Wall clock time and date at job start Wed Apr 1 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.47017 * 2 1 4 4 H 1.08994 * 109.49982 * 55.06695 * 3 2 1 5 5 C 1.53194 * 109.49838 * 294.99907 * 3 2 1 6 6 N 1.46928 * 108.77539 * 185.38195 * 5 3 2 7 7 C 1.34777 * 120.63124 * 233.58635 * 6 5 3 8 8 O 1.21277 * 120.00095 * 354.63904 * 7 6 5 9 9 C 1.50705 * 119.99757 * 174.63557 * 7 6 5 10 10 C 1.53001 * 109.54214 * 62.23549 * 9 7 6 11 11 F 1.39905 * 109.46947 * 185.98967 * 10 9 7 12 12 C 1.53167 * 109.54470 * 301.96458 * 9 7 6 13 13 C 1.53096 * 109.16353 * 297.11499 * 12 9 7 14 14 O 1.42901 * 109.41525 * 302.38943 * 13 12 9 15 15 C 1.42904 * 114.09631 * 61.15820 * 14 13 12 16 16 C 1.53100 * 109.41477 * 298.84256 * 15 14 13 17 17 C 1.46933 * 118.73736 * 53.61442 * 6 5 3 18 18 C 1.53189 * 108.77259 * 306.38625 * 17 6 5 19 19 C 1.53040 * 109.31097 * 54.63979 * 18 17 6 20 20 H 1.08998 * 109.46464 * 58.65297 * 19 18 17 21 21 N 1.46504 * 109.46125 * 178.61635 * 19 18 17 22 22 C 1.36942 * 119.99545 * 274.99863 * 21 19 18 23 23 H 1.08002 * 120.00147 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99778 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00483 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99966 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47173 * 89.99568 * 26 24 22 28 28 H 1.48504 * 109.47161 * 210.00030 * 26 24 22 29 29 H 1.48500 * 109.46959 * 329.99676 * 26 24 22 30 30 H 1.09000 * 109.46586 * 300.00058 * 1 2 3 31 31 H 1.08998 * 109.47153 * 59.99885 * 1 2 3 32 32 H 1.08995 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46586 * 239.99941 * 2 1 3 34 34 H 1.08998 * 109.47153 * 120.00115 * 2 1 3 35 35 H 1.09003 * 109.58611 * 65.59762 * 5 3 2 36 36 H 1.08998 * 109.58778 * 305.17105 * 5 3 2 37 37 H 1.09005 * 109.46882 * 305.98577 * 10 9 7 38 38 H 1.08995 * 109.47544 * 65.98919 * 10 9 7 39 39 H 1.09000 * 109.52722 * 57.01956 * 12 9 7 40 40 H 1.08996 * 109.52538 * 177.21024 * 12 9 7 41 41 H 1.08998 * 109.47705 * 182.40818 * 13 12 9 42 42 H 1.08999 * 109.47900 * 62.37802 * 13 12 9 43 43 H 1.08997 * 109.48158 * 178.85977 * 15 14 13 44 44 H 1.09001 * 109.48846 * 58.82810 * 15 14 13 45 45 H 1.08997 * 109.52039 * 297.70081 * 16 15 14 46 46 H 1.08997 * 109.56911 * 177.54518 * 16 15 14 47 47 H 1.08999 * 109.58566 * 186.60312 * 17 6 5 48 48 H 1.09000 * 109.58713 * 66.17200 * 17 6 5 49 49 H 1.09003 * 109.49465 * 174.58618 * 18 17 6 50 50 H 1.08996 * 109.49983 * 294.68671 * 18 17 6 51 51 H 0.97000 * 120.00647 * 94.99259 * 21 19 18 52 52 H 0.96995 * 120.00447 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1279 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4806 4.5579 -1.5634 8 8 0.3021 4.4349 -1.8218 9 6 2.0949 5.9316 -1.4820 10 6 3.1773 6.0726 -2.5541 11 9 3.8392 7.2943 -2.3906 12 6 2.7144 6.1345 -0.0959 13 6 1.6103 6.0685 0.9626 14 8 0.6203 7.0592 0.6787 15 6 -0.0267 6.8923 -0.5845 16 6 1.0116 6.9913 -1.7051 17 6 3.6916 3.5908 -1.1516 18 6 4.0735 2.8889 0.1554 19 6 3.5657 1.4456 0.1219 20 1 3.9994 0.9277 -0.7335 21 7 3.9578 0.7614 1.3566 22 6 5.1960 0.1849 1.4562 23 1 5.8832 0.2343 0.6245 24 6 5.5678 -0.4629 2.6262 25 7 4.7306 -0.5227 3.6400 26 14 7.2571 -1.2487 2.7624 27 1 8.2229 -0.2562 3.2985 28 1 7.1876 -2.4162 3.6775 29 1 7.7035 -1.6984 1.4193 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5496 2.2168 -1.3541 36 1 1.9913 1.5400 -2.1547 37 1 3.8928 5.2559 -2.4576 38 1 2.7173 6.0379 -3.5416 39 1 3.4479 5.3509 0.0936 40 1 3.2016 7.1086 -0.0537 41 1 2.0391 6.2549 1.9472 42 1 1.1506 5.0803 0.9472 43 1 -0.7772 7.6720 -0.7143 44 1 -0.5080 5.9149 -0.6202 45 1 1.4644 7.9828 -1.6955 46 1 0.5280 6.8211 -2.6670 47 1 3.9630 4.6448 -1.0931 48 1 4.2154 3.1220 -1.9846 49 1 5.1579 2.8905 0.2658 50 1 3.6209 3.4144 0.9963 51 1 3.3406 0.7168 2.1035 52 1 4.9906 -0.9750 4.4577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037936344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:10 Heat of formation + Delta-G solvation = -114.542374 kcal Electronic energy + Delta-G solvation = -33340.713967 eV Core-core repulsion = 29062.012995 eV Total energy + Delta-G solvation = -4278.700972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -47.98139 -41.31806 -38.90185 -37.64757 -35.47024 -34.38899 -33.69785 -31.83276 -31.25057 -29.66741 -29.04561 -28.02310 -25.52280 -24.28283 -23.67622 -23.62884 -22.78960 -21.45849 -20.90657 -19.75396 -18.85828 -17.20737 -17.03192 -16.78161 -16.48830 -16.17764 -15.78231 -15.68175 -15.41857 -15.00814 -14.69417 -14.49948 -14.15241 -13.90983 -13.73318 -13.62066 -13.42786 -13.35864 -13.14248 -12.85448 -12.54815 -12.48749 -12.11929 -11.94469 -11.83029 -11.69516 -11.50483 -11.36255 -11.29098 -11.00725 -10.92287 -10.79597 -10.62700 -10.48907 -10.43100 -10.28274 -10.21189 -9.87934 -9.69365 -9.67552 -9.44991 -8.96612 -8.61785 -7.03941 -5.84014 -3.13281 2.39265 2.87058 3.37757 3.43401 3.45157 3.79192 4.01468 4.11326 4.16925 4.50480 4.52884 4.64740 4.74363 4.87197 4.91812 5.06240 5.11698 5.13345 5.19629 5.21762 5.29442 5.36097 5.39063 5.47229 5.51141 5.53888 5.57338 5.59139 5.60584 5.64871 5.78897 5.79697 5.87599 5.93933 5.99526 6.03029 6.07183 6.20636 6.26229 6.30386 6.37131 6.44550 6.56920 6.72639 6.87026 6.94966 7.12021 7.32538 7.62212 8.01927 8.33847 9.45693 10.02012 10.36729 11.38187 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003545 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.485345 B = 7895.668104 C = 8646.440411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.526 3.474 8 O -0.537 6.537 9 C -0.110 4.110 10 C 0.060 3.940 11 F -0.206 7.206 12 C -0.162 4.162 13 C 0.063 3.937 14 O -0.383 6.383 15 C 0.052 3.948 16 C -0.128 4.128 17 C 0.079 3.921 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 12.430 -12.303 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.332 5.332 7 C 0.313 3.687 8 O -0.414 6.414 9 C -0.114 4.114 10 C 0.005 3.995 11 F -0.187 7.187 12 C -0.199 4.199 13 C -0.014 4.014 14 O -0.302 6.302 15 C -0.024 4.024 16 C -0.166 4.166 17 C -0.044 4.044 18 C -0.194 4.194 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.359 5.359 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.578 5.578 26 Si 0.735 3.265 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.979 12.421 -12.320 18.835 hybrid contribution 1.074 -0.639 0.227 1.270 sum -5.906 11.782 -12.093 17.887 Atomic orbital electron populations 1.21845 0.96790 1.01118 1.01252 1.21449 0.94374 0.95610 1.03539 1.21783 0.97690 0.96339 0.96581 0.91241 1.21803 0.99384 0.81205 0.97997 1.48155 1.08354 1.06745 1.69929 1.20103 0.86544 0.85397 0.76624 1.90640 1.15869 1.86411 1.48489 1.21471 0.97568 0.94401 0.97952 1.22400 0.94188 0.83884 0.99039 1.92779 1.82258 1.46784 1.96919 1.22643 0.99713 1.05180 0.92355 1.22537 0.88413 0.92142 0.98328 1.87909 1.53875 1.51797 1.36576 1.22771 0.94072 1.03305 0.82284 1.22024 0.96040 0.97715 1.00812 1.22553 0.79738 1.02123 0.99940 1.22741 1.02455 0.99487 0.94760 1.20166 0.90703 0.90380 0.91365 0.93391 1.42401 1.16536 1.64364 1.12643 1.19193 0.91811 1.27572 0.98625 0.91256 1.24717 0.98082 1.01400 0.96406 1.69650 1.35254 1.48265 1.04677 0.86245 0.84143 0.78788 0.77309 1.21748 1.21813 1.20797 0.93002 0.93262 0.93111 0.92433 0.89722 0.89111 0.91511 0.88686 0.90091 0.88288 0.89146 0.88197 0.93059 0.89024 0.90762 0.90068 0.90037 0.88669 0.91034 0.90322 0.91941 0.78169 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.10 -1.56 1.92 -90.50 -0.17 -1.73 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.55 5.31 -3.71 -0.02 1.53 16 6 N -0.60 -7.38 2.97 -172.76 -0.51 -7.89 16 7 C 0.53 6.71 5.12 -10.98 -0.06 6.65 16 8 O -0.54 -8.17 13.37 5.56 0.07 -8.10 16 9 C -0.11 -1.19 0.36 -155.48 -0.06 -1.24 16 10 C 0.06 0.55 6.02 37.16 0.22 0.77 16 11 F -0.21 -2.19 16.23 2.25 0.04 -2.15 16 12 C -0.16 -1.76 4.45 -26.60 -0.12 -1.87 16 13 C 0.06 0.77 6.62 37.21 0.25 1.01 16 14 O -0.38 -5.09 10.77 -35.23 -0.38 -5.47 16 15 C 0.05 0.62 6.55 37.21 0.24 0.86 16 16 C -0.13 -1.36 4.50 -26.59 -0.12 -1.48 16 17 C 0.08 0.89 4.09 -3.71 -0.02 0.88 16 18 C -0.15 -2.27 5.32 -26.61 -0.14 -2.41 16 19 C 0.18 3.18 2.19 -67.88 -0.15 3.03 16 20 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 21 N -0.72 -16.21 4.33 -53.38 -0.23 -16.44 16 22 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 26 Si 0.90 21.42 29.55 -169.99 -5.02 16.39 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.56 7.22 -51.93 -0.38 1.19 16 35 H 0.09 1.26 5.76 -51.93 -0.30 0.96 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.78 4.72 -51.93 -0.25 0.54 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.06 4.00 -51.93 -0.21 0.85 16 40 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.70 7.38 -51.93 -0.38 0.31 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.01 5.89 -51.93 -0.31 0.71 16 45 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 46 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 47 H 0.10 0.93 2.63 -51.93 -0.14 0.80 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.06 0.97 7.61 -51.93 -0.39 0.58 16 51 H 0.38 9.45 7.51 -40.82 -0.31 9.15 16 52 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -29.33 382.98 -8.12 -37.45 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.41 Total: 10.66 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.16 Total: -4.16 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.02 Total: -50.39 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.30 Total: -13.57 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.33 -8.12 -37.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037936344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.097 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds