Wall clock time and date at job start Wed Apr 1 2020 02:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 H 1.08999 * 109.49593 * 55.06563 * 3 2 1 5 5 C 1.53187 * 109.49617 * 294.99990 * 3 2 1 6 6 N 1.46926 * 108.77227 * 185.38194 * 5 3 2 7 7 C 1.34787 * 120.62918 * 233.33389 * 6 5 3 8 8 O 1.21276 * 119.99928 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99759 * 180.02562 * 7 6 5 10 10 C 1.54348 * 110.81938 * 292.96853 * 9 7 6 11 11 C 1.51368 * 105.16614 * 215.42665 * 10 9 7 12 12 C 1.38501 * 130.38875 * 197.19015 * 11 10 9 13 13 C 1.38108 * 120.21398 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.93387 * 0.02562 * 13 12 11 15 15 C 1.38105 * 119.93672 * 359.97438 * 14 13 12 16 16 C 1.38213 * 109.76280 * 17.19603 * 11 10 9 17 17 C 1.51372 * 109.75951 * 359.97438 * 16 11 10 18 18 C 1.46924 * 118.73991 * 53.60881 * 6 5 3 19 19 C 1.53187 * 108.77642 * 306.38981 * 18 6 5 20 20 C 1.53038 * 109.52227 * 175.14342 * 3 2 1 21 21 H 1.09003 * 109.46482 * 301.35512 * 20 3 2 22 22 N 1.46500 * 109.45931 * 61.32769 * 20 3 2 23 23 C 1.36940 * 120.00411 * 204.99738 * 22 20 3 24 24 H 1.08004 * 119.99420 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00433 * 180.02562 * 23 22 20 26 26 N 1.31629 * 119.99785 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00174 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47060 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47664 * 119.99893 * 27 25 23 30 30 H 1.48504 * 109.46763 * 240.00009 * 27 25 23 31 31 H 1.09006 * 109.46602 * 300.00099 * 1 2 3 32 32 H 1.08993 * 109.46790 * 59.99729 * 1 2 3 33 33 H 1.08991 * 109.47160 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46686 * 239.99677 * 2 1 3 35 35 H 1.09006 * 109.46956 * 120.00097 * 2 1 3 36 36 H 1.09002 * 109.58471 * 65.59613 * 5 3 2 37 37 H 1.08996 * 109.58894 * 305.16509 * 5 3 2 38 38 H 1.08992 * 110.72806 * 56.59432 * 9 7 6 39 39 H 1.08994 * 110.30582 * 334.35632 * 10 9 7 40 40 H 1.09000 * 110.30097 * 96.50832 * 10 9 7 41 41 H 1.07992 * 119.89357 * 0.02562 * 12 11 10 42 42 H 1.07998 * 120.03053 * 179.97438 * 13 12 11 43 43 H 1.08005 * 120.03347 * 179.97438 * 14 13 12 44 44 H 1.08001 * 119.88870 * 179.97438 * 15 14 13 45 45 H 1.08992 * 110.30960 * 223.88896 * 17 16 11 46 46 H 1.09003 * 110.30193 * 101.73347 * 17 16 11 47 47 H 1.09003 * 109.58516 * 66.18182 * 18 6 5 48 48 H 1.09002 * 109.58479 * 186.60340 * 18 6 5 49 49 H 1.08999 * 109.49975 * 294.68379 * 19 18 6 50 50 H 1.09004 * 109.52338 * 174.59879 * 19 18 6 51 51 H 0.97000 * 120.00093 * 25.00047 * 22 20 3 52 52 H 0.96997 * 119.99870 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9816 0.8424 5 6 1.6352 2.1279 -1.3087 6 7 2.2411 3.4658 -1.3489 7 6 1.4814 4.5574 -1.5684 8 8 0.2858 4.4407 -1.7345 9 6 2.1179 5.9229 -1.6073 10 6 2.6590 6.3158 -0.2162 11 6 2.4312 7.8084 -0.1097 12 6 2.9846 8.7416 0.7512 13 6 2.6204 10.0708 0.6626 14 6 1.7001 10.4721 -0.2878 15 6 1.1472 9.5431 -1.1472 16 6 1.5118 8.2098 -1.0605 17 6 1.0593 7.0145 -1.8715 18 6 3.6916 3.5907 -1.1514 19 6 4.0735 2.8888 0.1556 20 6 3.5656 1.4455 0.1221 21 1 3.8575 0.9365 1.0407 22 7 4.1487 0.7498 -1.0278 23 6 5.3870 0.1745 -0.9242 24 1 5.9337 0.2333 0.0054 25 6 5.9397 -0.4842 -2.0139 26 7 5.2736 -0.5555 -3.1470 27 14 7.6286 -1.2696 -1.8723 28 1 8.1636 -1.0498 -0.5046 29 1 7.5202 -2.7274 -2.1336 30 1 8.5450 -0.6553 -2.8665 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5497 2.2168 -1.3540 37 1 1.9914 1.5400 -2.1546 38 1 2.9073 5.9593 -2.3579 39 1 2.1085 5.7924 0.5655 40 1 3.7230 6.0897 -0.1466 41 1 3.7032 8.4288 1.4942 42 1 3.0534 10.7959 1.3357 43 1 1.4138 11.5111 -0.3583 44 1 0.4280 9.8573 -1.8891 45 1 1.0308 7.2655 -2.9317 46 1 0.0784 6.6787 -1.5351 47 1 4.2155 3.1220 -1.9845 48 1 3.9630 4.6447 -1.0929 49 1 3.6209 3.4143 0.9965 50 1 5.1579 2.8904 0.2665 51 1 3.6575 0.6967 -1.8626 52 1 5.6596 -1.0161 -3.9083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:53 Heat of formation + Delta-G solvation = -8.383721 kcal Electronic energy + Delta-G solvation = -30839.262091 eV Core-core repulsion = 26995.933728 eV Total energy + Delta-G solvation = -3843.328363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84421 -39.56545 -37.87659 -35.55948 -34.41917 -33.74834 -31.71368 -31.56979 -29.87758 -29.34388 -28.30950 -27.39373 -25.35249 -23.87830 -23.53784 -23.00325 -21.35165 -21.09801 -20.78562 -19.33940 -18.07641 -17.48580 -17.11577 -16.47593 -15.87020 -15.81668 -15.11134 -14.87714 -14.63441 -14.44930 -14.05024 -13.91281 -13.46529 -13.43039 -13.32038 -13.30434 -13.09854 -12.99392 -12.76804 -12.50403 -12.30295 -12.16127 -11.72140 -11.45849 -11.35895 -11.30404 -11.25416 -11.07815 -10.99969 -10.91537 -10.82063 -10.67788 -10.30609 -10.24933 -10.15332 -9.79865 -9.57224 -9.52615 -8.97268 -8.94444 -8.64704 -8.22598 -6.99701 -5.81474 -3.09873 1.18832 1.22545 2.78649 3.23367 3.39302 3.45655 3.47634 3.59117 4.18067 4.33968 4.55228 4.70722 4.82780 4.83447 4.89140 5.01815 5.08698 5.19564 5.29224 5.31394 5.35748 5.44317 5.46965 5.53922 5.56835 5.60040 5.64244 5.69282 5.71522 5.79953 5.82448 5.90693 5.92185 5.96996 6.06231 6.09842 6.14874 6.19942 6.27113 6.33361 6.35160 6.38221 6.40358 6.50098 6.56136 6.62928 6.70172 6.76211 6.83547 6.93234 7.00653 7.66752 7.71702 8.37050 8.37791 9.48834 10.05574 10.40536 11.40922 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.002935 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.821083 B = 9539.055181 C =10661.128403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.597 5.597 7 C 0.522 3.478 8 O -0.551 6.551 9 C -0.109 4.109 10 C -0.071 4.071 11 C -0.095 4.095 12 C -0.105 4.105 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.068 4.068 18 C 0.107 3.893 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.719 5.719 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 17.423 6.650 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.328 5.328 7 C 0.310 3.690 8 O -0.430 6.430 9 C -0.130 4.130 10 C -0.108 4.108 11 C -0.095 4.095 12 C -0.123 4.123 13 C -0.142 4.142 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.091 4.091 17 C -0.105 4.105 18 C -0.015 4.015 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.067 0.933 50 H 0.092 0.908 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.717 17.256 6.605 20.023 hybrid contribution 1.065 -0.444 -0.251 1.181 sum -6.652 16.812 6.354 19.164 Atomic orbital electron populations 1.21853 0.96830 1.01024 1.01339 1.21418 0.94263 0.95774 1.03347 1.21737 0.97355 0.96107 0.97026 0.91655 1.21694 0.98754 0.81657 0.98296 1.48093 1.08727 1.06486 1.69523 1.20220 0.86723 0.85739 0.76365 1.90644 1.14975 1.86471 1.50944 1.21946 0.99351 0.92592 0.99104 1.21089 1.02231 0.91402 0.96045 1.20557 0.97386 0.95312 0.96271 1.20633 1.00161 0.92582 0.98932 1.21018 0.98464 0.95659 0.99047 1.21024 0.97667 0.99262 0.96001 1.20618 1.00441 0.91812 0.99785 1.20642 0.96926 0.94208 0.97275 1.20948 0.99604 0.90186 0.99779 1.21883 0.79127 1.00422 1.00063 1.22518 1.01770 0.99300 0.95448 1.20216 0.89745 0.90651 0.92568 0.93186 1.42487 1.18992 1.64057 1.10564 1.19251 0.93503 1.26941 0.97028 0.91237 1.24702 0.98535 1.01518 0.96043 1.69661 1.37998 1.48127 1.02222 0.86177 0.84300 0.78933 0.77112 1.20652 1.21998 1.22005 0.93413 0.92782 0.93173 0.90498 0.92060 0.89626 0.90769 0.87549 0.89621 0.89405 0.86148 0.85993 0.86025 0.86236 0.90295 0.88237 0.89739 0.90747 0.93311 0.90757 0.78096 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.95 5.03 -3.71 -0.02 1.93 16 6 N -0.60 -9.26 2.97 -172.77 -0.51 -9.77 16 7 C 0.52 8.00 6.97 -10.98 -0.08 7.93 16 8 O -0.55 -10.02 14.92 5.56 0.08 -9.94 16 9 C -0.11 -1.32 2.46 -90.36 -0.22 -1.54 16 10 C -0.07 -0.78 5.39 -26.85 -0.14 -0.92 16 11 C -0.10 -1.06 6.14 -104.21 -0.64 -1.70 16 12 C -0.11 -1.04 10.04 -39.53 -0.40 -1.44 16 13 C -0.12 -1.11 10.05 -39.62 -0.40 -1.51 16 14 C -0.12 -1.09 10.05 -39.63 -0.40 -1.48 16 15 C -0.11 -1.08 10.04 -39.54 -0.40 -1.48 16 16 C -0.09 -1.02 6.14 -104.21 -0.64 -1.66 16 17 C -0.07 -0.80 6.10 -26.85 -0.16 -0.96 16 18 C 0.11 1.61 5.78 -3.71 -0.02 1.59 16 19 C -0.15 -2.32 5.78 -26.61 -0.15 -2.48 16 20 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.72 -16.03 3.72 -53.38 -0.20 -16.22 16 23 C -0.24 -6.02 9.93 -15.06 -0.15 -6.16 16 24 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 27 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 37 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16 38 H 0.11 1.20 7.81 -51.93 -0.41 0.79 16 39 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 40 H 0.09 0.87 6.58 -51.93 -0.34 0.53 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.32 6.98 -51.93 -0.36 0.96 16 47 H 0.08 1.53 7.74 -51.93 -0.40 1.12 16 48 H 0.07 0.92 4.10 -51.93 -0.21 0.70 16 49 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.38 9.25 5.94 -40.82 -0.24 9.00 16 52 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -29.43 397.69 -11.38 -40.80 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.38 Total: 11.30 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -4.06 Total: -12.68 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.01 Total: -51.97 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.43 -11.38 -40.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.421 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds