Wall clock time and date at job start Wed Apr 1 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47352 * 2 1 4 4 H 1.09006 * 109.51980 * 54.92325 * 3 2 1 5 5 C 1.53185 * 109.50121 * 294.84307 * 3 2 1 6 6 N 1.46927 * 108.77689 * 185.41079 * 5 3 2 7 7 C 1.34779 * 120.63224 * 233.62830 * 6 5 3 8 8 O 1.21282 * 119.99663 * 175.47665 * 7 6 5 9 9 C 1.50701 * 119.99696 * 355.47825 * 7 6 5 10 10 C 1.54345 * 110.82035 * 272.98049 * 9 7 6 11 11 C 1.51676 * 105.01941 * 215.57463 * 10 9 7 12 12 C 1.38495 * 130.30682 * 197.08592 * 11 10 9 13 13 C 1.38107 * 120.21493 * 179.84452 * 12 11 10 14 14 C 1.38253 * 119.93396 * 359.97438 * 13 12 11 15 15 C 1.38110 * 119.93517 * 359.97438 * 14 13 12 16 16 C 1.38221 * 109.84186 * 16.92067 * 11 10 9 17 17 C 1.51371 * 109.75587 * 0.15841 * 16 11 10 18 18 C 1.46927 * 118.73528 * 53.61053 * 6 5 3 19 19 C 1.53190 * 108.77329 * 306.38824 * 18 6 5 20 20 C 1.53036 * 109.31360 * 54.63815 * 19 18 6 21 21 H 1.09001 * 109.45995 * 58.64280 * 20 19 18 22 22 N 1.46502 * 109.46347 * 178.60742 * 20 19 18 23 23 C 1.36925 * 120.00521 * 275.00479 * 22 20 19 24 24 H 1.08004 * 120.00196 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00139 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99977 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00142 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47278 * 270.00230 * 27 25 23 29 29 H 1.48505 * 109.46893 * 30.00393 * 27 25 23 30 30 H 1.48500 * 109.47249 * 150.00104 * 27 25 23 31 31 H 1.09004 * 109.46499 * 300.00020 * 1 2 3 32 32 H 1.09000 * 109.47179 * 59.99172 * 1 2 3 33 33 H 1.08993 * 109.47362 * 179.97438 * 1 2 3 34 34 H 1.09010 * 109.46678 * 240.00667 * 2 1 3 35 35 H 1.08990 * 109.47151 * 120.00612 * 2 1 3 36 36 H 1.09007 * 109.58946 * 65.62604 * 5 3 2 37 37 H 1.09004 * 109.58621 * 305.20197 * 5 3 2 38 38 H 1.08997 * 110.73112 * 36.39287 * 9 7 6 39 39 H 1.09003 * 110.30595 * 334.35684 * 10 9 7 40 40 H 1.08999 * 110.30264 * 96.51118 * 10 9 7 41 41 H 1.08003 * 119.89845 * 359.82498 * 12 11 10 42 42 H 1.07997 * 120.03582 * 179.97438 * 13 12 11 43 43 H 1.08003 * 120.03556 * 180.02562 * 14 13 12 44 44 H 1.07997 * 119.88944 * 180.02562 * 15 14 13 45 45 H 1.09001 * 110.30264 * 223.89407 * 17 16 11 46 46 H 1.08995 * 110.38474 * 101.78268 * 17 16 11 47 47 H 1.08999 * 109.58302 * 186.60587 * 18 6 5 48 48 H 1.08995 * 109.70889 * 66.24816 * 18 6 5 49 49 H 1.09000 * 109.49908 * 294.68198 * 19 18 6 50 50 H 1.09003 * 109.49631 * 174.59229 * 19 18 6 51 51 H 0.97005 * 119.99097 * 94.99478 * 22 20 19 52 52 H 0.97003 * 120.00014 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9827 0.8408 5 6 1.6386 2.1268 -1.3103 6 7 2.2452 3.4645 -1.3505 7 6 1.4858 4.5567 -1.5670 8 8 1.9839 5.6613 -1.5164 9 6 0.0177 4.4052 -1.8718 10 6 -0.2106 4.2049 -3.3851 11 6 -1.5094 4.9281 -3.6858 12 6 -2.3577 4.8302 -4.7762 13 6 -3.5051 5.5966 -4.8351 14 6 -3.8090 6.4642 -3.8026 15 6 -2.9648 6.5625 -2.7139 16 6 -1.8132 5.7957 -2.6535 17 6 -0.7397 5.7201 -1.5890 18 6 3.6954 3.5887 -1.1497 19 6 4.0738 2.8880 0.1589 20 6 3.5653 1.4450 0.1257 21 1 4.0007 0.9261 -0.7283 22 7 3.9543 0.7618 1.3619 23 6 5.1918 0.1848 1.4651 24 1 5.8813 0.2337 0.6353 25 6 5.5605 -0.4620 2.6366 26 7 4.7204 -0.5212 3.6481 27 14 7.2485 -1.2498 2.7771 28 1 7.1772 -2.6591 2.3147 29 1 8.2159 -0.5009 1.9353 30 1 7.6945 -1.2155 4.1932 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 0.5533 2.2163 -1.3584 37 1 1.9965 1.5378 -2.1548 38 1 -0.4115 3.5807 -1.3026 39 1 0.6080 4.6472 -3.9529 40 1 -0.3023 3.1437 -3.6165 41 1 -2.1211 4.1525 -5.5832 42 1 -4.1643 5.5182 -5.6870 43 1 -4.7061 7.0640 -3.8468 44 1 -3.2032 7.2403 -1.9076 45 1 -1.1917 5.6904 -0.5975 46 1 -0.0637 6.5711 -1.6705 47 1 3.9672 4.6427 -1.0916 48 1 4.2230 3.1206 -1.9807 49 1 3.6195 3.4147 0.9982 50 1 5.1579 2.8893 0.2720 51 1 3.3352 0.7183 2.1074 52 1 4.9780 -0.9736 4.4667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037928729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:58 Heat of formation + Delta-G solvation = -26.073238 kcal Electronic energy + Delta-G solvation = -30331.442127 eV Core-core repulsion = 26487.346689 eV Total energy + Delta-G solvation = -3844.095438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85375 -40.56110 -39.16021 -36.41117 -36.17993 -35.08101 -33.64824 -32.31199 -31.56342 -30.01953 -29.85359 -28.24737 -26.71792 -25.38898 -24.92263 -23.64082 -22.38123 -21.86290 -21.69918 -21.12560 -19.96315 -19.04564 -18.55816 -17.28679 -16.96822 -16.76668 -16.63781 -16.03358 -15.73385 -15.61005 -15.53875 -15.47190 -14.71716 -14.59376 -14.52008 -14.25399 -14.15627 -13.89751 -13.84596 -13.68585 -13.59959 -13.27797 -13.09957 -12.97939 -12.84647 -12.66692 -12.48755 -12.19995 -12.16997 -12.12699 -12.07476 -11.98216 -11.82729 -11.65423 -11.53049 -11.45723 -11.18948 -10.85988 -10.70318 -9.68801 -9.67003 -9.40600 -8.96073 -7.91720 -5.18685 0.46046 0.51013 1.47519 1.48197 1.52371 1.56218 1.95868 2.57175 2.87304 3.28561 3.40178 3.41758 3.69403 3.73722 3.83668 4.00342 4.05199 4.08601 4.11509 4.20414 4.21633 4.31440 4.32192 4.38550 4.47506 4.51810 4.64245 4.67115 4.68935 4.73495 4.75595 4.80940 4.84259 4.87558 4.89524 4.96760 4.98572 5.07102 5.14678 5.17351 5.19581 5.25824 5.36447 5.43194 5.51968 5.52866 5.57701 5.60084 5.65316 5.69469 5.74752 6.14483 6.30128 6.40860 7.11584 7.36834 8.13596 8.36245 9.31590 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.002347 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.664716 B =11925.031722 C =12463.421120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.096 4.096 4 H 0.056 0.944 5 C 0.117 3.883 6 N -0.602 5.602 7 C 0.523 3.477 8 O -0.583 6.583 9 C -0.106 4.106 10 C -0.059 4.059 11 C -0.109 4.109 12 C -0.112 4.112 13 C -0.126 4.126 14 C -0.125 4.125 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.071 4.071 18 C 0.120 3.880 19 C -0.139 4.139 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.730 5.730 23 C -0.230 4.230 24 H 0.075 0.925 25 C -0.076 4.076 26 N -0.969 5.969 27 Si 0.966 3.034 28 H -0.287 1.287 29 H -0.272 1.272 30 H -0.301 1.301 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.037 0.963 50 H 0.057 0.943 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 9.185 -18.974 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.116 4.116 4 H 0.075 0.925 5 C -0.006 4.006 6 N -0.333 5.333 7 C 0.312 3.688 8 O -0.464 6.464 9 C -0.127 4.127 10 C -0.096 4.096 11 C -0.109 4.109 12 C -0.130 4.130 13 C -0.144 4.144 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.003 4.003 19 C -0.180 4.180 20 C 0.071 3.929 21 H 0.067 0.933 22 N -0.369 5.369 23 C -0.362 4.362 24 H 0.093 0.907 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.796 3.204 28 H -0.215 1.215 29 H -0.197 1.197 30 H -0.228 1.228 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.147 0.853 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.253 9.686 -19.000 28.071 hybrid contribution 1.277 -0.357 1.326 1.875 sum -16.977 9.329 -17.674 26.222 Atomic orbital electron populations 1.21808 0.94185 1.02120 1.02289 1.21360 0.96566 0.94734 1.01914 1.21668 0.95079 0.96939 0.97939 0.92539 1.22098 0.99901 0.81257 0.97298 1.48196 1.08019 1.07450 1.69664 1.20781 0.89330 0.83356 0.75337 1.90651 1.75174 1.26766 1.53799 1.22026 0.90433 1.00835 0.99379 1.20941 0.94310 1.02209 0.92175 1.20707 0.96491 0.98315 0.95356 1.20907 0.94279 1.00313 0.97521 1.21392 0.97238 0.96209 0.99522 1.21367 1.00037 0.99241 0.93609 1.20875 0.93851 0.99590 0.99555 1.20641 0.95716 0.97657 0.96832 1.20936 0.94799 0.96994 0.98091 1.21520 0.80244 1.01247 0.97292 1.22466 1.00785 0.98385 0.96398 1.20423 0.93316 0.90257 0.88938 0.93282 1.42576 1.15476 1.64774 1.14048 1.19568 0.92748 1.25596 0.98263 0.90724 1.25465 1.01511 1.03318 0.96563 1.69811 1.36996 1.50100 1.05117 0.85246 0.80482 0.78487 0.76203 1.21468 1.19653 1.22753 0.93414 0.90360 0.92483 0.91501 0.94073 0.86778 0.88991 0.85724 0.90723 0.87270 0.84326 0.83555 0.83805 0.85325 0.89731 0.90460 0.90709 0.89856 0.94400 0.92472 0.79691 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.68 71.98 0.70 -2.30 16 2 C -0.11 -2.97 5.31 30.60 0.16 -2.81 16 3 C -0.10 -2.73 1.92 -10.72 -0.02 -2.75 16 4 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 5 C 0.12 2.38 5.21 86.36 0.45 2.83 16 6 N -0.60 -15.16 2.97 -818.90 -2.43 -17.59 16 7 C 0.52 13.81 6.82 87.66 0.60 14.41 16 8 O -0.58 -20.11 15.01 -3.03 -0.05 -20.16 16 9 C -0.11 -2.03 2.63 -10.62 -0.03 -2.06 16 10 C -0.06 -0.95 6.34 30.62 0.19 -0.76 16 11 C -0.11 -1.91 6.15 -19.50 -0.12 -2.03 16 12 C -0.11 -1.64 10.04 22.30 0.22 -1.41 16 13 C -0.13 -1.63 10.05 22.24 0.22 -1.41 16 14 C -0.12 -1.72 10.05 22.24 0.22 -1.50 16 15 C -0.12 -2.04 10.04 22.30 0.22 -1.82 16 16 C -0.11 -2.10 6.14 -19.59 -0.12 -2.22 16 17 C -0.07 -1.48 6.24 30.52 0.19 -1.29 16 18 C 0.12 3.45 6.44 86.36 0.56 4.01 16 19 C -0.14 -4.91 5.66 30.67 0.17 -4.74 16 20 C 0.18 6.53 2.19 45.02 0.10 6.62 16 21 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 22 N -0.73 -35.04 4.33 -322.83 -1.40 -36.44 16 23 C -0.23 -12.32 9.93 84.04 0.83 -11.48 16 24 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 25 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 26 N -0.97 -58.69 13.06 21.65 0.28 -58.41 16 27 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 28 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 29 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 30 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 32 H 0.08 1.12 6.70 -2.39 -0.02 1.11 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.04 1.51 7.22 -2.39 -0.02 1.49 16 36 H 0.11 1.68 4.14 -2.38 -0.01 1.67 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.12 1.89 6.21 -2.39 -0.01 1.88 16 39 H 0.07 1.38 7.89 -2.39 -0.02 1.36 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 1.99 6.87 -2.39 -0.02 1.97 16 47 H 0.07 2.34 7.00 -2.39 -0.02 2.32 16 48 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.37 19.54 7.51 -92.70 -0.70 18.84 16 52 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -69.71 403.97 3.67 -66.03 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.21 Total: 33.28 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.03 Total: -14.57 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -3.55 Total: -112.44 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.71 3.67 -66.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.960 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds