Wall clock time and date at job start Wed Apr 1 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 H 1.09002 * 109.49849 * 305.00197 * 3 2 1 5 5 C 1.53188 * 109.49646 * 65.06559 * 3 2 1 6 6 N 1.46929 * 108.77645 * 174.61842 * 5 3 2 7 7 C 1.34771 * 120.63182 * 126.41350 * 6 5 3 8 8 O 1.21277 * 120.00314 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.54349 * 110.82152 * 292.97108 * 9 7 6 11 11 C 1.51367 * 105.16857 * 215.42727 * 10 9 7 12 12 C 1.38494 * 130.38784 * 197.16796 * 11 10 9 13 13 C 1.38113 * 120.21572 * 180.02562 * 12 11 10 14 14 C 1.38251 * 119.93035 * 359.97438 * 13 12 11 15 15 C 1.38101 * 119.93830 * 359.97438 * 14 13 12 16 16 C 1.38222 * 109.76028 * 17.19027 * 11 10 9 17 17 C 1.51370 * 109.75714 * 359.97438 * 16 11 10 18 18 C 1.46930 * 118.73732 * 306.39400 * 6 5 3 19 19 C 1.53186 * 108.77576 * 53.60420 * 18 6 5 20 20 C 1.53041 * 109.52119 * 184.91910 * 3 2 1 21 21 H 1.09001 * 109.46229 * 58.65287 * 20 3 2 22 22 N 1.46493 * 109.46157 * 298.68466 * 20 3 2 23 23 C 1.36939 * 119.99933 * 155.00070 * 22 20 3 24 24 H 1.08000 * 120.00229 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00082 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99957 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00000 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47233 * 89.99692 * 27 25 23 29 29 H 1.48498 * 109.47201 * 210.00016 * 27 25 23 30 30 H 1.48498 * 109.46991 * 330.00097 * 27 25 23 31 31 H 1.08999 * 109.47195 * 300.00085 * 1 2 3 32 32 H 1.09000 * 109.47368 * 59.99778 * 1 2 3 33 33 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47195 * 239.99915 * 2 1 3 35 35 H 1.09000 * 109.47368 * 120.00222 * 2 1 3 36 36 H 1.08996 * 109.59171 * 294.40467 * 5 3 2 37 37 H 1.09002 * 109.58672 * 54.69177 * 5 3 2 38 38 H 1.09004 * 110.72705 * 56.59092 * 9 7 6 39 39 H 1.08999 * 110.30317 * 334.35197 * 10 9 7 40 40 H 1.08996 * 110.30327 * 96.50399 * 10 9 7 41 41 H 1.07998 * 119.89777 * 0.03124 * 12 11 10 42 42 H 1.07998 * 120.03304 * 179.97438 * 13 12 11 43 43 H 1.08007 * 120.02882 * 180.02562 * 14 13 12 44 44 H 1.07998 * 119.89351 * 180.02562 * 15 14 13 45 45 H 1.09001 * 110.30156 * 223.88841 * 17 16 11 46 46 H 1.08997 * 110.29780 * 101.73934 * 17 16 11 47 47 H 1.08992 * 109.58769 * 173.39532 * 18 6 5 48 48 H 1.09008 * 109.58247 * 293.67624 * 18 6 5 49 49 H 1.09000 * 109.49625 * 65.32030 * 19 18 6 50 50 H 1.09000 * 109.49684 * 185.38136 * 19 18 6 51 51 H 0.96993 * 120.00462 * 335.00610 * 22 20 3 52 52 H 0.97005 * 120.00042 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2423 3.4654 1.3496 7 6 1.4822 4.5572 1.5652 8 8 0.2862 4.4408 1.7289 9 6 2.1184 5.9229 1.6030 10 6 3.0452 6.0626 2.8293 11 6 2.8987 7.5019 3.2745 12 6 3.7004 8.2717 4.1008 13 6 3.3630 9.5834 4.3711 14 6 2.2217 10.1307 3.8150 15 6 1.4216 9.3650 2.9901 16 6 1.7573 8.0490 2.7191 17 6 1.0592 7.0149 1.8620 18 6 3.6927 3.5904 1.1505 19 6 4.0731 2.8890 -0.1571 20 6 3.5654 1.4456 -0.1237 21 1 3.8562 0.9370 -1.0428 22 7 4.1496 0.7493 1.0251 23 6 5.3879 0.1741 0.9198 24 1 5.9339 0.2341 -0.0101 25 6 5.9413 -0.4862 2.0082 26 7 5.2761 -0.5590 3.1416 27 14 7.6308 -1.2703 1.8647 28 1 8.6696 -0.2821 2.2516 29 1 7.7080 -2.4482 2.7657 30 1 7.8578 -1.7038 0.4627 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5511 2.2164 1.3560 37 1 1.9914 1.5379 2.1547 38 1 2.6611 6.1213 0.6787 39 1 2.7268 5.3868 3.6230 40 1 4.0781 5.8570 2.5482 41 1 4.5924 7.8450 4.5351 42 1 3.9902 10.1809 5.0161 43 1 1.9566 11.1565 4.0250 44 1 0.5304 9.7934 2.5558 45 1 0.7359 7.4597 0.9208 46 1 0.2064 6.5951 2.3954 47 1 3.9640 4.6444 1.0922 48 1 4.2174 3.1236 1.9842 49 1 3.6196 3.4149 -0.9973 50 1 5.1574 2.8912 -0.2690 51 1 3.6594 0.6956 1.8604 52 1 5.6627 -1.0207 3.9021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037928715.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:49 Heat of formation + Delta-G solvation = -22.973810 kcal Electronic energy + Delta-G solvation = -30771.671025 eV Core-core repulsion = 26927.709989 eV Total energy + Delta-G solvation = -3843.961037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.90039 -40.61865 -39.18771 -36.47943 -35.85790 -35.28858 -33.39318 -32.33069 -31.02954 -30.77989 -29.55992 -28.24652 -26.68964 -25.49197 -25.03098 -24.02260 -22.33526 -22.01522 -21.83777 -20.52000 -19.59844 -19.22263 -18.35675 -17.28551 -16.99847 -16.88766 -16.55868 -15.99665 -15.92231 -15.68507 -15.51653 -15.22727 -14.77576 -14.74264 -14.43966 -14.31016 -14.12044 -14.06226 -13.89120 -13.70749 -13.59999 -13.15787 -13.03951 -12.87151 -12.83914 -12.63782 -12.37363 -12.24336 -12.16800 -12.13183 -12.09962 -12.01042 -11.82187 -11.65723 -11.55430 -11.43888 -11.10565 -10.88963 -10.71428 -9.70968 -9.58874 -9.42906 -8.89850 -7.86947 -5.12777 0.43662 0.48640 1.50096 1.50994 1.56153 1.58383 1.99226 2.60964 2.84629 3.27487 3.36226 3.47106 3.70244 3.83306 3.89930 4.00415 4.04652 4.08528 4.11096 4.17506 4.20242 4.30130 4.34009 4.38548 4.46075 4.48751 4.62051 4.62451 4.67271 4.69166 4.71754 4.81646 4.86542 4.88426 4.92681 5.01769 5.03249 5.08281 5.17263 5.18508 5.23497 5.24431 5.28314 5.33252 5.41573 5.52855 5.55810 5.62453 5.62825 5.68470 5.72882 6.12375 6.34763 6.46182 7.12575 7.42511 8.19179 8.42506 9.36257 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.003139 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.988238 B = 8916.537884 C =10733.907965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.085 0.915 5 C 0.124 3.876 6 N -0.597 5.597 7 C 0.521 3.479 8 O -0.582 6.582 9 C -0.101 4.101 10 C -0.069 4.069 11 C -0.112 4.112 12 C -0.118 4.118 13 C -0.126 4.126 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.063 4.063 18 C 0.118 3.882 19 C -0.143 4.143 20 C 0.172 3.828 21 H 0.047 0.953 22 N -0.724 5.724 23 C -0.223 4.223 24 H 0.075 0.925 25 C -0.073 4.073 26 N -0.969 5.969 27 Si 0.961 3.039 28 H -0.290 1.290 29 H -0.304 1.304 30 H -0.272 1.272 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.053 0.947 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.373 0.627 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 19.495 -4.335 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.103 0.897 5 C 0.002 3.998 6 N -0.328 5.328 7 C 0.311 3.689 8 O -0.462 6.462 9 C -0.122 4.122 10 C -0.106 4.106 11 C -0.112 4.112 12 C -0.135 4.135 13 C -0.143 4.143 14 C -0.140 4.140 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.100 4.100 18 C -0.004 4.004 19 C -0.184 4.184 20 C 0.063 3.937 21 H 0.065 0.935 22 N -0.365 5.365 23 C -0.355 4.355 24 H 0.093 0.907 25 C -0.265 4.265 26 N -0.620 5.620 27 Si 0.792 3.208 28 H -0.218 1.218 29 H -0.231 1.231 30 H -0.197 1.197 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.123 0.877 48 H 0.071 0.929 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.206 0.794 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.923 19.346 -4.346 21.002 hybrid contribution 0.951 -1.147 0.750 1.668 sum -5.972 18.199 -3.596 19.488 Atomic orbital electron populations 1.21782 0.94815 1.01883 1.01835 1.21342 0.96017 0.95325 1.01709 1.21647 0.95884 0.96341 0.97183 0.89660 1.21498 0.98548 0.82159 0.97636 1.48123 1.08943 1.06194 1.69521 1.20766 0.86337 0.86666 0.75175 1.90630 1.16426 1.87053 1.52128 1.21945 0.97907 0.90796 1.01529 1.21015 1.00522 0.93188 0.95880 1.20615 0.96370 0.95512 0.98684 1.20899 0.99948 0.94572 0.98131 1.21375 0.97785 0.94890 1.00280 1.21392 0.94797 1.00871 0.96944 1.20898 1.00751 0.92521 0.99249 1.20709 0.96090 0.94894 0.99019 1.20860 0.97001 0.92176 0.99959 1.21772 0.78443 1.01743 0.98451 1.22415 1.01527 0.97667 0.96799 1.20451 0.90977 0.91601 0.90662 0.93534 1.42584 1.18165 1.64352 1.11409 1.19550 0.94206 1.25073 0.96700 0.90698 1.25360 1.01683 1.03313 0.96158 1.69803 1.39487 1.49871 1.02853 0.85308 0.81015 0.77407 0.77035 1.21751 1.23146 1.19736 0.93317 0.91776 0.92224 0.91915 0.93824 0.89814 0.93586 0.85308 0.91527 0.88453 0.85212 0.83624 0.83368 0.84604 0.88924 0.90441 0.87724 0.92855 0.90440 0.91325 0.79359 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.67 71.98 0.70 -3.12 16 2 C -0.11 -3.33 5.19 30.59 0.16 -3.18 16 3 C -0.09 -2.83 2.14 -10.72 -0.02 -2.85 16 4 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 5 C 0.12 4.18 5.02 86.36 0.43 4.61 16 6 N -0.60 -18.31 2.97 -818.91 -2.43 -20.74 16 7 C 0.52 15.71 6.97 87.66 0.61 16.32 16 8 O -0.58 -21.19 14.92 -3.02 -0.05 -21.23 16 9 C -0.10 -2.32 2.45 -10.63 -0.03 -2.35 16 10 C -0.07 -1.58 5.39 30.52 0.16 -1.42 16 11 C -0.11 -2.51 6.14 -19.60 -0.12 -2.63 16 12 C -0.12 -2.33 10.04 22.30 0.22 -2.11 16 13 C -0.13 -2.07 10.05 22.24 0.22 -1.85 16 14 C -0.12 -1.93 10.05 22.24 0.22 -1.70 16 15 C -0.12 -2.12 10.04 22.30 0.22 -1.90 16 16 C -0.11 -2.34 6.14 -19.59 -0.12 -2.46 16 17 C -0.06 -1.41 6.10 30.51 0.19 -1.23 16 18 C 0.12 3.44 5.52 86.36 0.48 3.91 16 19 C -0.14 -4.26 5.78 30.67 0.18 -4.08 16 20 C 0.17 6.06 2.53 45.02 0.11 6.18 16 21 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 22 N -0.72 -32.87 3.73 -322.82 -1.20 -34.07 16 23 C -0.22 -11.44 9.93 84.03 0.83 -10.60 16 24 H 0.08 3.70 7.83 -2.91 -0.02 3.67 16 25 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 26 N -0.97 -57.25 13.06 21.65 0.28 -56.97 16 27 Si 0.96 44.78 29.55 68.60 2.03 46.81 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 30 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 31 H 0.05 1.32 6.70 -2.39 -0.02 1.30 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.66 7.70 -2.39 -0.02 1.65 16 36 H 0.08 2.85 5.72 -2.39 -0.01 2.84 16 37 H 0.05 1.81 6.65 -2.39 -0.02 1.79 16 38 H 0.13 2.38 7.55 -2.38 -0.02 2.36 16 39 H 0.07 1.79 7.89 -2.39 -0.02 1.77 16 40 H 0.10 1.98 6.88 -2.39 -0.02 1.96 16 41 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.08 2.10 6.98 -2.39 -0.02 2.08 16 47 H 0.10 2.35 4.57 -2.39 -0.01 2.34 16 48 H 0.05 1.93 7.75 -2.38 -0.02 1.91 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.37 18.71 5.95 -92.71 -0.55 18.16 16 52 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -64.73 397.96 3.92 -60.81 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: 0.36 Total: 39.37 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.92 Total: -13.97 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.35 Total: -111.79 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.73 3.92 -60.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928715.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.835 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds