Wall clock time and date at job start Wed Apr 1 2020 02:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 H 1.08999 * 109.49593 * 55.06563 * 3 2 1 5 5 C 1.53187 * 109.49617 * 294.99990 * 3 2 1 6 6 N 1.46926 * 108.77227 * 185.38194 * 5 3 2 7 7 C 1.34787 * 120.62918 * 233.33389 * 6 5 3 8 8 O 1.21276 * 119.99928 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99759 * 180.02562 * 7 6 5 10 10 C 1.54348 * 110.81938 * 292.96853 * 9 7 6 11 11 C 1.51368 * 105.16614 * 215.42665 * 10 9 7 12 12 C 1.38501 * 130.38875 * 197.19015 * 11 10 9 13 13 C 1.38108 * 120.21398 * 180.02562 * 12 11 10 14 14 C 1.38250 * 119.93387 * 0.02562 * 13 12 11 15 15 C 1.38105 * 119.93672 * 359.97438 * 14 13 12 16 16 C 1.38213 * 109.76280 * 17.19603 * 11 10 9 17 17 C 1.51372 * 109.75951 * 359.97438 * 16 11 10 18 18 C 1.46924 * 118.73991 * 53.60881 * 6 5 3 19 19 C 1.53187 * 108.77642 * 306.38981 * 18 6 5 20 20 C 1.53038 * 109.52227 * 175.14342 * 3 2 1 21 21 H 1.09003 * 109.46482 * 301.35512 * 20 3 2 22 22 N 1.46500 * 109.45931 * 61.32769 * 20 3 2 23 23 C 1.36940 * 120.00411 * 204.99738 * 22 20 3 24 24 H 1.08004 * 119.99420 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00433 * 180.02562 * 23 22 20 26 26 N 1.31629 * 119.99785 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00174 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47060 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47664 * 119.99893 * 27 25 23 30 30 H 1.48504 * 109.46763 * 240.00009 * 27 25 23 31 31 H 1.09006 * 109.46602 * 300.00099 * 1 2 3 32 32 H 1.08993 * 109.46790 * 59.99729 * 1 2 3 33 33 H 1.08991 * 109.47160 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46686 * 239.99677 * 2 1 3 35 35 H 1.09006 * 109.46956 * 120.00097 * 2 1 3 36 36 H 1.09002 * 109.58471 * 65.59613 * 5 3 2 37 37 H 1.08996 * 109.58894 * 305.16509 * 5 3 2 38 38 H 1.08992 * 110.72806 * 56.59432 * 9 7 6 39 39 H 1.08994 * 110.30582 * 334.35632 * 10 9 7 40 40 H 1.09000 * 110.30097 * 96.50832 * 10 9 7 41 41 H 1.07992 * 119.89357 * 0.02562 * 12 11 10 42 42 H 1.07998 * 120.03053 * 179.97438 * 13 12 11 43 43 H 1.08005 * 120.03347 * 179.97438 * 14 13 12 44 44 H 1.08001 * 119.88870 * 179.97438 * 15 14 13 45 45 H 1.08992 * 110.30960 * 223.88896 * 17 16 11 46 46 H 1.09003 * 110.30193 * 101.73347 * 17 16 11 47 47 H 1.09003 * 109.58516 * 66.18182 * 18 6 5 48 48 H 1.09002 * 109.58479 * 186.60340 * 18 6 5 49 49 H 1.08999 * 109.49975 * 294.68379 * 19 18 6 50 50 H 1.09004 * 109.52338 * 174.59879 * 19 18 6 51 51 H 0.97000 * 120.00093 * 25.00047 * 22 20 3 52 52 H 0.96997 * 119.99870 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9816 0.8424 5 6 1.6352 2.1279 -1.3087 6 7 2.2411 3.4658 -1.3489 7 6 1.4814 4.5574 -1.5684 8 8 0.2858 4.4407 -1.7345 9 6 2.1179 5.9229 -1.6073 10 6 2.6590 6.3158 -0.2162 11 6 2.4312 7.8084 -0.1097 12 6 2.9846 8.7416 0.7512 13 6 2.6204 10.0708 0.6626 14 6 1.7001 10.4721 -0.2878 15 6 1.1472 9.5431 -1.1472 16 6 1.5118 8.2098 -1.0605 17 6 1.0593 7.0145 -1.8715 18 6 3.6916 3.5907 -1.1514 19 6 4.0735 2.8888 0.1556 20 6 3.5656 1.4455 0.1221 21 1 3.8575 0.9365 1.0407 22 7 4.1487 0.7498 -1.0278 23 6 5.3870 0.1745 -0.9242 24 1 5.9337 0.2333 0.0054 25 6 5.9397 -0.4842 -2.0139 26 7 5.2736 -0.5555 -3.1470 27 14 7.6286 -1.2696 -1.8723 28 1 8.1636 -1.0498 -0.5046 29 1 7.5202 -2.7274 -2.1336 30 1 8.5450 -0.6553 -2.8665 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5497 2.2168 -1.3540 37 1 1.9914 1.5400 -2.1546 38 1 2.9073 5.9593 -2.3579 39 1 2.1085 5.7924 0.5655 40 1 3.7230 6.0897 -0.1466 41 1 3.7032 8.4288 1.4942 42 1 3.0534 10.7959 1.3357 43 1 1.4138 11.5111 -0.3583 44 1 0.4280 9.8573 -1.8891 45 1 1.0308 7.2655 -2.9317 46 1 0.0784 6.6787 -1.5351 47 1 4.2155 3.1220 -1.9845 48 1 3.9630 4.6447 -1.0929 49 1 3.6209 3.4143 0.9965 50 1 5.1579 2.8904 0.2665 51 1 3.6575 0.6967 -1.8626 52 1 5.6596 -1.0161 -3.9083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037928721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:52 Heat of formation + Delta-G solvation = -21.848203 kcal Electronic energy + Delta-G solvation = -30839.845955 eV Core-core repulsion = 26995.933728 eV Total energy + Delta-G solvation = -3843.912227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.91411 -40.59749 -39.18625 -36.48606 -35.85455 -35.28620 -33.38801 -32.32113 -31.03544 -30.76948 -29.55631 -28.23290 -26.69375 -25.48040 -25.03489 -24.00042 -22.26589 -22.06114 -21.84547 -20.60812 -19.47796 -19.21386 -18.39603 -17.33543 -16.99713 -16.81641 -16.48216 -16.05954 -15.96139 -15.71747 -15.44302 -15.30043 -14.79797 -14.60790 -14.55086 -14.21690 -14.13656 -14.07110 -13.88614 -13.67851 -13.54668 -13.22969 -13.00470 -12.87819 -12.86081 -12.63428 -12.36539 -12.25514 -12.15106 -12.13425 -12.04033 -11.96909 -11.82093 -11.64379 -11.54231 -11.44125 -11.10344 -10.89882 -10.72204 -9.69215 -9.58341 -9.41148 -8.89780 -7.87089 -5.12884 0.45380 0.50432 1.49398 1.51189 1.56180 1.59348 1.99355 2.61003 2.86348 3.28120 3.37943 3.47232 3.69524 3.84608 3.87974 3.99740 4.06058 4.09283 4.11778 4.19534 4.22517 4.31133 4.33212 4.39082 4.45687 4.48735 4.62022 4.64067 4.68235 4.70048 4.73865 4.82687 4.86548 4.88023 4.94724 5.02486 5.03956 5.07550 5.18045 5.18614 5.24336 5.24982 5.28592 5.34599 5.41564 5.53012 5.57270 5.62860 5.64571 5.68850 5.74457 6.13996 6.34929 6.46286 7.12538 7.42496 8.19195 8.42304 9.36404 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.002935 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.821083 B = 9539.055181 C =10661.128403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.124 3.876 6 N -0.597 5.597 7 C 0.522 3.478 8 O -0.582 6.582 9 C -0.105 4.105 10 C -0.064 4.064 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.125 4.125 14 C -0.124 4.124 15 C -0.119 4.119 16 C -0.109 4.109 17 C -0.064 4.064 18 C 0.115 3.885 19 C -0.141 4.141 20 C 0.172 3.828 21 H 0.047 0.953 22 N -0.724 5.724 23 C -0.221 4.221 24 H 0.076 0.924 25 C -0.074 4.074 26 N -0.969 5.969 27 Si 0.961 3.039 28 H -0.266 1.266 29 H -0.302 1.302 30 H -0.299 1.299 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.131 0.869 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.107 0.893 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.373 0.627 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 19.819 8.820 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.110 4.110 4 H 0.103 0.897 5 C 0.001 3.999 6 N -0.328 5.328 7 C 0.311 3.689 8 O -0.463 6.463 9 C -0.126 4.126 10 C -0.101 4.101 11 C -0.110 4.110 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.109 4.109 17 C -0.101 4.101 18 C -0.007 4.007 19 C -0.182 4.182 20 C 0.063 3.937 21 H 0.065 0.935 22 N -0.366 5.366 23 C -0.353 4.353 24 H 0.094 0.906 25 C -0.266 4.266 26 N -0.621 5.621 27 Si 0.793 3.207 28 H -0.190 1.190 29 H -0.230 1.230 30 H -0.227 1.227 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.136 0.864 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.149 0.851 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.125 0.875 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.206 0.794 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.294 19.681 8.832 22.771 hybrid contribution 0.852 -1.109 -0.863 1.644 sum -6.441 18.571 7.969 21.210 Atomic orbital electron populations 1.21784 0.94856 1.01880 1.01809 1.21344 0.95986 0.95340 1.01719 1.21641 0.95930 0.96311 0.97154 0.89742 1.21506 0.98524 0.82160 0.97662 1.48125 1.08953 1.06183 1.69517 1.20766 0.86338 0.86627 0.75182 1.90629 1.16454 1.87026 1.52167 1.21951 0.99631 0.90467 1.00556 1.21027 1.02779 0.91640 0.94658 1.20639 0.98017 0.95376 0.96946 1.20907 1.00384 0.92860 0.98991 1.21390 0.97994 0.95838 0.99103 1.21376 0.97125 1.00307 0.95339 1.20881 1.00809 0.91563 1.00445 1.20679 0.97843 0.94571 0.97824 1.20854 0.98460 0.90524 1.00306 1.21820 0.78386 1.02004 0.98528 1.22389 1.01528 0.97558 0.96691 1.20453 0.90933 0.91667 0.90625 0.93505 1.42605 1.18171 1.64364 1.11413 1.19593 0.94157 1.24924 0.96644 0.90622 1.25367 1.01727 1.03382 0.96167 1.69814 1.39477 1.49972 1.02838 0.85233 0.80826 0.77277 0.77403 1.19048 1.23003 1.22682 0.91838 0.93311 0.92213 0.93801 0.91906 0.89840 0.93547 0.86368 0.90226 0.87972 0.84555 0.83521 0.83604 0.85066 0.89765 0.90214 0.93084 0.87503 0.90365 0.91266 0.79374 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.67 71.98 0.70 -3.13 16 2 C -0.11 -3.33 5.19 30.60 0.16 -3.17 16 3 C -0.09 -2.82 2.14 -10.72 -0.02 -2.84 16 4 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 5 C 0.12 4.17 5.03 86.36 0.43 4.60 16 6 N -0.60 -18.30 2.97 -818.91 -2.43 -20.73 16 7 C 0.52 15.76 6.97 87.66 0.61 16.37 16 8 O -0.58 -21.28 14.92 -3.02 -0.04 -21.33 16 9 C -0.10 -2.43 2.46 -10.63 -0.03 -2.46 16 10 C -0.06 -1.27 5.39 30.52 0.16 -1.11 16 11 C -0.11 -2.22 6.14 -19.60 -0.12 -2.34 16 12 C -0.11 -1.94 10.04 22.30 0.22 -1.71 16 13 C -0.13 -1.85 10.05 22.24 0.22 -1.63 16 14 C -0.12 -1.86 10.05 22.24 0.22 -1.64 16 15 C -0.12 -2.15 10.04 22.30 0.22 -1.93 16 16 C -0.11 -2.32 6.14 -19.60 -0.12 -2.44 16 17 C -0.06 -1.47 6.10 30.52 0.19 -1.29 16 18 C 0.11 3.33 5.78 86.36 0.50 3.82 16 19 C -0.14 -4.13 5.78 30.67 0.18 -3.95 16 20 C 0.17 6.03 2.53 45.02 0.11 6.14 16 21 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 22 N -0.72 -32.81 3.72 -322.81 -1.20 -34.01 16 23 C -0.22 -11.30 9.93 84.03 0.83 -10.47 16 24 H 0.08 3.73 7.83 -2.91 -0.02 3.70 16 25 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 26 N -0.97 -57.36 13.06 21.65 0.28 -57.07 16 27 Si 0.96 44.79 29.55 68.60 2.03 46.82 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 30 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.32 6.70 -2.39 -0.02 1.31 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.67 7.70 -2.39 -0.02 1.65 16 35 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.08 2.84 5.72 -2.39 -0.01 2.83 16 37 H 0.05 1.82 6.64 -2.39 -0.02 1.80 16 38 H 0.12 2.47 7.81 -2.39 -0.02 2.45 16 39 H 0.08 1.69 7.89 -2.39 -0.02 1.67 16 40 H 0.10 1.69 6.58 -2.39 -0.02 1.68 16 41 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.08 2.14 6.98 -2.39 -0.02 2.13 16 47 H 0.05 1.86 7.74 -2.39 -0.02 1.84 16 48 H 0.11 2.39 4.10 -2.39 -0.01 2.38 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 51 H 0.37 18.69 5.94 -92.71 -0.55 18.13 16 52 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.83 397.69 3.94 -60.89 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.37 Total: 38.19 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.95 Total: -12.75 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -3.35 Total: -111.82 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.33 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.83 3.94 -60.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.040 kcal (2) G-P(sol) polarization free energy of solvation -64.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds