Wall clock time and date at job start Wed Apr 1 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47213 * 2 1 4 4 H 1.09001 * 109.52216 * 305.08057 * 3 2 1 5 5 C 1.53193 * 109.49385 * 65.16029 * 3 2 1 6 6 N 1.46931 * 108.77244 * 174.58511 * 5 3 2 7 7 C 1.34773 * 120.62702 * 126.41245 * 6 5 3 8 8 O 1.21283 * 120.00620 * 354.95898 * 7 6 5 9 9 C 1.50699 * 119.99991 * 174.95804 * 7 6 5 10 10 C 1.53006 * 109.54336 * 306.63171 * 9 7 6 11 11 F 1.39903 * 109.46953 * 305.08006 * 10 9 7 12 12 C 1.53175 * 109.54621 * 186.45606 * 9 7 6 13 13 C 1.53275 * 109.06572 * 297.02803 * 12 9 7 14 14 O 1.42907 * 109.46138 * 302.44573 * 13 12 9 15 15 C 1.42903 * 114.09473 * 61.15255 * 14 13 12 16 16 C 1.53089 * 109.41870 * 298.84300 * 15 14 13 17 17 C 1.46922 * 118.74123 * 306.39258 * 6 5 3 18 18 C 1.53196 * 108.77206 * 53.60599 * 17 6 5 19 19 C 1.53033 * 109.49697 * 185.00059 * 3 2 1 20 20 H 1.09002 * 109.46553 * 58.67791 * 19 3 2 21 21 N 1.46499 * 109.46067 * 298.70306 * 19 3 2 22 22 C 1.36939 * 119.99936 * 155.00138 * 21 19 3 23 23 H 1.07996 * 120.00314 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99813 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00205 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00157 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46866 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47476 * 240.00511 * 26 24 22 29 29 H 1.48507 * 109.47115 * 119.99898 * 26 24 22 30 30 H 1.09004 * 109.47016 * 59.99652 * 1 2 3 31 31 H 1.08993 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46940 * 300.00160 * 1 2 3 33 33 H 1.09001 * 109.47068 * 240.00611 * 2 1 3 34 34 H 1.09000 * 109.47054 * 119.99825 * 2 1 3 35 35 H 1.09001 * 109.59039 * 294.37405 * 5 3 2 36 36 H 1.09000 * 109.58894 * 54.66178 * 5 3 2 37 37 H 1.08998 * 109.46947 * 65.07222 * 10 9 7 38 38 H 1.08998 * 109.47351 * 185.07790 * 10 9 7 39 39 H 1.09000 * 109.52118 * 57.01815 * 12 9 7 40 40 H 1.09000 * 109.52329 * 177.20519 * 12 9 7 41 41 H 1.08997 * 109.46225 * 182.44866 * 13 12 9 42 42 H 1.09005 * 109.46894 * 62.44365 * 13 12 9 43 43 H 1.09003 * 109.48204 * 178.86042 * 15 14 13 44 44 H 1.09002 * 109.49083 * 58.83837 * 15 14 13 45 45 H 1.08998 * 109.52252 * 297.70691 * 16 15 14 46 46 H 1.09002 * 109.52241 * 177.51593 * 16 15 14 47 47 H 1.08995 * 109.58543 * 173.39383 * 17 6 5 48 48 H 1.09000 * 109.58911 * 293.67869 * 17 6 5 49 49 H 1.09002 * 109.49737 * 185.41027 * 18 17 6 50 50 H 1.09000 * 109.49553 * 65.32174 * 18 17 6 51 51 H 0.97001 * 120.00281 * 334.99822 * 21 19 3 52 52 H 0.96998 * 119.99698 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4644 1.3508 7 6 1.4858 4.5564 1.5682 8 8 0.2797 4.4517 1.6417 9 6 2.1353 5.9078 1.7199 10 6 3.2139 5.8385 2.8028 11 9 2.6535 5.3520 3.9888 12 6 1.0779 6.9430 2.1154 13 6 0.0460 7.0605 0.9882 14 8 0.7070 7.4192 -0.2270 15 6 1.6739 6.4642 -0.6690 16 6 2.7708 6.3232 0.3895 17 6 3.6952 3.5888 1.1499 18 6 4.0736 2.8881 -0.1588 19 6 3.5652 1.4451 -0.1257 20 1 3.8546 0.9371 -1.0457 21 7 4.1507 0.7475 1.0218 22 6 5.3885 0.1718 0.9144 23 1 5.9333 0.2323 -0.0161 24 6 5.9435 -0.4886 2.0019 25 7 5.2797 -0.5620 3.1362 26 14 7.6317 -1.2746 1.8553 27 1 8.1635 -1.0533 0.4865 28 1 7.5232 -2.7327 2.1148 29 1 8.5508 -0.6621 2.8480 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5532 2.2161 1.3586 36 1 1.9943 1.5364 2.1549 37 1 4.0125 5.1715 2.4781 38 1 3.6204 6.8351 2.9751 39 1 0.5832 6.6259 3.0334 40 1 1.5559 7.9098 2.2734 41 1 -0.6855 7.8271 1.2439 42 1 -0.4602 6.1040 0.8579 43 1 2.1151 6.8010 -1.6071 44 1 1.1892 5.4997 -0.8210 45 1 3.2829 7.2775 0.5127 46 1 3.4857 5.5631 0.0743 47 1 3.9669 4.6428 1.0920 48 1 4.2209 3.1212 1.9825 49 1 5.1577 2.8894 -0.2719 50 1 3.6193 3.4148 -0.9980 51 1 3.6616 0.6935 1.8577 52 1 4.4026 -0.1548 3.2120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037936343.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:06 Heat of formation + Delta-G solvation = -129.473656 kcal Electronic energy + Delta-G solvation = -33874.846917 eV Core-core repulsion = 29595.498476 eV Total energy + Delta-G solvation = -4279.348441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.80700 -42.31017 -40.23300 -38.79939 -36.60468 -35.87791 -35.06006 -33.50604 -32.14680 -30.95648 -30.06880 -28.83244 -26.94892 -25.50051 -25.41699 -24.57448 -24.17450 -22.79360 -22.21833 -20.63351 -19.82057 -19.28424 -18.05104 -17.75382 -17.33933 -17.05338 -16.90259 -16.85860 -16.66553 -16.17570 -16.06575 -15.62783 -15.53345 -15.41298 -14.98871 -14.85766 -14.73722 -14.58018 -14.42856 -14.19864 -13.72398 -13.46338 -13.34480 -13.17851 -12.98496 -12.73258 -12.69150 -12.64776 -12.41337 -12.35455 -12.17386 -11.97161 -11.86648 -11.70564 -11.69819 -11.54379 -11.51717 -11.45105 -11.06881 -10.89832 -10.59333 -10.36297 -9.69315 -9.01850 -8.29468 -5.23068 1.42757 1.60862 1.70904 1.81671 1.84674 2.74921 2.88634 3.05352 3.17876 3.45370 3.47534 3.58553 3.67133 3.74951 3.80422 3.89236 3.93059 3.99603 4.10704 4.13242 4.21540 4.25799 4.30786 4.34743 4.39264 4.44205 4.49465 4.53243 4.57418 4.59012 4.71775 4.73736 4.75931 4.81304 4.87856 4.91269 4.96650 5.00370 5.06675 5.10568 5.12820 5.15751 5.20900 5.29553 5.39984 5.55447 5.70787 6.18617 6.33160 6.56324 7.00479 7.16478 8.07787 8.20642 9.21599 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004000 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.928566 B = 6997.695855 C = 7812.528456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.086 0.914 5 C 0.125 3.875 6 N -0.597 5.597 7 C 0.522 3.478 8 O -0.570 6.570 9 C -0.108 4.108 10 C 0.047 3.953 11 F -0.231 7.231 12 C -0.124 4.124 13 C 0.050 3.950 14 O -0.391 6.391 15 C 0.059 3.941 16 C -0.150 4.150 17 C 0.099 3.901 18 C -0.142 4.142 19 C 0.177 3.823 20 H 0.046 0.954 21 N -0.736 5.736 22 C -0.312 4.312 23 H 0.068 0.932 24 C -0.104 4.104 25 N -0.980 5.980 26 Si 1.126 2.874 27 H -0.270 1.270 28 H -0.300 1.300 29 H -0.296 1.296 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.030 0.970 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.358 0.642 52 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 16.792 -8.517 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.105 0.895 5 C 0.002 3.998 6 N -0.327 5.327 7 C 0.311 3.689 8 O -0.450 6.450 9 C -0.112 4.112 10 C -0.007 4.007 11 F -0.212 7.212 12 C -0.162 4.162 13 C -0.027 4.027 14 O -0.310 6.310 15 C -0.017 4.017 16 C -0.187 4.187 17 C -0.023 4.023 18 C -0.183 4.183 19 C 0.069 3.931 20 H 0.064 0.936 21 N -0.379 5.379 22 C -0.444 4.444 23 H 0.086 0.914 24 C -0.295 4.295 25 N -0.629 5.629 26 Si 0.953 3.047 27 H -0.195 1.195 28 H -0.228 1.228 29 H -0.223 1.223 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.048 0.952 45 H 0.137 0.863 46 H 0.121 0.879 47 H 0.141 0.859 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.191 0.809 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.920 16.028 -7.982 18.569 hybrid contribution -1.352 -0.189 0.276 1.392 sum -6.271 15.839 -7.706 18.697 Atomic orbital electron populations 1.21776 0.94647 1.01988 1.01850 1.21337 0.96160 0.95306 1.01516 1.21657 0.95941 0.96303 0.97132 0.89534 1.21477 0.98633 0.82226 0.97437 1.48077 1.08770 1.06132 1.69763 1.20784 0.86778 0.86269 0.75074 1.90578 1.15478 1.86305 1.52610 1.21565 0.98003 0.92578 0.99035 1.22848 0.94651 1.03648 0.79549 1.92763 1.87594 1.90534 1.50334 1.22038 0.96379 0.98348 0.99405 1.22874 0.94405 1.01951 0.83441 1.87881 1.55347 1.46769 1.41017 1.22651 0.88826 0.92307 0.97959 1.22565 0.99183 1.05446 0.91514 1.22330 0.78842 1.02524 0.98580 1.22414 1.01753 0.97516 0.96576 1.20378 0.90743 0.91654 0.90371 0.93634 1.42603 1.18588 1.65552 1.11131 1.20359 0.95321 1.29612 0.99119 0.91407 1.26882 1.08374 1.01594 0.92657 1.70948 1.14522 1.50028 1.27448 0.82611 0.71576 0.75031 0.75509 1.19472 1.22759 1.22333 0.91671 0.92104 0.93406 0.91874 0.94229 0.89792 0.94092 0.88528 0.85783 0.91519 0.87777 0.87609 0.92633 0.85836 0.95187 0.86318 0.87928 0.85885 0.93393 0.91021 0.89924 0.80925 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.67 71.98 0.70 -3.12 16 2 C -0.10 -3.32 5.19 30.60 0.16 -3.16 16 3 C -0.09 -2.80 2.14 -10.72 -0.02 -2.83 16 4 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 5 C 0.13 4.20 5.04 86.36 0.43 4.63 16 6 N -0.60 -18.00 2.96 -818.90 -2.42 -20.43 16 7 C 0.52 15.45 4.85 87.66 0.43 15.88 16 8 O -0.57 -20.22 13.07 -3.04 -0.04 -20.26 16 9 C -0.11 -2.33 0.36 -52.81 -0.02 -2.35 16 10 C 0.05 0.97 5.96 71.98 0.43 1.40 16 11 F -0.23 -6.86 16.69 44.97 0.75 -6.11 16 12 C -0.12 -2.59 4.49 30.74 0.14 -2.45 16 13 C 0.05 1.12 6.56 72.07 0.47 1.59 16 14 O -0.39 -8.69 10.77 -148.98 -1.60 -10.29 16 15 C 0.06 1.09 6.61 72.01 0.48 1.57 16 16 C -0.15 -2.33 4.62 30.68 0.14 -2.19 16 17 C 0.10 2.76 3.78 86.36 0.33 3.08 16 18 C -0.14 -4.03 5.65 30.67 0.17 -3.85 16 19 C 0.18 6.20 2.53 45.01 0.11 6.32 16 20 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 21 N -0.74 -33.27 3.72 -322.83 -1.20 -34.47 16 22 C -0.31 -16.12 9.93 84.03 0.83 -15.28 16 23 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 24 C -0.10 -5.75 5.50 84.86 0.47 -5.28 16 25 N -0.98 -59.83 13.70 21.65 0.30 -59.53 16 26 Si 1.13 50.54 29.92 68.60 2.05 52.59 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.30 6.70 -2.39 -0.02 1.29 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.51 7.70 -2.39 -0.02 1.49 16 35 H 0.08 2.88 5.72 -2.39 -0.01 2.87 16 36 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 37 H 0.10 1.97 4.56 -2.39 -0.01 1.96 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.63 7.99 -2.39 -0.02 1.62 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.59 5.58 -2.38 -0.01 1.58 16 43 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.03 0.68 7.38 -2.39 -0.02 0.67 16 45 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 1.47 4.95 -2.39 -0.01 1.45 16 47 H 0.12 2.51 2.47 -2.39 -0.01 2.51 16 48 H 0.05 1.71 7.69 -2.39 -0.02 1.70 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.36 17.65 4.78 -92.71 -0.44 17.21 16 52 H 0.24 14.81 6.77 -92.71 -0.63 14.18 16 Total: -1.00 -69.55 379.42 3.71 -65.84 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.63 Total: 38.70 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.25 Total: -6.03 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.33 Total: -114.43 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.64 Total: -30.55 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.75 Total: -6.11 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -69.55 3.71 -65.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037936343.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.636 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds