10 18 18 C 1.46930 * 118.73732 * 306.39400 * 6 5 3 19 19 C 1.53186 * 108.77576 * 53.60420 * 18 6 5 20 20 C 1.53041 * 109.52119 * 184.91910 * 3 2 1 21 21 H 1.09001 * 109.46229 * 58.65287 * 20 3 2 22 22 N 1.46493 * 109.46157 * 298.68466 * 20 3 2 23 23 C 1.36939 * 119.99933 * 155.00070 * 22 20 3 24 24 H 1.08000 * 120.00229 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00082 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99957 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00000 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47233 * 89.99692 * 27 25 23 29 29 H 1.48498 * 109.47201 * 210.00016 * 27 25 23 30 30 H 1.48498 * 109.46991 * 330.00097 * 27 25 23 31 31 H 1.08999 * 109.47195 * 300.00085 * 1 2 3 32 32 H 1.09000 * 109.47368 * 59.99778 * 1 2 3 33 33 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47195 * 239.99915 * 2 1 3 35 35 H 1.09000 * 109.47368 * 120.00222 * 2 1 3 36 36 H 1.08996 * 109.59171 * 294.40467 * 5 3 2 37 37 H 1.09002 * 109.58672 * 54.69177 * 5 3 2 38 38 H 1.09004 * 110.72705 * 56.59092 * 9 7 6 39 39 H 1.08999 * 110.30317 * 334.35197 * 10 9 7 40 40 H 1.08996 * 110.30327 * 96.50399 * 10 9 7 41 41 H 1.07998 * 119.89777 * 0.03124 * 12 11 10 42 42 H 1.07998 * 120.03304 * 179.97438 * 13 12 11 43 43 H 1.08007 * 120.02882 * 180.02562 * 14 13 12 44 44 H 1.07998 * 119.89351 * 180.02562 * 15 14 13 45 45 H 1.09001 * 110.30156 * 223.88841 * 17 16 11 46 46 H 1.08997 * 110.29780 * 101.73934 * 17 16 11 47 47 H 1.08992 * 109.58769 * 173.39532 * 18 6 5 48 48 H 1.09008 * 109.58247 * 293.67624 * 18 6 5 49 49 H 1.09000 * 109.49625 * 65.32030 * 19 18 6 50 50 H 1.09000 * 109.49684 * 185.38136 * 19 18 6 51 51 H 0.96993 * 120.00462 * 335.00610 * 22 20 3 52 52 H 0.97005 * 120.00042 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2423 3.4654 1.3496 7 6 1.4822 4.5572 1.5652 8 8 0.2862 4.4408 1.7289 9 6 2.1184 5.9229 1.6030 10 6 3.0452 6.0626 2.8293 11 6 2.8987 7.5019 3.2745 12 6 3.7004 8.2717 4.1008 13 6 3.3630 9.5834 4.3711 14 6 2.2217 10.1307 3.8150 15 6 1.4216 9.3650 2.9901 16 6 1.7573 8.0490 2.7191 17 6 1.0592 7.0149 1.8620 18 6 3.6927 3.5904 1.1505 19 6 4.0731 2.8890 -0.1571 20 6 3.5654 1.4456 -0.1237 21 1 3.8562 0.9370 -1.0428 22 7 4.1496 0.7493 1.0251 23 6 5.3879 0.1741 0.9198 24 1 5.9339 0.2341 -0.0101 25 6 5.9413 -0.4862 2.0082 26 7 5.2761 -0.5590 3.1416 27 14 7.6308 -1.2703 1.8647 28 1 8.6696 -0.2821 2.2516 29 1 7.7080 -2.4482 2.7657 30 1 7.8578 -1.7038 0.4627 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5511 2.2164 1.3560 37 1 1.9914 1.5379 2.1547 38 1 2.6611 6.1213 0.6787 39 1 2.7268 5.3868 3.6230 40 1 4.0781 5.8570 2.5482 41 1 4.5924 7.8450 4.5351 42 1 3.9902 10.1809 5.0161 43 1 1.9566 11.1565 4.0250 44 1 0.5304 9.7934 2.5558 45 1 0.7359 7.4597 0.9208 46 1 0.2064 6.5951 2.3954 47 1 3.9640 4.6444 1.0922 48 1 4.2174 3.1236 1.9842 49 1 3.6196 3.4149 -0.9973 50 1 5.1574 2.8912 -0.2690 51 1 3.6594 0.6956 1.8604 52 1 5.6627 -1.0207 3.9021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928715.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:50 Heat of formation + Delta-G solvation = -9.600461 kcal Electronic energy + Delta-G solvation = -30771.091113 eV Core-core repulsion = 26927.709989 eV Total energy + Delta-G solvation = -3843.381125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81184 -39.55905 -37.87518 -35.52422 -34.41887 -33.74849 -31.72596 -31.52404 -29.85420 -29.34422 -28.30591 -27.36058 -25.34572 -23.87339 -23.55251 -22.98754 -21.35608 -21.05128 -20.75747 -19.25572 -18.22730 -17.43746 -17.07991 -16.40843 -15.88307 -15.83383 -15.10662 -14.84800 -14.62942 -14.37282 -14.01668 -13.91554 -13.50672 -13.44070 -13.28487 -13.22478 -13.11026 -12.93035 -12.74119 -12.64255 -12.27579 -12.09352 -11.72809 -11.43360 -11.35232 -11.30631 -11.22109 -11.09167 -10.98409 -10.89824 -10.80611 -10.69751 -10.30368 -10.25445 -10.18331 -9.80083 -9.56928 -9.51904 -8.94522 -8.93256 -8.61808 -8.22952 -6.99794 -5.81315 -3.09713 1.22034 1.25786 2.78926 3.23385 3.39410 3.45662 3.46953 3.62354 4.20608 4.35145 4.55290 4.73321 4.85562 4.86402 4.92465 5.01820 5.11774 5.20455 5.27370 5.32965 5.37375 5.48368 5.48915 5.54266 5.57191 5.64258 5.66016 5.69129 5.72471 5.79886 5.82663 5.91310 5.94815 6.00708 6.08363 6.08993 6.14860 6.19647 6.30208 6.34818 6.36628 6.38337 6.40529 6.53249 6.56108 6.63047 6.69958 6.76299 6.86759 6.93199 7.00557 7.66411 7.71488 8.37156 8.37799 9.48937 10.05632 10.40726 11.40977 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.003139 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.988238 B = 8916.537884 C =10733.907965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.597 5.597 7 C 0.522 3.478 8 O -0.552 6.552 9 C -0.108 4.108 10 C -0.073 4.073 11 C -0.094 4.094 12 C -0.105 4.105 13 C -0.123 4.123 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.092 4.092 17 C -0.067 4.067 18 C 0.111 3.889 19 C -0.151 4.151 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 16.982 -2.697 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.328 5.328 7 C 0.309 3.691 8 O -0.430 6.430 9 C -0.129 4.129 10 C -0.110 4.110 11 C -0.094 4.094 12 C -0.123 4.123 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.092 4.092 17 C -0.104 4.104 18 C -0.012 4.012 19 C -0.192 4.192 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.134 16.806 -2.653 18.449 hybrid contribution 1.080 -0.434 0.255 1.192 sum -6.054 16.372 -2.398 17.620 Atomic orbital electron populations 1.21851 0.96826 1.01023 1.01343 1.21416 0.94264 0.95768 1.03353 1.21741 0.97354 0.96118 0.97035 0.91634 1.21688 0.98769 0.81657 0.98288 1.48093 1.08723 1.06482 1.69531 1.20219 0.86718 0.85769 0.76358 1.90645 1.14957 1.86496 1.50941 1.21931 0.97656 0.92909 1.00386 1.21089 1.00237 0.93034 0.96621 1.20554 0.95551 0.95684 0.97579 1.20658 0.99586 0.93886 0.98145 1.21025 0.97461 0.95200 1.00456 1.21018 0.95345 0.99709 0.97944 1.20603 0.99982 0.92949 0.99155 1.20636 0.95942 0.94198 0.98413 1.20940 0.97909 0.92216 0.99384 1.21844 0.79153 1.00158 1.00008 1.22534 1.01800 0.99335 0.95510 1.20216 0.89745 0.90628 0.92598 0.93178 1.42471 1.18985 1.64044 1.10569 1.19206 0.93532 1.27015 0.97062 0.91298 1.24696 0.98498 1.01483 0.96050 1.69646 1.38028 1.48075 1.02255 0.86252 0.84463 0.78771 0.77044 1.21840 1.21908 1.20876 0.92787 0.93403 0.93175 0.92052 0.90500 0.89633 0.90765 0.87661 0.89452 0.89434 0.86063 0.85979 0.86042 0.86279 0.90395 0.88237 0.90987 0.89626 0.93333 0.90744 0.78093 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.63 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.95 5.02 -3.71 -0.02 1.93 16 6 N -0.60 -9.26 2.97 -172.77 -0.51 -9.77 16 7 C 0.52 8.00 6.97 -10.99 -0.08 7.92 16 8 O -0.55 -10.02 14.92 5.56 0.08 -9.94 16 9 C -0.11 -1.31 2.45 -90.37 -0.22 -1.53 16 10 C -0.07 -0.86 5.39 -26.85 -0.14 -1.00 16 11 C -0.09 -1.10 6.14 -104.21 -0.64 -1.74 16 12 C -0.10 -1.12 10.04 -39.53 -0.40 -1.51 16 13 C -0.12 -1.17 10.05 -39.62 -0.40 -1.57 16 14 C -0.12 -1.13 10.05 -39.63 -0.40 -1.53 16 15 C -0.11 -1.11 10.04 -39.54 -0.40 -1.51 16 16 C -0.09 -1.06 6.14 -104.20 -0.64 -1.70 16 17 C -0.07 -0.79 6.10 -26.86 -0.16 -0.96 16 18 C 0.11 1.66 5.52 -3.71 -0.02 1.64 16 19 C -0.15 -2.37 5.78 -26.61 -0.15 -2.53 16 20 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.72 -16.01 3.73 -53.39 -0.20 -16.21 16 23 C -0.24 -6.04 9.93 -15.06 -0.15 -6.18 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -26.62 13.06 55.49 0.72 -25.89 16 27 Si 0.90 21.48 29.55 -169.99 -5.02 16.46 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 36 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 37 H 0.07 1.37 6.65 -51.93 -0.35 1.03 16 38 H 0.11 1.13 7.55 -51.93 -0.39 0.74 16 39 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 40 H 0.09 0.94 6.88 -51.93 -0.36 0.58 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.34 6.98 -51.93 -0.36 0.98 16 47 H 0.07 0.89 4.57 -51.93 -0.24 0.65 16 48 H 0.09 1.53 7.75 -51.92 -0.40 1.13 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.38 9.23 5.95 -40.82 -0.24 8.98 16 52 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -29.32 397.96 -11.40 -40.72 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.41 Total: 11.67 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -4.06 Total: -13.03 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.01 Total: -51.88 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.32 -11.40 -40.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928715.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.121 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds