Wall clock time and date at job start Wed Apr 1 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.09000 * 109.52249 * 305.07742 * 3 2 1 5 5 C 1.53191 * 109.49775 * 65.16136 * 3 2 1 6 6 N 1.46931 * 108.77246 * 174.58501 * 5 3 2 7 7 C 1.34778 * 120.62842 * 126.36899 * 6 5 3 8 8 O 1.21290 * 120.00097 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00249 * 180.02562 * 7 6 5 10 10 C 1.54350 * 110.82042 * 292.97074 * 9 7 6 11 11 C 1.51365 * 105.16909 * 215.42157 * 10 9 7 12 12 C 1.38501 * 130.38952 * 197.18825 * 11 10 9 13 13 C 1.38102 * 120.21446 * 180.02562 * 12 11 10 14 14 C 1.38256 * 119.93565 * 0.02562 * 13 12 11 15 15 C 1.38106 * 119.93524 * 359.97438 * 14 13 12 16 16 C 1.38215 * 109.76000 * 17.19540 * 11 10 9 17 17 C 1.51364 * 109.75930 * 359.97438 * 16 11 10 18 18 C 1.46927 * 118.74249 * 306.39035 * 6 5 3 19 19 C 1.53190 * 108.77356 * 53.61180 * 18 6 5 20 20 C 1.53042 * 109.31459 * 305.36498 * 19 18 6 21 21 H 1.09001 * 109.45863 * 301.36230 * 20 19 18 22 22 N 1.46492 * 109.46477 * 181.38900 * 20 19 18 23 23 C 1.36935 * 120.00376 * 84.99661 * 22 20 19 24 24 H 1.08003 * 119.99724 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00063 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99887 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47297 * 89.99941 * 27 25 23 29 29 H 1.48503 * 109.47261 * 330.00122 * 27 25 23 30 30 H 1.48500 * 109.47454 * 210.00115 * 27 25 23 31 31 H 1.09001 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47152 * 299.99712 * 1 2 3 33 33 H 1.09003 * 109.47339 * 60.00061 * 1 2 3 34 34 H 1.09001 * 109.47152 * 240.00288 * 2 1 3 35 35 H 1.09003 * 109.47339 * 119.99939 * 2 1 3 36 36 H 1.08997 * 109.58736 * 54.80506 * 5 3 2 37 37 H 1.08991 * 109.70583 * 294.43997 * 5 3 2 38 38 H 1.08993 * 110.72724 * 56.59439 * 9 7 6 39 39 H 1.08997 * 110.30513 * 334.35585 * 10 9 7 40 40 H 1.09008 * 110.30070 * 96.50184 * 10 9 7 41 41 H 1.07997 * 119.89185 * 0.02562 * 12 11 10 42 42 H 1.07995 * 120.03094 * 180.02562 * 13 12 11 43 43 H 1.07996 * 120.03582 * 179.97438 * 14 13 12 44 44 H 1.07994 * 119.89260 * 180.02562 * 15 14 13 45 45 H 1.08995 * 110.30777 * 223.88961 * 17 16 11 46 46 H 1.09007 * 110.39202 * 101.77427 * 17 16 11 47 47 H 1.08994 * 109.58595 * 293.82578 * 18 6 5 48 48 H 1.08998 * 109.58326 * 173.39533 * 18 6 5 49 49 H 1.08998 * 109.49988 * 185.41053 * 19 18 6 50 50 H 1.08998 * 109.50105 * 65.31372 * 19 18 6 51 51 H 0.97009 * 119.99477 * 265.00246 * 22 20 19 52 52 H 0.97006 * 119.99732 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4644 1.3506 7 6 1.4857 4.5566 1.5671 8 8 0.2896 4.4406 1.7316 9 6 2.1225 5.9218 1.6049 10 6 3.0502 6.0607 2.8307 11 6 2.9047 7.4999 3.2765 12 6 3.7076 8.2692 4.1022 13 6 3.3711 9.5809 4.3731 14 6 2.2289 10.1287 3.8191 15 6 1.4270 9.3631 2.9955 16 6 1.7633 8.0478 2.7220 17 6 1.0640 7.0144 1.8651 18 6 3.6953 3.5888 1.1498 19 6 4.0737 2.8882 -0.1589 20 6 3.5652 1.4451 -0.1258 21 1 4.0006 0.9262 0.7282 22 7 3.9542 0.7621 -1.3620 23 6 5.1918 0.1851 -1.4653 24 1 5.8810 0.2333 -0.6352 25 6 5.5604 -0.4616 -2.6369 26 7 6.7498 -1.0166 -2.7360 27 14 4.3681 -0.5456 -4.0724 28 1 4.5696 0.6332 -4.9530 29 1 2.9746 -0.5474 -3.5591 30 1 4.6121 -1.7891 -4.8466 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9965 1.5378 2.1548 37 1 0.5534 2.2160 1.3611 38 1 2.6647 6.1203 0.6805 39 1 2.7320 5.3848 3.6244 40 1 4.0828 5.8547 2.5488 41 1 4.5998 7.8420 4.5356 42 1 3.9995 10.1782 5.0170 43 1 1.9639 11.1541 4.0302 44 1 0.5352 9.7918 2.5629 45 1 0.7403 7.4595 0.9243 46 1 0.2106 6.5942 2.3974 47 1 4.2209 3.1190 1.9810 48 1 3.9669 4.6428 1.0918 49 1 5.1577 2.8895 -0.2720 50 1 3.6192 3.4148 -0.9981 51 1 3.3350 0.7186 -2.1075 52 1 7.0076 -1.4682 -3.5549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:56 Heat of formation + Delta-G solvation = -7.624814 kcal Electronic energy + Delta-G solvation = -30327.682786 eV Core-core repulsion = 26484.387332 eV Total energy + Delta-G solvation = -3843.295454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.98206 -39.69148 -37.98755 -35.68572 -34.87857 -33.89510 -31.83026 -31.65808 -30.03514 -29.92659 -28.62627 -27.51401 -25.50280 -24.05134 -23.43046 -22.39556 -21.36479 -21.18402 -20.85317 -19.90011 -18.92633 -17.71338 -17.26696 -16.55845 -16.07117 -16.03596 -15.21351 -15.08838 -14.75319 -14.46089 -14.23770 -13.86940 -13.70139 -13.54312 -13.39441 -13.36516 -13.20745 -13.01421 -12.89061 -12.76400 -12.39872 -12.31071 -11.92327 -11.87215 -11.49013 -11.44534 -11.43389 -11.37687 -11.07463 -11.05184 -10.97466 -10.80943 -10.43643 -10.34911 -10.23589 -9.79920 -9.73790 -9.61171 -9.05700 -8.96207 -8.74651 -8.56622 -7.31135 -5.81534 -3.17004 1.09728 1.13906 2.56732 2.97472 3.33819 3.37212 3.42648 3.50095 4.04626 4.17733 4.53979 4.54984 4.71055 4.74372 4.79179 4.84158 4.95929 5.02644 5.04245 5.12471 5.20040 5.26645 5.33090 5.33987 5.44947 5.46178 5.48033 5.51160 5.56707 5.57765 5.61248 5.76344 5.80291 5.86093 5.90205 5.94751 5.99392 6.01282 6.07193 6.18068 6.21994 6.25439 6.26287 6.31556 6.39640 6.43689 6.52926 6.68284 6.74565 6.77563 6.91371 7.42660 7.93972 8.14459 8.37613 9.15790 9.88672 10.08521 11.36692 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.002576 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.662975 B =10866.035095 C =11860.221062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.603 5.603 7 C 0.524 3.476 8 O -0.546 6.546 9 C -0.110 4.110 10 C -0.071 4.071 11 C -0.097 4.097 12 C -0.105 4.105 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.091 4.091 17 C -0.068 4.068 18 C 0.103 3.897 19 C -0.153 4.153 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.277 1.277 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 18.353 13.440 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.335 5.335 7 C 0.312 3.688 8 O -0.424 6.424 9 C -0.131 4.131 10 C -0.108 4.108 11 C -0.097 4.097 12 C -0.123 4.123 13 C -0.141 4.141 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.091 4.091 17 C -0.105 4.105 18 C -0.020 4.020 19 C -0.194 4.194 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.077 0.923 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.192 18.157 13.558 24.847 hybrid contribution -0.514 -0.060 -1.253 1.356 sum -10.706 18.097 12.305 24.363 Atomic orbital electron populations 1.21851 0.96639 1.01172 1.01425 1.21466 0.94545 0.95707 1.03431 1.21827 0.97607 0.96285 0.97079 0.91305 1.21731 0.99502 0.81512 0.97578 1.48144 1.08628 1.06653 1.70119 1.20262 0.86722 0.85750 0.76044 1.90665 1.14882 1.86434 1.50441 1.21960 0.97795 0.92770 1.00574 1.21071 1.00108 0.93181 0.96452 1.20518 0.95684 0.95640 0.97825 1.20633 0.99491 0.93922 0.98213 1.21032 0.97439 0.95189 1.00448 1.21041 0.95251 0.99751 0.97800 1.20626 1.00013 0.92941 0.99034 1.20616 0.95929 0.94230 0.98312 1.20944 0.97817 0.92222 0.99559 1.21992 0.79337 1.01446 0.99206 1.22659 1.02673 0.98796 0.95261 1.20156 0.90675 0.90661 0.90633 0.92532 1.42777 1.16518 1.66279 1.13100 1.19039 0.90419 1.27322 1.00393 0.89206 1.24657 0.96417 1.00254 0.97694 1.69698 1.19339 1.41548 1.27498 0.86599 0.81155 0.77326 0.83701 1.21192 1.20275 1.21798 0.93052 0.92945 0.93103 0.90432 0.91946 0.91485 0.89067 0.87374 0.89642 0.89471 0.86104 0.85923 0.85960 0.86202 0.90255 0.88231 0.91131 0.90060 0.90007 0.92265 0.80617 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.68 37.16 0.36 -1.60 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.83 16 3 C -0.11 -1.62 1.92 -90.50 -0.17 -1.79 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.60 5.33 -3.71 -0.02 1.58 16 6 N -0.60 -7.66 2.97 -172.77 -0.51 -8.17 16 7 C 0.52 6.88 6.97 -10.98 -0.08 6.81 16 8 O -0.55 -8.83 14.92 5.55 0.08 -8.75 16 9 C -0.11 -1.13 2.45 -90.37 -0.22 -1.36 16 10 C -0.07 -0.65 5.39 -26.85 -0.14 -0.79 16 11 C -0.10 -0.95 6.14 -104.21 -0.64 -1.59 16 12 C -0.10 -0.92 10.04 -39.53 -0.40 -1.32 16 13 C -0.12 -0.99 10.05 -39.62 -0.40 -1.39 16 14 C -0.12 -0.97 10.05 -39.62 -0.40 -1.37 16 15 C -0.11 -0.98 10.04 -39.53 -0.40 -1.37 16 16 C -0.09 -0.92 6.14 -104.21 -0.64 -1.56 16 17 C -0.07 -0.71 6.11 -26.86 -0.16 -0.87 16 18 C 0.10 1.20 5.78 -3.71 -0.02 1.17 16 19 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 20 C 0.19 3.27 2.19 -67.89 -0.15 3.12 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -16.34 4.13 -53.39 -0.22 -16.56 16 23 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 24 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -28.51 13.97 55.49 0.78 -27.73 16 27 Si 0.88 21.59 27.73 -169.99 -4.71 16.87 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.36 7.22 -51.93 -0.37 0.98 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.28 5.73 -51.93 -0.30 0.99 16 38 H 0.11 1.02 7.55 -51.93 -0.39 0.63 16 39 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 40 H 0.09 0.67 6.88 -51.92 -0.36 0.32 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 1.18 6.98 -51.93 -0.36 0.82 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.77 4.57 -51.93 -0.24 0.53 16 49 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.36 8.00 5.38 -40.82 -0.22 7.78 16 52 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -31.57 398.46 -11.12 -42.68 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.51 Total: 8.81 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -4.03 Total: -13.15 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.04 Total: -52.47 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.57 -11.12 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.058 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds