Wall clock time and date at job start Wed Apr 1 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47228 * 2 1 4 4 H 1.08998 * 109.52130 * 54.91575 * 3 2 1 5 5 C 1.53165 * 109.47851 * 294.84570 * 3 2 1 6 6 N 1.46921 * 108.77000 * 185.40274 * 5 3 2 7 7 C 1.34775 * 120.63464 * 233.58516 * 6 5 3 8 8 O 1.21278 * 119.99719 * 355.14161 * 7 6 5 9 9 C 1.50700 * 120.00117 * 175.13622 * 7 6 5 10 10 C 1.53004 * 109.54022 * 301.26520 * 9 7 6 11 11 F 1.39895 * 109.47395 * 293.89285 * 10 9 7 12 12 C 1.53181 * 109.54064 * 181.09281 * 9 7 6 13 13 C 1.53280 * 109.05820 * 297.02294 * 12 9 7 14 14 O 1.42898 * 109.46614 * 302.44933 * 13 12 9 15 15 C 1.42898 * 114.09578 * 61.16130 * 14 13 12 16 16 C 1.53099 * 109.41526 * 298.84079 * 15 14 13 17 17 C 1.46932 * 118.73608 * 53.60855 * 6 5 3 18 18 C 1.53187 * 108.77572 * 306.39266 * 17 6 5 19 19 C 1.53035 * 109.49821 * 175.00224 * 3 2 1 20 20 H 1.09004 * 109.45896 * 301.31963 * 19 3 2 21 21 N 1.46495 * 109.46400 * 61.29609 * 19 3 2 22 22 C 1.36938 * 120.00400 * 205.02996 * 21 19 3 23 23 H 1.08000 * 119.99356 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00392 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99802 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47109 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.47105 * 299.99472 * 26 24 22 29 29 H 1.48502 * 109.47245 * 59.99469 * 26 24 22 30 30 H 1.09003 * 109.47075 * 60.00089 * 1 2 3 31 31 H 1.09000 * 109.46789 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47032 * 299.99902 * 1 2 3 33 33 H 1.09001 * 109.47032 * 240.00098 * 2 1 3 34 34 H 1.08997 * 109.47713 * 120.00155 * 2 1 3 35 35 H 1.09003 * 109.58943 * 65.61858 * 5 3 2 36 36 H 1.09007 * 109.70875 * 305.26415 * 5 3 2 37 37 H 1.09000 * 109.47410 * 53.90125 * 10 9 7 38 38 H 1.09006 * 109.46416 * 173.89543 * 10 9 7 39 39 H 1.08994 * 109.52669 * 57.01750 * 12 9 7 40 40 H 1.09003 * 109.51619 * 177.20529 * 12 9 7 41 41 H 1.09006 * 109.45239 * 182.44801 * 13 12 9 42 42 H 1.08999 * 109.46588 * 62.45496 * 13 12 9 43 43 H 1.09001 * 109.48034 * 178.86072 * 15 14 13 44 44 H 1.08999 * 109.48624 * 58.82460 * 15 14 13 45 45 H 1.08998 * 109.52012 * 297.70421 * 16 15 14 46 46 H 1.08998 * 109.52289 * 177.51574 * 16 15 14 47 47 H 1.09000 * 109.58717 * 186.60243 * 17 6 5 48 48 H 1.09006 * 109.58475 * 66.18050 * 17 6 5 49 49 H 1.08994 * 109.49914 * 294.68462 * 18 17 6 50 50 H 1.08999 * 109.52279 * 174.59962 * 18 17 6 51 51 H 0.97003 * 119.99775 * 25.03008 * 21 19 3 52 52 H 0.96999 * 120.00294 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6382 2.1263 -1.3103 6 7 2.2445 3.4640 -1.3508 7 6 1.4849 4.5559 -1.5683 8 8 0.3050 4.4333 -1.8203 9 6 2.1018 5.9291 -1.4982 10 6 2.7123 6.1457 -0.1120 11 9 1.6941 6.1729 0.8469 12 6 1.0254 6.9881 -1.7552 13 6 0.4769 6.8099 -3.1754 14 8 1.5486 6.9077 -4.1155 15 6 2.5613 5.9130 -3.9513 16 6 3.1942 6.0551 -2.5645 17 6 3.6946 3.5887 -1.1500 18 6 4.0733 2.8883 0.1586 19 6 3.5652 1.4450 0.1257 20 1 3.8546 0.9371 1.0457 21 7 4.1507 0.7476 -1.0218 22 6 5.3883 0.1713 -0.9143 23 1 5.9328 0.2314 0.0164 24 6 5.9433 -0.4891 -2.0018 25 7 5.2798 -0.5619 -3.1362 26 14 7.6317 -1.2745 -1.8553 27 1 7.9946 -1.9125 -3.1463 28 1 8.6348 -0.2326 -1.5184 29 1 7.6079 -2.3033 -0.7847 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5529 2.2154 -1.3583 36 1 1.9942 1.5380 -2.1562 37 1 3.4015 5.3317 0.1128 38 1 3.2514 7.0930 -0.0966 39 1 0.2177 6.8694 -1.0330 40 1 1.4613 7.9821 -1.6555 41 1 -0.2589 7.5875 -3.3806 42 1 0.0052 5.8311 -3.2625 43 1 3.3274 6.0445 -4.7156 44 1 2.1171 4.9224 -4.0484 45 1 3.6738 7.0303 -2.4812 46 1 3.9361 5.2697 -2.4205 47 1 3.9662 4.6428 -1.0922 48 1 4.2203 3.1189 -1.9814 49 1 3.6189 3.4149 0.9978 50 1 5.1574 2.8897 0.2721 51 1 3.6617 0.6939 -1.8579 52 1 5.6674 -1.0237 -3.8961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037936342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:03 Heat of formation + Delta-G solvation = -129.085008 kcal Electronic energy + Delta-G solvation = -33768.632684 eV Core-core repulsion = 29489.301096 eV Total energy + Delta-G solvation = -4279.331588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.71027 -42.26611 -40.16037 -38.75406 -36.53318 -35.59986 -34.97250 -33.42973 -32.11383 -31.09447 -30.04994 -28.84865 -26.93792 -25.48465 -25.42605 -24.47114 -24.13042 -22.80118 -22.08637 -20.48827 -19.54873 -19.25898 -17.95193 -17.69803 -17.47330 -17.01713 -16.74861 -16.68047 -16.52280 -16.18616 -15.85245 -15.76496 -15.47673 -15.21237 -14.90437 -14.84061 -14.64993 -14.53428 -14.22950 -14.13563 -13.73255 -13.44937 -13.23557 -13.03935 -12.94445 -12.80030 -12.67955 -12.62011 -12.40069 -12.28490 -12.19265 -12.14485 -11.98111 -11.86338 -11.65584 -11.56215 -11.49175 -11.43471 -11.13757 -10.86859 -10.55320 -10.36890 -9.61716 -8.90645 -7.86728 -5.12853 1.48838 1.51422 1.52632 1.58152 1.92219 2.61422 2.87620 3.12782 3.21558 3.46987 3.49426 3.64985 3.76616 3.84871 3.87490 3.97285 4.03468 4.05586 4.16573 4.20404 4.22881 4.31794 4.40738 4.42038 4.44303 4.52083 4.55541 4.60335 4.61973 4.65777 4.75173 4.79801 4.82497 4.85437 4.94848 5.00133 5.01263 5.02796 5.11304 5.15474 5.21112 5.23617 5.29560 5.37970 5.49830 5.61377 5.64420 6.17072 6.34498 6.40678 7.06966 7.42702 8.18338 8.42234 9.36252 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.004043 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.497504 B = 6923.517489 C = 7720.672548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.081 0.919 5 C 0.126 3.874 6 N -0.597 5.597 7 C 0.519 3.481 8 O -0.573 6.573 9 C -0.109 4.109 10 C 0.055 3.945 11 F -0.224 7.224 12 C -0.121 4.121 13 C 0.049 3.951 14 O -0.392 6.392 15 C 0.057 3.943 16 C -0.155 4.155 17 C 0.098 3.902 18 C -0.147 4.147 19 C 0.173 3.827 20 H 0.047 0.953 21 N -0.723 5.723 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.069 4.069 25 N -0.969 5.969 26 Si 0.961 3.039 27 H -0.304 1.304 28 H -0.277 1.277 29 H -0.285 1.285 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.117 0.883 44 H 0.022 0.978 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.121 0.879 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.373 0.627 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 16.084 6.068 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.099 0.901 5 C 0.003 3.997 6 N -0.328 5.328 7 C 0.308 3.692 8 O -0.453 6.453 9 C -0.112 4.112 10 C 0.001 3.999 11 F -0.205 7.205 12 C -0.159 4.159 13 C -0.027 4.027 14 O -0.311 6.311 15 C -0.019 4.019 16 C -0.192 4.192 17 C -0.024 4.024 18 C -0.187 4.187 19 C 0.064 3.936 20 H 0.065 0.935 21 N -0.364 5.364 22 C -0.358 4.358 23 H 0.094 0.906 24 C -0.262 4.262 25 N -0.620 5.620 26 Si 0.792 3.208 27 H -0.231 1.231 28 H -0.204 1.204 29 H -0.211 1.211 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.066 0.934 43 H 0.135 0.865 44 H 0.041 0.959 45 H 0.138 0.862 46 H 0.120 0.880 47 H 0.139 0.861 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.206 0.794 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.584 16.080 5.898 18.015 hybrid contribution 0.598 -1.461 -0.408 1.631 sum -4.986 14.619 5.490 16.393 Atomic orbital electron populations 1.21781 0.94941 1.01896 1.01706 1.21338 0.95920 0.95292 1.01782 1.21641 0.96151 0.96322 0.97009 0.90073 1.21477 0.98360 0.82195 0.97648 1.48109 1.08855 1.06144 1.69669 1.20818 0.86159 0.86685 0.75556 1.90594 1.17553 1.87048 1.50108 1.21555 0.98878 0.92332 0.98465 1.22712 0.87628 1.07086 0.82485 1.92758 1.63588 1.98288 1.65908 1.21989 0.97813 0.98154 0.97973 1.22857 0.89323 1.02684 0.87876 1.87879 1.33986 1.53653 1.55550 1.22611 0.90963 0.90535 0.97813 1.22657 0.96755 1.06781 0.92994 1.22340 0.78726 1.02365 0.98925 1.22476 1.01921 0.97791 0.96534 1.20415 0.90723 0.91627 0.90815 0.93474 1.42559 1.18261 1.64265 1.11282 1.19518 0.94237 1.25301 0.96704 0.90638 1.25330 1.01607 1.03148 0.96090 1.69792 1.39610 1.49763 1.02841 0.85397 0.81215 0.78472 0.75749 1.23106 1.20354 1.21137 0.93412 0.92129 0.91959 0.93670 0.91882 0.90198 0.93422 0.88265 0.85703 0.90854 0.87837 0.87366 0.93387 0.86467 0.95943 0.86158 0.88045 0.86124 0.92154 0.90704 0.90648 0.79360 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.67 71.98 0.70 -3.18 16 2 C -0.11 -3.32 5.19 30.59 0.16 -3.17 16 3 C -0.09 -2.86 2.14 -10.73 -0.02 -2.88 16 4 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.13 4.22 5.01 86.35 0.43 4.65 16 6 N -0.60 -17.89 2.97 -818.95 -2.43 -20.32 16 7 C 0.52 15.46 5.03 87.66 0.44 15.90 16 8 O -0.57 -20.79 13.24 -3.02 -0.04 -20.83 16 9 C -0.11 -2.34 0.36 -52.81 -0.02 -2.36 16 10 C 0.06 0.96 6.02 71.98 0.43 1.40 16 11 F -0.22 -5.33 16.53 44.97 0.74 -4.59 16 12 C -0.12 -2.57 4.35 30.75 0.13 -2.44 16 13 C 0.05 1.19 6.55 72.08 0.47 1.66 16 14 O -0.39 -9.92 10.77 -148.98 -1.60 -11.52 16 15 C 0.06 1.33 6.62 72.02 0.48 1.81 16 16 C -0.15 -2.81 4.57 30.68 0.14 -2.67 16 17 C 0.10 2.66 3.84 86.36 0.33 2.99 16 18 C -0.15 -4.13 5.45 30.67 0.17 -3.97 16 19 C 0.17 5.97 2.53 45.02 0.11 6.09 16 20 H 0.05 1.69 8.08 -2.38 -0.02 1.67 16 21 N -0.72 -31.96 3.72 -322.82 -1.20 -33.16 16 22 C -0.23 -11.29 9.93 84.03 0.83 -10.45 16 23 H 0.08 3.62 7.83 -2.91 -0.02 3.60 16 24 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 25 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 26 Si 0.96 43.88 29.55 68.60 2.03 45.91 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 29 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 30 H 0.05 1.32 6.70 -2.39 -0.02 1.30 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.71 7.70 -2.39 -0.02 1.70 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.76 5.76 -2.39 -0.01 2.75 16 36 H 0.05 1.85 6.65 -2.38 -0.02 1.84 16 37 H 0.10 1.67 3.99 -2.39 -0.01 1.66 16 38 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.75 7.68 -2.39 -0.02 1.73 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.05 1.47 5.77 -2.39 -0.01 1.46 16 43 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.02 0.65 7.38 -2.39 -0.02 0.63 16 45 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.10 1.84 4.67 -2.39 -0.01 1.82 16 47 H 0.12 2.40 2.63 -2.39 -0.01 2.39 16 48 H 0.06 2.04 7.74 -2.38 -0.02 2.02 16 49 H 0.07 1.78 7.55 -2.39 -0.02 1.76 16 50 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.37 18.30 5.95 -92.71 -0.55 17.74 16 52 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -65.28 379.70 3.42 -61.86 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.39 Total: 38.49 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.26 Total: 0.13 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.35 Total: -109.45 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.64 Total: -32.35 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.74 Total: -4.59 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.28 3.42 -61.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037936342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.221 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds