Wall clock time and date at job start Wed Apr 1 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47352 * 2 1 4 4 H 1.09006 * 109.51980 * 54.92325 * 3 2 1 5 5 C 1.53185 * 109.50121 * 294.84307 * 3 2 1 6 6 N 1.46927 * 108.77689 * 185.41079 * 5 3 2 7 7 C 1.34779 * 120.63224 * 233.62830 * 6 5 3 8 8 O 1.21282 * 119.99663 * 175.47665 * 7 6 5 9 9 C 1.50701 * 119.99696 * 355.47825 * 7 6 5 10 10 C 1.54345 * 110.82035 * 272.98049 * 9 7 6 11 11 C 1.51676 * 105.01941 * 215.57463 * 10 9 7 12 12 C 1.38495 * 130.30682 * 197.08592 * 11 10 9 13 13 C 1.38107 * 120.21493 * 179.84452 * 12 11 10 14 14 C 1.38253 * 119.93396 * 359.97438 * 13 12 11 15 15 C 1.38110 * 119.93517 * 359.97438 * 14 13 12 16 16 C 1.38221 * 109.84186 * 16.92067 * 11 10 9 17 17 C 1.51371 * 109.75587 * 0.15841 * 16 11 10 18 18 C 1.46927 * 118.73528 * 53.61053 * 6 5 3 19 19 C 1.53190 * 108.77329 * 306.38824 * 18 6 5 20 20 C 1.53036 * 109.31360 * 54.63815 * 19 18 6 21 21 H 1.09001 * 109.45995 * 58.64280 * 20 19 18 22 22 N 1.46502 * 109.46347 * 178.60742 * 20 19 18 23 23 C 1.36925 * 120.00521 * 275.00479 * 22 20 19 24 24 H 1.08004 * 120.00196 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00139 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99977 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00142 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47278 * 270.00230 * 27 25 23 29 29 H 1.48505 * 109.46893 * 30.00393 * 27 25 23 30 30 H 1.48500 * 109.47249 * 150.00104 * 27 25 23 31 31 H 1.09004 * 109.46499 * 300.00020 * 1 2 3 32 32 H 1.09000 * 109.47179 * 59.99172 * 1 2 3 33 33 H 1.08993 * 109.47362 * 179.97438 * 1 2 3 34 34 H 1.09010 * 109.46678 * 240.00667 * 2 1 3 35 35 H 1.08990 * 109.47151 * 120.00612 * 2 1 3 36 36 H 1.09007 * 109.58946 * 65.62604 * 5 3 2 37 37 H 1.09004 * 109.58621 * 305.20197 * 5 3 2 38 38 H 1.08997 * 110.73112 * 36.39287 * 9 7 6 39 39 H 1.09003 * 110.30595 * 334.35684 * 10 9 7 40 40 H 1.08999 * 110.30264 * 96.51118 * 10 9 7 41 41 H 1.08003 * 119.89845 * 359.82498 * 12 11 10 42 42 H 1.07997 * 120.03582 * 179.97438 * 13 12 11 43 43 H 1.08003 * 120.03556 * 180.02562 * 14 13 12 44 44 H 1.07997 * 119.88944 * 180.02562 * 15 14 13 45 45 H 1.09001 * 110.30264 * 223.89407 * 17 16 11 46 46 H 1.08995 * 110.38474 * 101.78268 * 17 16 11 47 47 H 1.08999 * 109.58302 * 186.60587 * 18 6 5 48 48 H 1.08995 * 109.70889 * 66.24816 * 18 6 5 49 49 H 1.09000 * 109.49908 * 294.68198 * 19 18 6 50 50 H 1.09003 * 109.49631 * 174.59229 * 19 18 6 51 51 H 0.97005 * 119.99097 * 94.99478 * 22 20 19 52 52 H 0.97003 * 120.00014 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9827 0.8408 5 6 1.6386 2.1268 -1.3103 6 7 2.2452 3.4645 -1.3505 7 6 1.4858 4.5567 -1.5670 8 8 1.9839 5.6613 -1.5164 9 6 0.0177 4.4052 -1.8718 10 6 -0.2106 4.2049 -3.3851 11 6 -1.5094 4.9281 -3.6858 12 6 -2.3577 4.8302 -4.7762 13 6 -3.5051 5.5966 -4.8351 14 6 -3.8090 6.4642 -3.8026 15 6 -2.9648 6.5625 -2.7139 16 6 -1.8132 5.7957 -2.6535 17 6 -0.7397 5.7201 -1.5890 18 6 3.6954 3.5887 -1.1497 19 6 4.0738 2.8880 0.1589 20 6 3.5653 1.4450 0.1257 21 1 4.0007 0.9261 -0.7283 22 7 3.9543 0.7618 1.3619 23 6 5.1918 0.1848 1.4651 24 1 5.8813 0.2337 0.6353 25 6 5.5605 -0.4620 2.6366 26 7 4.7204 -0.5212 3.6481 27 14 7.2485 -1.2498 2.7771 28 1 7.1772 -2.6591 2.3147 29 1 8.2159 -0.5009 1.9353 30 1 7.6945 -1.2155 4.1932 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 0.5533 2.2163 -1.3584 37 1 1.9965 1.5378 -2.1548 38 1 -0.4115 3.5807 -1.3026 39 1 0.6080 4.6472 -3.9529 40 1 -0.3023 3.1437 -3.6165 41 1 -2.1211 4.1525 -5.5832 42 1 -4.1643 5.5182 -5.6870 43 1 -4.7061 7.0640 -3.8468 44 1 -3.2032 7.2403 -1.9076 45 1 -1.1917 5.6904 -0.5975 46 1 -0.0637 6.5711 -1.6705 47 1 3.9672 4.6427 -1.0916 48 1 4.2230 3.1206 -1.9807 49 1 3.6195 3.4147 0.9982 50 1 5.1579 2.8893 0.2720 51 1 3.3352 0.7183 2.1074 52 1 4.9780 -0.9736 4.4667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:59 Heat of formation + Delta-G solvation = -10.746979 kcal Electronic energy + Delta-G solvation = -30330.777530 eV Core-core repulsion = 26487.346689 eV Total energy + Delta-G solvation = -3843.430841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91150 -39.64437 -37.92588 -35.63031 -34.63229 -33.75507 -31.99394 -31.64669 -30.15209 -29.02314 -28.62080 -27.53207 -25.22055 -24.31457 -23.50565 -22.44444 -21.47402 -21.18599 -20.56961 -19.83278 -18.80238 -17.60980 -17.05260 -16.52849 -15.99456 -15.84292 -15.24639 -14.93330 -14.70701 -14.58941 -14.03817 -13.89227 -13.57838 -13.54067 -13.38640 -13.31730 -13.13660 -13.07074 -12.76567 -12.71310 -12.52952 -12.11115 -11.98146 -11.57868 -11.46309 -11.43342 -11.31445 -11.25808 -11.03099 -10.92569 -10.85355 -10.71051 -10.40792 -10.25684 -10.20726 -9.85278 -9.71934 -9.52022 -9.04839 -8.91524 -8.73232 -8.48897 -6.98315 -5.79652 -3.08213 1.10949 1.14851 2.59417 3.03858 3.41052 3.46827 3.48161 3.51597 4.11133 4.19853 4.53389 4.58059 4.71527 4.73628 4.80527 4.82445 4.98465 5.06649 5.10891 5.21811 5.26643 5.34641 5.42207 5.46649 5.48290 5.50818 5.52618 5.57424 5.60346 5.62065 5.65977 5.79785 5.82660 5.87744 5.96799 5.99177 6.03299 6.07640 6.19034 6.24384 6.26110 6.33388 6.35531 6.41453 6.44702 6.51102 6.66514 6.75497 6.82108 6.90828 7.04343 7.49477 7.67178 8.20814 8.38588 9.50184 10.07142 10.41983 11.42752 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.002347 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.664716 B =11925.031722 C =12463.421120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.111 3.889 6 N -0.602 5.602 7 C 0.524 3.476 8 O -0.545 6.545 9 C -0.113 4.113 10 C -0.065 4.065 11 C -0.096 4.096 12 C -0.105 4.105 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.088 4.088 17 C -0.072 4.072 18 C 0.111 3.889 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.282 1.282 30 H -0.292 1.292 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 9.554 -16.065 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.126 4.126 4 H 0.089 0.911 5 C -0.012 4.012 6 N -0.334 5.334 7 C 0.311 3.689 8 O -0.423 6.423 9 C -0.134 4.134 10 C -0.102 4.102 11 C -0.096 4.096 12 C -0.123 4.123 13 C -0.142 4.142 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.088 4.088 17 C -0.109 4.109 18 C -0.011 4.011 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.208 1.208 30 H -0.219 1.219 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.103 0.897 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.378 10.048 -16.036 25.027 hybrid contribution 0.736 -0.559 0.474 1.039 sum -15.642 9.488 -15.562 24.018 Atomic orbital electron populations 1.21853 0.96888 1.01256 1.01013 1.21472 0.94233 0.95722 1.03706 1.21795 0.98112 0.96221 0.96457 0.91081 1.21985 0.98111 0.82400 0.98710 1.48148 1.08652 1.06647 1.69988 1.20215 0.88148 0.84106 0.76392 1.90663 1.74202 1.25237 1.52175 1.22022 0.93123 1.00306 0.97924 1.20958 0.94813 1.00761 0.93691 1.20567 0.96074 0.98037 0.94920 1.20616 0.94337 0.99931 0.97445 1.21023 0.97209 0.96976 0.98953 1.21040 0.99567 0.99150 0.94067 1.20631 0.93837 0.99452 0.98662 1.20587 0.95214 0.96457 0.96566 1.21007 0.94857 0.97717 0.97294 1.21716 0.78832 1.02139 0.98451 1.22667 1.02186 0.98872 0.95397 1.20180 0.90539 0.90705 0.91218 0.93439 1.42399 1.16531 1.64444 1.12678 1.19204 0.91838 1.27219 0.98591 0.91252 1.24725 0.98144 1.01591 0.96415 1.69656 1.35266 1.48376 1.04728 0.86228 0.84064 0.79296 0.76818 1.21778 1.20810 1.21850 0.92927 0.93471 0.93030 0.92351 0.89648 0.89868 0.91210 0.87679 0.89673 0.89806 0.86198 0.85956 0.85951 0.86156 0.90231 0.88003 0.89697 0.91814 0.92272 0.90673 0.78231 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.68 37.16 0.36 -1.41 16 2 C -0.11 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C -0.11 -1.56 1.92 -90.50 -0.17 -1.73 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.11 1.31 5.21 -3.71 -0.02 1.29 16 6 N -0.60 -8.11 2.97 -172.77 -0.51 -8.62 16 7 C 0.52 7.23 6.82 -10.98 -0.07 7.15 16 8 O -0.54 -9.33 15.01 5.56 0.08 -9.24 16 9 C -0.11 -1.20 2.63 -90.36 -0.24 -1.44 16 10 C -0.06 -0.61 6.34 -26.70 -0.17 -0.78 16 11 C -0.10 -0.96 6.15 -104.05 -0.64 -1.60 16 12 C -0.11 -0.92 10.04 -39.53 -0.40 -1.32 16 13 C -0.12 -0.99 10.05 -39.62 -0.40 -1.39 16 14 C -0.12 -0.98 10.05 -39.62 -0.40 -1.38 16 15 C -0.11 -0.99 10.04 -39.53 -0.40 -1.39 16 16 C -0.09 -0.91 6.14 -104.21 -0.64 -1.55 16 17 C -0.07 -0.77 6.24 -26.84 -0.17 -0.94 16 18 C 0.11 1.64 6.44 -3.71 -0.02 1.61 16 19 C -0.15 -2.61 5.66 -26.61 -0.15 -2.76 16 20 C 0.18 3.36 2.19 -67.89 -0.15 3.21 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.86 4.33 -53.39 -0.23 -17.09 16 23 C -0.24 -6.28 9.93 -15.07 -0.15 -6.43 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 27 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.45 6.70 -51.93 -0.35 0.10 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.08 1.54 7.22 -51.93 -0.37 1.17 16 36 H 0.08 0.81 4.14 -51.93 -0.22 0.59 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.11 0.99 6.21 -51.93 -0.32 0.67 16 39 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.27 6.87 -51.93 -0.36 0.91 16 47 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 51 H 0.38 9.69 7.51 -40.82 -0.31 9.38 16 52 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 403.97 15.07 6.09 6.09 Total: -1.00 -30.84 403.97 -11.52 -42.36 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.58 Total: 9.30 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -4.06 Total: -13.07 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.02 Total: -52.36 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.84 -11.52 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.614 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds