Wall clock time and date at job start Wed Apr 1 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46617 * 2 1 4 4 H 1.09003 * 109.50115 * 304.93711 * 3 2 1 5 5 C 1.53185 * 109.49826 * 65.00545 * 3 2 1 6 6 N 1.46925 * 108.77766 * 174.58509 * 5 3 2 7 7 C 1.34783 * 120.63393 * 126.41108 * 6 5 3 8 8 O 1.21277 * 119.99976 * 354.79126 * 7 6 5 9 9 C 1.50699 * 119.99788 * 174.78839 * 7 6 5 10 10 C 1.52999 * 109.54099 * 67.12167 * 9 7 6 11 11 F 1.39905 * 109.47245 * 186.10404 * 10 9 7 12 12 C 1.53166 * 109.54789 * 306.85135 * 9 7 6 13 13 C 1.53092 * 109.16593 * 297.11217 * 12 9 7 14 14 O 1.42899 * 109.41559 * 302.39574 * 13 12 9 15 15 C 1.42902 * 114.09969 * 61.15328 * 14 13 12 16 16 C 1.53094 * 109.41460 * 298.84240 * 15 14 13 17 17 C 1.46933 * 118.73775 * 306.38970 * 6 5 3 18 18 C 1.53192 * 108.77302 * 53.60738 * 17 6 5 19 19 C 1.53031 * 109.31327 * 305.36463 * 18 17 6 20 20 H 1.08998 * 109.46522 * 301.34651 * 19 18 17 21 21 N 1.46504 * 109.46004 * 181.38722 * 19 18 17 22 22 C 1.36937 * 120.00102 * 84.93597 * 21 19 18 23 23 H 1.08001 * 119.99760 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00083 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00080 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99984 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47071 * 90.00009 * 26 24 22 28 28 H 1.48500 * 109.46981 * 210.00023 * 26 24 22 29 29 H 1.48500 * 109.46681 * 329.99809 * 26 24 22 30 30 H 1.09005 * 109.47144 * 299.99384 * 1 2 3 31 31 H 1.08992 * 109.47649 * 59.99983 * 1 2 3 32 32 H 1.09005 * 109.46780 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47649 * 120.00017 * 2 1 3 34 34 H 1.09005 * 109.47144 * 240.00616 * 2 1 3 35 35 H 1.08997 * 109.58476 * 294.37096 * 5 3 2 36 36 H 1.08997 * 109.59268 * 54.79575 * 5 3 2 37 37 H 1.09002 * 109.47608 * 306.10111 * 10 9 7 38 38 H 1.09002 * 109.47544 * 66.10471 * 10 9 7 39 39 H 1.08996 * 109.52319 * 57.01994 * 12 9 7 40 40 H 1.09004 * 109.52349 * 177.20990 * 12 9 7 41 41 H 1.08998 * 109.48406 * 182.40587 * 13 12 9 42 42 H 1.09007 * 109.48721 * 62.38082 * 13 12 9 43 43 H 1.09001 * 109.48156 * 178.86050 * 15 14 13 44 44 H 1.08998 * 109.49215 * 58.83057 * 15 14 13 45 45 H 1.08999 * 109.51954 * 297.70044 * 16 15 14 46 46 H 1.08995 * 109.57253 * 177.54535 * 16 15 14 47 47 H 1.08999 * 109.58443 * 173.39691 * 17 6 5 48 48 H 1.08997 * 109.58741 * 293.67832 * 17 6 5 49 49 H 1.09000 * 109.49675 * 65.31992 * 18 17 6 50 50 H 1.09000 * 109.49277 * 185.41266 * 18 17 6 51 51 H 0.96998 * 120.00022 * 264.93163 * 21 19 18 52 52 H 0.96996 * 119.99730 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6063 1.9817 -0.8423 5 6 1.6350 2.1279 1.3088 6 7 2.2413 3.4656 1.3494 7 6 1.4814 4.5579 1.5638 8 8 0.2750 4.4536 1.6313 9 6 2.1308 5.9088 1.7198 10 6 2.7656 6.3278 0.3922 11 9 3.4857 7.5136 0.5733 12 6 3.2090 5.8369 2.8053 13 6 2.5517 5.4931 4.1445 14 8 1.5596 6.4744 4.4526 15 6 0.5006 6.5536 3.4964 16 6 1.0756 6.9402 2.1312 17 6 3.6920 3.5900 1.1522 18 6 4.0739 2.8881 -0.1549 19 6 3.5655 1.4451 -0.1218 20 1 3.9988 0.9269 0.7336 21 7 3.9577 0.7610 -1.3564 22 6 5.1961 0.1851 -1.4564 23 1 5.8838 0.2357 -0.6252 24 6 5.5679 -0.4626 -2.6265 25 7 4.7300 -0.5238 -3.6397 26 14 7.2575 -1.2475 -2.7631 27 1 7.1878 -2.6563 -2.2990 28 1 7.7057 -1.2143 -4.1785 29 1 8.2220 -0.4958 -1.9206 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 0.5496 2.2173 1.3539 36 1 1.9907 1.5397 2.1546 37 1 3.4389 5.5429 0.0477 38 1 1.9836 6.4874 -0.3501 39 1 3.9348 5.0658 2.5472 40 1 3.7122 6.8007 2.8834 41 1 3.3085 5.4825 4.9289 42 1 2.0833 4.5110 4.0782 43 1 -0.2201 7.3072 3.8138 44 1 0.0052 5.5857 3.4213 45 1 1.5356 7.9262 2.1956 46 1 0.2763 6.9589 1.3904 47 1 3.9639 4.6439 1.0940 48 1 4.2155 3.1231 1.9865 49 1 3.6217 3.4140 -0.9957 50 1 5.1583 2.8894 -0.2651 51 1 3.3401 0.7159 -2.1031 52 1 4.9897 -0.9767 -4.4571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037936341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:00 Heat of formation + Delta-G solvation = -132.892707 kcal Electronic energy + Delta-G solvation = -33106.110858 eV Core-core repulsion = 28826.614156 eV Total energy + Delta-G solvation = -4279.496702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.79132 -42.29899 -40.03398 -38.76758 -36.59952 -35.78176 -34.91706 -33.47945 -32.14502 -31.14640 -30.15089 -29.03457 -26.91287 -25.46743 -25.07730 -24.46628 -23.97786 -22.58746 -22.09668 -21.05088 -19.89844 -19.04113 -18.01781 -17.69289 -17.47639 -17.15999 -16.83359 -16.64451 -16.50582 -16.33750 -15.74978 -15.63408 -15.43351 -15.24411 -14.88833 -14.80025 -14.74031 -14.52484 -14.36381 -13.97491 -13.68873 -13.58133 -13.28682 -13.05590 -12.96553 -12.84633 -12.72202 -12.59981 -12.55031 -12.37062 -12.21781 -12.13624 -12.02754 -11.83164 -11.61619 -11.52942 -11.46595 -11.36976 -11.09216 -10.93455 -10.62700 -10.44692 -9.71258 -8.94416 -7.89940 -5.17072 1.39025 1.49888 1.50248 1.58137 1.85491 2.58925 2.89605 3.11163 3.25751 3.33372 3.43561 3.66390 3.70243 3.79640 3.88354 3.92282 3.97622 4.02999 4.09582 4.20823 4.26419 4.32002 4.34216 4.39565 4.43627 4.45763 4.56504 4.63399 4.65917 4.72036 4.74387 4.77583 4.80423 4.82023 4.85768 4.98952 4.99679 5.02967 5.04980 5.11997 5.16848 5.29001 5.35814 5.45924 5.52339 5.58775 5.65073 6.19248 6.29738 6.32113 7.00353 7.38559 8.14939 8.37316 9.33520 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.003331 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.246877 B = 8403.091514 C = 9368.800830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.052 0.948 5 C 0.125 3.875 6 N -0.599 5.599 7 C 0.527 3.473 8 O -0.563 6.563 9 C -0.107 4.107 10 C 0.063 3.937 11 F -0.210 7.210 12 C -0.161 4.161 13 C 0.059 3.941 14 O -0.396 6.396 15 C 0.055 3.945 16 C -0.127 4.127 17 C 0.091 3.909 18 C -0.145 4.145 19 C 0.179 3.821 20 H 0.049 0.951 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.964 3.036 27 H -0.292 1.292 28 H -0.302 1.302 29 H -0.267 1.267 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.040 0.960 43 H 0.107 0.893 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.370 0.630 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 13.617 15.262 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.331 5.331 7 C 0.315 3.685 8 O -0.442 6.442 9 C -0.111 4.111 10 C 0.009 3.991 11 F -0.191 7.191 12 C -0.198 4.198 13 C -0.018 4.018 14 O -0.315 6.315 15 C -0.021 4.021 16 C -0.165 4.165 17 C -0.030 4.030 18 C -0.186 4.186 19 C 0.071 3.929 20 H 0.067 0.933 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.097 0.903 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.794 3.206 27 H -0.219 1.219 28 H -0.229 1.229 29 H -0.192 1.192 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.058 0.942 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.132 0.868 48 H 0.113 0.887 49 H 0.067 0.933 50 H 0.089 0.911 51 H 0.202 0.798 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.033 13.634 15.524 21.524 hybrid contribution 0.639 -0.925 -1.449 1.834 sum -5.394 12.709 14.075 19.716 Atomic orbital electron populations 1.21773 0.94997 1.01826 1.01667 1.21354 0.95946 0.95339 1.01920 1.21620 0.95855 0.96356 0.97372 0.92945 1.21674 0.99392 0.81652 0.96999 1.48163 1.08768 1.06449 1.69685 1.20426 0.86637 0.85798 0.75596 1.90649 1.15156 1.86344 1.52020 1.21462 0.98484 0.93126 0.97992 1.22307 0.96385 0.84499 0.95939 1.92771 1.79965 1.49806 1.96522 1.22724 0.97253 1.06018 0.93789 1.22676 0.91197 0.90678 0.97208 1.87893 1.35984 1.59225 1.48387 1.22728 0.89399 1.02250 0.87733 1.22022 0.97826 0.97990 0.98663 1.22545 0.79230 1.02971 0.98297 1.22534 1.01660 0.97838 0.96582 1.20413 0.92263 0.91249 0.89006 0.93282 1.42585 1.15465 1.64936 1.13952 1.19589 0.92594 1.25610 0.98241 0.90339 1.25437 1.01360 1.03251 0.96615 1.69812 1.37091 1.50101 1.05157 0.85271 0.80707 0.78402 0.76193 1.21919 1.22934 1.19190 0.91708 0.93680 0.92276 0.91689 0.93566 0.89405 0.89838 0.88285 0.89544 0.87192 0.88493 0.86356 0.94195 0.87467 0.92998 0.89216 0.90129 0.86803 0.88728 0.93269 0.91084 0.79815 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.67 71.98 0.70 -3.03 16 2 C -0.11 -3.27 5.31 30.59 0.16 -3.11 16 3 C -0.09 -2.74 1.93 -10.72 -0.02 -2.76 16 4 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.13 3.07 5.33 86.36 0.46 3.53 16 6 N -0.60 -13.47 2.96 -818.92 -2.42 -15.90 16 7 C 0.53 12.48 5.03 87.66 0.44 12.92 16 8 O -0.56 -16.60 13.56 -3.02 -0.04 -16.64 16 9 C -0.11 -2.04 0.36 -52.81 -0.02 -2.06 16 10 C 0.06 1.16 6.04 71.98 0.44 1.60 16 11 F -0.21 -4.19 16.23 44.97 0.73 -3.46 16 12 C -0.16 -2.55 4.41 30.68 0.14 -2.41 16 13 C 0.06 1.02 6.62 72.01 0.48 1.50 16 14 O -0.40 -8.51 10.77 -148.98 -1.60 -10.12 16 15 C 0.06 1.13 6.56 72.01 0.47 1.60 16 16 C -0.13 -2.43 4.50 30.69 0.14 -2.30 16 17 C 0.09 1.81 3.92 86.36 0.34 2.15 16 18 C -0.15 -4.13 5.51 30.67 0.17 -3.96 16 19 C 0.18 6.09 2.19 45.02 0.10 6.19 16 20 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 21 N -0.73 -33.53 4.33 -322.81 -1.40 -34.93 16 22 C -0.23 -11.71 9.93 84.03 0.83 -10.88 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 25 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 26 Si 0.96 44.42 29.55 68.60 2.03 46.44 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 30 H 0.06 1.47 6.70 -2.38 -0.02 1.45 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.77 7.22 -2.38 -0.02 1.75 16 35 H 0.09 2.29 5.72 -2.39 -0.01 2.28 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 1.75 4.92 -2.39 -0.01 1.74 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.45 4.37 -2.39 -0.01 1.44 16 40 H 0.10 1.49 7.58 -2.39 -0.02 1.48 16 41 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 0.77 7.38 -2.38 -0.02 0.75 16 43 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.26 6.07 -2.39 -0.01 1.25 16 45 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 46 H 0.08 1.60 7.93 -2.39 -0.02 1.58 16 47 H 0.11 1.85 2.69 -2.39 -0.01 1.85 16 48 H 0.09 1.56 7.99 -2.39 -0.02 1.54 16 49 H 0.05 1.51 8.09 -2.39 -0.02 1.49 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.37 18.97 7.51 -92.71 -0.70 18.27 16 52 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -64.20 384.13 3.09 -61.11 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.23 Total: 35.46 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.28 Total: -4.63 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.54 Total: -108.16 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.64 Total: -26.76 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.73 Total: -3.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.20 3.09 -61.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037936341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.779 kcal (2) G-P(sol) polarization free energy of solvation -64.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds