Wall clock time and date at job start Wed Apr 1 2020 02:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47213 * 2 1 4 4 H 1.09001 * 109.52216 * 305.08057 * 3 2 1 5 5 C 1.53193 * 109.49385 * 65.16029 * 3 2 1 6 6 N 1.46931 * 108.77244 * 174.58511 * 5 3 2 7 7 C 1.34773 * 120.62702 * 126.41245 * 6 5 3 8 8 O 1.21283 * 120.00620 * 354.95898 * 7 6 5 9 9 C 1.50699 * 119.99991 * 174.95804 * 7 6 5 10 10 C 1.53006 * 109.54336 * 306.63171 * 9 7 6 11 11 F 1.39903 * 109.46953 * 305.08006 * 10 9 7 12 12 C 1.53175 * 109.54621 * 186.45606 * 9 7 6 13 13 C 1.53275 * 109.06572 * 297.02803 * 12 9 7 14 14 O 1.42907 * 109.46138 * 302.44573 * 13 12 9 15 15 C 1.42903 * 114.09473 * 61.15255 * 14 13 12 16 16 C 1.53089 * 109.41870 * 298.84300 * 15 14 13 17 17 C 1.46922 * 118.74123 * 306.39258 * 6 5 3 18 18 C 1.53196 * 108.77206 * 53.60599 * 17 6 5 19 19 C 1.53033 * 109.49697 * 185.00059 * 3 2 1 20 20 H 1.09002 * 109.46553 * 58.67791 * 19 3 2 21 21 N 1.46499 * 109.46067 * 298.70306 * 19 3 2 22 22 C 1.36939 * 119.99936 * 155.00138 * 21 19 3 23 23 H 1.07996 * 120.00314 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99813 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00205 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00157 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46866 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47476 * 240.00511 * 26 24 22 29 29 H 1.48507 * 109.47115 * 119.99898 * 26 24 22 30 30 H 1.09004 * 109.47016 * 59.99652 * 1 2 3 31 31 H 1.08993 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46940 * 300.00160 * 1 2 3 33 33 H 1.09001 * 109.47068 * 240.00611 * 2 1 3 34 34 H 1.09000 * 109.47054 * 119.99825 * 2 1 3 35 35 H 1.09001 * 109.59039 * 294.37405 * 5 3 2 36 36 H 1.09000 * 109.58894 * 54.66178 * 5 3 2 37 37 H 1.08998 * 109.46947 * 65.07222 * 10 9 7 38 38 H 1.08998 * 109.47351 * 185.07790 * 10 9 7 39 39 H 1.09000 * 109.52118 * 57.01815 * 12 9 7 40 40 H 1.09000 * 109.52329 * 177.20519 * 12 9 7 41 41 H 1.08997 * 109.46225 * 182.44866 * 13 12 9 42 42 H 1.09005 * 109.46894 * 62.44365 * 13 12 9 43 43 H 1.09003 * 109.48204 * 178.86042 * 15 14 13 44 44 H 1.09002 * 109.49083 * 58.83837 * 15 14 13 45 45 H 1.08998 * 109.52252 * 297.70691 * 16 15 14 46 46 H 1.09002 * 109.52241 * 177.51593 * 16 15 14 47 47 H 1.08995 * 109.58543 * 173.39383 * 17 6 5 48 48 H 1.09000 * 109.58911 * 293.67869 * 17 6 5 49 49 H 1.09002 * 109.49737 * 185.41027 * 18 17 6 50 50 H 1.09000 * 109.49553 * 65.32174 * 18 17 6 51 51 H 0.97001 * 120.00281 * 334.99822 * 21 19 3 52 52 H 0.96998 * 119.99698 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4644 1.3508 7 6 1.4858 4.5564 1.5682 8 8 0.2797 4.4517 1.6417 9 6 2.1353 5.9078 1.7199 10 6 3.2139 5.8385 2.8028 11 9 2.6535 5.3520 3.9888 12 6 1.0779 6.9430 2.1154 13 6 0.0460 7.0605 0.9882 14 8 0.7070 7.4192 -0.2270 15 6 1.6739 6.4642 -0.6690 16 6 2.7708 6.3232 0.3895 17 6 3.6952 3.5888 1.1499 18 6 4.0736 2.8881 -0.1588 19 6 3.5652 1.4451 -0.1257 20 1 3.8546 0.9371 -1.0457 21 7 4.1507 0.7475 1.0218 22 6 5.3885 0.1718 0.9144 23 1 5.9333 0.2323 -0.0161 24 6 5.9435 -0.4886 2.0019 25 7 5.2797 -0.5620 3.1362 26 14 7.6317 -1.2746 1.8553 27 1 8.1635 -1.0533 0.4865 28 1 7.5232 -2.7327 2.1148 29 1 8.5508 -0.6621 2.8480 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5532 2.2161 1.3586 36 1 1.9943 1.5364 2.1549 37 1 4.0125 5.1715 2.4781 38 1 3.6204 6.8351 2.9751 39 1 0.5832 6.6259 3.0334 40 1 1.5559 7.9098 2.2734 41 1 -0.6855 7.8271 1.2439 42 1 -0.4602 6.1040 0.8579 43 1 2.1151 6.8010 -1.6071 44 1 1.1892 5.4997 -0.8210 45 1 3.2829 7.2775 0.5127 46 1 3.4857 5.5631 0.0743 47 1 3.9669 4.6428 1.0920 48 1 4.2209 3.1212 1.9825 49 1 5.1577 2.8894 -0.2719 50 1 3.6193 3.4148 -0.9980 51 1 3.6616 0.6935 1.8577 52 1 4.4026 -0.1548 3.2120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037936343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:07 Heat of formation + Delta-G solvation = -110.862539 kcal Electronic energy + Delta-G solvation = -33874.039878 eV Core-core repulsion = 29595.498476 eV Total energy + Delta-G solvation = -4278.541403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -47.74413 -41.19383 -39.04351 -37.59680 -35.41682 -34.28191 -33.86513 -31.89415 -31.26257 -29.51897 -28.66271 -27.81380 -25.63104 -24.31225 -23.59934 -23.55179 -23.12235 -21.73440 -20.93015 -19.36608 -18.49056 -17.45775 -16.91725 -16.74402 -16.33388 -15.99431 -15.79594 -15.64039 -15.32300 -15.03320 -14.75684 -14.41154 -14.26694 -13.85268 -13.72045 -13.64017 -13.47099 -13.35669 -13.23279 -12.87965 -12.62849 -12.34796 -12.22932 -11.90770 -11.68524 -11.60552 -11.58343 -11.40143 -11.12951 -11.01339 -10.77518 -10.74117 -10.57170 -10.50586 -10.37595 -10.25482 -10.09442 -9.94794 -9.64903 -9.29667 -9.21354 -8.97333 -8.37458 -7.09575 -6.15119 -3.16251 2.59861 3.04329 3.47312 3.53077 3.62191 3.74315 4.04916 4.08069 4.37461 4.59837 4.61127 4.69257 4.81868 4.91943 4.95750 5.03887 5.10718 5.15818 5.22937 5.29663 5.34040 5.38196 5.41108 5.45859 5.54342 5.57796 5.58094 5.61804 5.65122 5.66485 5.74459 5.77507 5.87161 5.89224 5.97783 6.02610 6.06228 6.19186 6.23249 6.28060 6.42402 6.47556 6.53096 6.62698 6.76652 6.85127 7.06916 7.53882 7.76225 8.20795 8.69394 9.15455 10.02003 10.17273 11.32403 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004000 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.928566 B = 6997.695855 C = 7812.528456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.595 5.595 7 C 0.528 3.472 8 O -0.542 6.542 9 C -0.111 4.111 10 C 0.055 3.945 11 F -0.207 7.207 12 C -0.127 4.127 13 C 0.048 3.952 14 O -0.384 6.384 15 C 0.064 3.936 16 C -0.156 4.156 17 C 0.092 3.908 18 C -0.150 4.150 19 C 0.185 3.815 20 H 0.052 0.948 21 N -0.729 5.729 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.042 4.042 25 N -0.943 5.943 26 Si 1.082 2.918 27 H -0.295 1.295 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.050 0.950 51 H 0.367 0.633 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 14.305 -6.448 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.326 5.326 7 C 0.315 3.685 8 O -0.420 6.420 9 C -0.115 4.115 10 C 0.001 3.999 11 F -0.188 7.188 12 C -0.165 4.165 13 C -0.028 4.028 14 O -0.303 6.303 15 C -0.013 4.013 16 C -0.194 4.194 17 C -0.030 4.030 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.070 0.930 21 N -0.373 5.373 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.240 4.240 25 N -0.588 5.588 26 Si 0.914 3.086 27 H -0.222 1.222 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.069 0.931 51 H 0.201 0.799 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.792 13.507 -5.854 15.819 hybrid contribution -0.980 0.562 -0.296 1.167 sum -6.771 14.069 -6.150 16.781 Atomic orbital electron populations 1.21849 0.96636 1.01154 1.01399 1.21404 0.94424 0.95647 1.03220 1.21769 0.97395 0.96189 0.97016 0.91446 1.21683 0.98946 0.81530 0.98119 1.48035 1.08475 1.06505 1.69617 1.20081 0.87013 0.85202 0.76185 1.90582 1.14061 1.85701 1.51633 1.21495 0.97760 0.94801 0.97422 1.22554 0.95084 1.01561 0.80744 1.92809 1.87189 1.90012 1.48765 1.22038 0.96573 0.97325 1.00522 1.22940 0.93966 1.02831 0.83091 1.87886 1.54921 1.46445 1.41037 1.22498 0.88962 0.93359 0.96509 1.22537 0.99576 1.03758 0.93515 1.22343 0.79684 1.00695 1.00279 1.22542 1.02000 0.99445 0.95143 1.20131 0.89524 0.90451 0.92448 0.92980 1.42486 1.19444 1.65139 1.10225 1.20062 0.94624 1.31782 0.99667 0.91761 1.25680 1.05533 1.00082 0.92718 1.70836 1.14457 1.47591 1.25907 0.83188 0.74751 0.76322 0.74376 1.22198 1.22104 1.22132 0.93268 0.93050 0.92823 0.91909 0.90909 0.89399 0.91197 0.88503 0.89819 0.89774 0.90548 0.89148 0.89808 0.88409 0.93037 0.89421 0.88559 0.89531 0.89848 0.90511 0.93119 0.79873 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.83 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.94 5.04 -3.71 -0.02 1.92 16 6 N -0.60 -9.05 2.96 -172.77 -0.51 -9.56 16 7 C 0.53 7.97 4.85 -10.99 -0.05 7.92 16 8 O -0.54 -9.50 13.07 5.55 0.07 -9.42 16 9 C -0.11 -1.32 0.36 -155.48 -0.06 -1.38 16 10 C 0.06 0.64 5.96 37.16 0.22 0.86 16 11 F -0.21 -3.13 16.69 2.25 0.04 -3.09 16 12 C -0.13 -1.46 4.49 -26.50 -0.12 -1.58 16 13 C 0.05 0.58 6.56 37.30 0.24 0.82 16 14 O -0.38 -4.79 10.77 -35.23 -0.38 -5.17 16 15 C 0.06 0.69 6.61 37.20 0.25 0.94 16 16 C -0.16 -1.53 4.62 -26.59 -0.12 -1.66 16 17 C 0.09 1.33 3.78 -3.71 -0.01 1.32 16 18 C -0.15 -2.27 5.65 -26.61 -0.15 -2.42 16 19 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.73 -16.10 3.72 -53.39 -0.20 -16.30 16 22 C -0.33 -8.46 9.93 -15.06 -0.15 -8.61 16 23 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 24 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 25 N -0.94 -27.77 13.70 55.49 0.76 -27.01 16 26 Si 1.08 24.92 29.92 -169.99 -5.09 19.83 16 27 H -0.30 -6.39 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 35 H 0.09 1.46 5.72 -51.93 -0.30 1.16 16 36 H 0.07 1.27 6.65 -51.93 -0.35 0.93 16 37 H 0.10 1.10 4.56 -51.93 -0.24 0.86 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.07 7.99 -51.93 -0.42 0.65 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.20 5.58 -51.93 -0.29 0.91 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.90 4.95 -51.93 -0.26 0.65 16 47 H 0.09 1.00 2.47 -51.93 -0.13 0.88 16 48 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.37 8.58 4.78 -40.82 -0.19 8.39 16 52 H 0.25 7.42 6.77 -40.82 -0.28 7.14 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -30.67 379.42 -8.05 -38.71 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -8.25 Total: 11.61 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.21 Total: -5.33 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.05 Total: -52.86 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.31 Total: -14.59 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.67 -8.05 -38.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037936343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.148 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds