Wall clock time and date at job start Wed Apr 1 2020 02:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.09000 * 109.52249 * 305.07742 * 3 2 1 5 5 C 1.53191 * 109.49775 * 65.16136 * 3 2 1 6 6 N 1.46931 * 108.77246 * 174.58501 * 5 3 2 7 7 C 1.34778 * 120.62842 * 126.36899 * 6 5 3 8 8 O 1.21290 * 120.00097 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00249 * 180.02562 * 7 6 5 10 10 C 1.54350 * 110.82042 * 292.97074 * 9 7 6 11 11 C 1.51365 * 105.16909 * 215.42157 * 10 9 7 12 12 C 1.38501 * 130.38952 * 197.18825 * 11 10 9 13 13 C 1.38102 * 120.21446 * 180.02562 * 12 11 10 14 14 C 1.38256 * 119.93565 * 0.02562 * 13 12 11 15 15 C 1.38106 * 119.93524 * 359.97438 * 14 13 12 16 16 C 1.38215 * 109.76000 * 17.19540 * 11 10 9 17 17 C 1.51364 * 109.75930 * 359.97438 * 16 11 10 18 18 C 1.46927 * 118.74249 * 306.39035 * 6 5 3 19 19 C 1.53190 * 108.77356 * 53.61180 * 18 6 5 20 20 C 1.53042 * 109.31459 * 305.36498 * 19 18 6 21 21 H 1.09001 * 109.45863 * 301.36230 * 20 19 18 22 22 N 1.46492 * 109.46477 * 181.38900 * 20 19 18 23 23 C 1.36935 * 120.00376 * 84.99661 * 22 20 19 24 24 H 1.08003 * 119.99724 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00063 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99887 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47297 * 89.99941 * 27 25 23 29 29 H 1.48503 * 109.47261 * 330.00122 * 27 25 23 30 30 H 1.48500 * 109.47454 * 210.00115 * 27 25 23 31 31 H 1.09001 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47152 * 299.99712 * 1 2 3 33 33 H 1.09003 * 109.47339 * 60.00061 * 1 2 3 34 34 H 1.09001 * 109.47152 * 240.00288 * 2 1 3 35 35 H 1.09003 * 109.47339 * 119.99939 * 2 1 3 36 36 H 1.08997 * 109.58736 * 54.80506 * 5 3 2 37 37 H 1.08991 * 109.70583 * 294.43997 * 5 3 2 38 38 H 1.08993 * 110.72724 * 56.59439 * 9 7 6 39 39 H 1.08997 * 110.30513 * 334.35585 * 10 9 7 40 40 H 1.09008 * 110.30070 * 96.50184 * 10 9 7 41 41 H 1.07997 * 119.89185 * 0.02562 * 12 11 10 42 42 H 1.07995 * 120.03094 * 180.02562 * 13 12 11 43 43 H 1.07996 * 120.03582 * 179.97438 * 14 13 12 44 44 H 1.07994 * 119.89260 * 180.02562 * 15 14 13 45 45 H 1.08995 * 110.30777 * 223.88961 * 17 16 11 46 46 H 1.09007 * 110.39202 * 101.77427 * 17 16 11 47 47 H 1.08994 * 109.58595 * 293.82578 * 18 6 5 48 48 H 1.08998 * 109.58326 * 173.39533 * 18 6 5 49 49 H 1.08998 * 109.49988 * 185.41053 * 19 18 6 50 50 H 1.08998 * 109.50105 * 65.31372 * 19 18 6 51 51 H 0.97009 * 119.99477 * 265.00246 * 22 20 19 52 52 H 0.97006 * 119.99732 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4644 1.3506 7 6 1.4857 4.5566 1.5671 8 8 0.2896 4.4406 1.7316 9 6 2.1225 5.9218 1.6049 10 6 3.0502 6.0607 2.8307 11 6 2.9047 7.4999 3.2765 12 6 3.7076 8.2692 4.1022 13 6 3.3711 9.5809 4.3731 14 6 2.2289 10.1287 3.8191 15 6 1.4270 9.3631 2.9955 16 6 1.7633 8.0478 2.7220 17 6 1.0640 7.0144 1.8651 18 6 3.6953 3.5888 1.1498 19 6 4.0737 2.8882 -0.1589 20 6 3.5652 1.4451 -0.1258 21 1 4.0006 0.9262 0.7282 22 7 3.9542 0.7621 -1.3620 23 6 5.1918 0.1851 -1.4653 24 1 5.8810 0.2333 -0.6352 25 6 5.5604 -0.4616 -2.6369 26 7 6.7498 -1.0166 -2.7360 27 14 4.3681 -0.5456 -4.0724 28 1 4.5696 0.6332 -4.9530 29 1 2.9746 -0.5474 -3.5591 30 1 4.6121 -1.7891 -4.8466 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9965 1.5378 2.1548 37 1 0.5534 2.2160 1.3611 38 1 2.6647 6.1203 0.6805 39 1 2.7320 5.3848 3.6244 40 1 4.0828 5.8547 2.5488 41 1 4.5998 7.8420 4.5356 42 1 3.9995 10.1782 5.0170 43 1 1.9639 11.1541 4.0302 44 1 0.5352 9.7918 2.5629 45 1 0.7403 7.4595 0.9243 46 1 0.2106 6.5942 2.3974 47 1 4.2209 3.1190 1.9810 48 1 3.9669 4.6428 1.0918 49 1 5.1577 2.8895 -0.2720 50 1 3.6192 3.4148 -0.9981 51 1 3.3350 0.7186 -2.1075 52 1 7.0076 -1.4682 -3.5549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037928725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:55 Heat of formation + Delta-G solvation = -23.724943 kcal Electronic energy + Delta-G solvation = -30328.380940 eV Core-core repulsion = 26484.387332 eV Total energy + Delta-G solvation = -3843.993608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88970 -40.58482 -39.18532 -36.48365 -36.27518 -35.28987 -33.60807 -32.32510 -31.51156 -30.89011 -29.65648 -28.23453 -26.83602 -25.27474 -24.61438 -23.63749 -22.30234 -22.04506 -21.83390 -21.21970 -20.04085 -19.42986 -18.37911 -17.30767 -17.01714 -16.93348 -16.66933 -16.05205 -15.96759 -15.66975 -15.39499 -15.21971 -14.75551 -14.69522 -14.59283 -14.30585 -14.17195 -14.03457 -13.98676 -13.83754 -13.68554 -13.24156 -13.17120 -13.05800 -12.89180 -12.67070 -12.56568 -12.22918 -12.16167 -12.12591 -12.07537 -12.01271 -11.84503 -11.66393 -11.61091 -11.56312 -11.12786 -10.95424 -10.75665 -9.69963 -9.67917 -9.41538 -9.25480 -7.99215 -5.30667 0.44859 0.49789 1.38299 1.39233 1.46709 1.54842 1.95682 2.49601 2.85725 3.26352 3.32939 3.37085 3.54225 3.69121 3.78985 3.97369 3.98587 4.03622 4.10747 4.19232 4.21646 4.27755 4.31987 4.32376 4.43001 4.45604 4.60804 4.62724 4.68163 4.70218 4.73327 4.79439 4.80436 4.83762 4.88548 4.92375 5.00336 5.02254 5.07662 5.15762 5.19470 5.24794 5.26448 5.34639 5.45246 5.50474 5.56604 5.64254 5.64564 5.73231 5.81620 6.13441 6.25101 6.39450 7.11053 7.11282 7.88434 8.06352 9.22291 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.002576 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.662975 B =10866.035095 C =11860.221062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.061 0.939 5 C 0.124 3.876 6 N -0.603 5.603 7 C 0.525 3.475 8 O -0.579 6.579 9 C -0.105 4.105 10 C -0.065 4.065 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.127 4.127 14 C -0.125 4.125 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.065 4.065 18 C 0.112 3.888 19 C -0.145 4.145 20 C 0.182 3.818 21 H 0.049 0.951 22 N -0.748 5.748 23 C -0.215 4.215 24 H 0.063 0.937 25 C -0.063 4.063 26 N -0.984 5.984 27 Si 0.945 3.055 28 H -0.283 1.283 29 H -0.254 1.254 30 H -0.301 1.301 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.130 0.870 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.066 0.934 50 H 0.055 0.945 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 20.397 14.498 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.116 4.116 4 H 0.079 0.921 5 C 0.001 3.999 6 N -0.334 5.334 7 C 0.314 3.686 8 O -0.459 6.459 9 C -0.126 4.126 10 C -0.103 4.103 11 C -0.110 4.110 12 C -0.132 4.132 13 C -0.144 4.144 14 C -0.143 4.143 15 C -0.138 4.138 16 C -0.110 4.110 17 C -0.103 4.103 18 C -0.011 4.011 19 C -0.186 4.186 20 C 0.074 3.926 21 H 0.067 0.933 22 N -0.390 5.390 23 C -0.346 4.346 24 H 0.081 0.919 25 C -0.254 4.254 26 N -0.635 5.635 27 Si 0.774 3.226 28 H -0.210 1.210 29 H -0.179 1.179 30 H -0.228 1.228 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.155 0.845 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.148 0.852 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.127 0.873 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.195 0.805 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.232 20.241 14.654 27.397 hybrid contribution -0.205 -0.628 -1.450 1.594 sum -11.436 19.613 13.204 26.264 Atomic orbital electron populations 1.21791 0.94768 1.01999 1.01876 1.21423 0.96189 0.95234 1.02198 1.21683 0.95419 0.96619 0.97876 0.92051 1.21633 0.99433 0.81986 0.96800 1.48181 1.09002 1.06381 1.69833 1.20706 0.86289 0.86570 0.75043 1.90653 1.16414 1.86956 1.51889 1.21961 0.98010 0.90839 1.01831 1.21044 1.00642 0.92957 0.95612 1.20665 0.95972 0.95955 0.98438 1.20913 0.99963 0.94306 0.98024 1.21387 0.97584 0.95203 1.00265 1.21370 0.95020 1.00750 0.97135 1.20883 1.00720 0.92827 0.99375 1.20697 0.96439 0.94766 0.99079 1.20861 0.97272 0.92445 0.99677 1.22010 0.78710 1.02869 0.97512 1.22473 1.01501 0.97289 0.97349 1.20404 0.92487 0.91434 0.88283 0.93327 1.42800 1.14888 1.66518 1.14763 1.18998 0.91268 1.25384 0.98934 0.91942 1.25368 0.98133 1.01216 1.00712 1.69865 1.21679 1.43801 1.28171 0.85557 0.80141 0.76682 0.80259 1.20958 1.17922 1.22766 0.92089 0.91846 0.93269 0.93176 0.91628 0.90283 0.89374 0.85989 0.90143 0.87647 0.84526 0.83677 0.83782 0.85163 0.89838 0.90209 0.89633 0.87272 0.91518 0.92648 0.80538 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.68 71.98 0.70 -2.81 16 2 C -0.11 -3.22 5.31 30.59 0.16 -3.06 16 3 C -0.10 -2.75 1.92 -10.71 -0.02 -2.78 16 4 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.12 3.10 5.33 86.36 0.46 3.56 16 6 N -0.60 -14.05 2.97 -818.91 -2.43 -16.49 16 7 C 0.52 12.91 6.97 87.66 0.61 13.52 16 8 O -0.58 -18.23 14.92 -3.06 -0.05 -18.28 16 9 C -0.11 -1.98 2.45 -10.63 -0.03 -2.00 16 10 C -0.07 -1.05 5.39 30.52 0.16 -0.88 16 11 C -0.11 -1.95 6.14 -19.60 -0.12 -2.08 16 12 C -0.11 -1.74 10.04 22.30 0.22 -1.52 16 13 C -0.13 -1.71 10.05 22.24 0.22 -1.49 16 14 C -0.12 -1.73 10.05 22.24 0.22 -1.51 16 15 C -0.12 -1.99 10.04 22.30 0.22 -1.76 16 16 C -0.11 -2.08 6.14 -19.60 -0.12 -2.20 16 17 C -0.07 -1.30 6.11 30.51 0.19 -1.11 16 18 C 0.11 2.30 5.78 86.36 0.50 2.80 16 19 C -0.15 -4.20 5.66 30.67 0.17 -4.02 16 20 C 0.18 6.16 2.19 45.02 0.10 6.26 16 21 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 22 N -0.75 -32.55 4.13 -322.81 -1.33 -33.88 16 23 C -0.21 -11.55 10.41 84.03 0.87 -10.68 16 24 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 25 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 26 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 27 Si 0.94 45.01 27.73 68.60 1.90 46.91 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.25 -11.01 6.52 99.48 0.65 -10.36 16 30 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.38 6.70 -2.39 -0.02 1.36 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.72 7.22 -2.39 -0.02 1.70 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 2.33 5.73 -2.39 -0.01 2.32 16 38 H 0.12 1.97 7.55 -2.39 -0.02 1.95 16 39 H 0.08 1.38 7.89 -2.39 -0.02 1.36 16 40 H 0.11 1.27 6.88 -2.38 -0.02 1.25 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.90 6.98 -2.38 -0.02 1.88 16 47 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.11 1.70 4.57 -2.39 -0.01 1.69 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.36 15.67 5.38 -92.70 -0.50 15.18 16 52 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -69.66 398.46 3.75 -65.92 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.35 Total: 32.23 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.00 Total: -14.90 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.47 Total: -111.89 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -69.66 3.75 -65.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.191 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds