Wall clock time and date at job start Wed Apr 1 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.47017 * 2 1 4 4 H 1.08994 * 109.49982 * 55.06695 * 3 2 1 5 5 C 1.53194 * 109.49838 * 294.99907 * 3 2 1 6 6 N 1.46928 * 108.77539 * 185.38195 * 5 3 2 7 7 C 1.34777 * 120.63124 * 233.58635 * 6 5 3 8 8 O 1.21277 * 120.00095 * 354.63904 * 7 6 5 9 9 C 1.50705 * 119.99757 * 174.63557 * 7 6 5 10 10 C 1.53001 * 109.54214 * 62.23549 * 9 7 6 11 11 F 1.39905 * 109.46947 * 185.98967 * 10 9 7 12 12 C 1.53167 * 109.54470 * 301.96458 * 9 7 6 13 13 C 1.53096 * 109.16353 * 297.11499 * 12 9 7 14 14 O 1.42901 * 109.41525 * 302.38943 * 13 12 9 15 15 C 1.42904 * 114.09631 * 61.15820 * 14 13 12 16 16 C 1.53100 * 109.41477 * 298.84256 * 15 14 13 17 17 C 1.46933 * 118.73736 * 53.61442 * 6 5 3 18 18 C 1.53189 * 108.77259 * 306.38625 * 17 6 5 19 19 C 1.53040 * 109.31097 * 54.63979 * 18 17 6 20 20 H 1.08998 * 109.46464 * 58.65297 * 19 18 17 21 21 N 1.46504 * 109.46125 * 178.61635 * 19 18 17 22 22 C 1.36942 * 119.99545 * 274.99863 * 21 19 18 23 23 H 1.08002 * 120.00147 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99778 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00483 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99966 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47173 * 89.99568 * 26 24 22 28 28 H 1.48504 * 109.47161 * 210.00030 * 26 24 22 29 29 H 1.48500 * 109.46959 * 329.99676 * 26 24 22 30 30 H 1.09000 * 109.46586 * 300.00058 * 1 2 3 31 31 H 1.08998 * 109.47153 * 59.99885 * 1 2 3 32 32 H 1.08995 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46586 * 239.99941 * 2 1 3 34 34 H 1.08998 * 109.47153 * 120.00115 * 2 1 3 35 35 H 1.09003 * 109.58611 * 65.59762 * 5 3 2 36 36 H 1.08998 * 109.58778 * 305.17105 * 5 3 2 37 37 H 1.09005 * 109.46882 * 305.98577 * 10 9 7 38 38 H 1.08995 * 109.47544 * 65.98919 * 10 9 7 39 39 H 1.09000 * 109.52722 * 57.01956 * 12 9 7 40 40 H 1.08996 * 109.52538 * 177.21024 * 12 9 7 41 41 H 1.08998 * 109.47705 * 182.40818 * 13 12 9 42 42 H 1.08999 * 109.47900 * 62.37802 * 13 12 9 43 43 H 1.08997 * 109.48158 * 178.85977 * 15 14 13 44 44 H 1.09001 * 109.48846 * 58.82810 * 15 14 13 45 45 H 1.08997 * 109.52039 * 297.70081 * 16 15 14 46 46 H 1.08997 * 109.56911 * 177.54518 * 16 15 14 47 47 H 1.08999 * 109.58566 * 186.60312 * 17 6 5 48 48 H 1.09000 * 109.58713 * 66.17200 * 17 6 5 49 49 H 1.09003 * 109.49465 * 174.58618 * 18 17 6 50 50 H 1.08996 * 109.49983 * 294.68671 * 18 17 6 51 51 H 0.97000 * 120.00647 * 94.99259 * 21 19 18 52 52 H 0.96995 * 120.00447 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1279 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4806 4.5579 -1.5634 8 8 0.3021 4.4349 -1.8218 9 6 2.0949 5.9316 -1.4820 10 6 3.1773 6.0726 -2.5541 11 9 3.8392 7.2943 -2.3906 12 6 2.7144 6.1345 -0.0959 13 6 1.6103 6.0685 0.9626 14 8 0.6203 7.0592 0.6787 15 6 -0.0267 6.8923 -0.5845 16 6 1.0116 6.9913 -1.7051 17 6 3.6916 3.5908 -1.1516 18 6 4.0735 2.8889 0.1554 19 6 3.5657 1.4456 0.1219 20 1 3.9994 0.9277 -0.7335 21 7 3.9578 0.7614 1.3566 22 6 5.1960 0.1849 1.4562 23 1 5.8832 0.2343 0.6245 24 6 5.5678 -0.4629 2.6262 25 7 4.7306 -0.5227 3.6400 26 14 7.2571 -1.2487 2.7624 27 1 8.2229 -0.2562 3.2985 28 1 7.1876 -2.4162 3.6775 29 1 7.7035 -1.6984 1.4193 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5496 2.2168 -1.3541 36 1 1.9913 1.5400 -2.1547 37 1 3.8928 5.2559 -2.4576 38 1 2.7173 6.0379 -3.5416 39 1 3.4479 5.3509 0.0936 40 1 3.2016 7.1086 -0.0537 41 1 2.0391 6.2549 1.9472 42 1 1.1506 5.0803 0.9472 43 1 -0.7772 7.6720 -0.7143 44 1 -0.5080 5.9149 -0.6202 45 1 1.4644 7.9828 -1.6955 46 1 0.5280 6.8211 -2.6670 47 1 3.9630 4.6448 -1.0931 48 1 4.2154 3.1220 -1.9846 49 1 5.1579 2.8905 0.2658 50 1 3.6209 3.4144 0.9963 51 1 3.3406 0.7168 2.1035 52 1 4.9906 -0.9750 4.4577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037936344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:09 Heat of formation + Delta-G solvation = -131.955057 kcal Electronic energy + Delta-G solvation = -33341.469038 eV Core-core repulsion = 29062.012995 eV Total energy + Delta-G solvation = -4279.456043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.73886 -42.31656 -40.02002 -38.79167 -36.60440 -35.78560 -34.91364 -33.46376 -32.17250 -31.13281 -30.22248 -28.97090 -26.90694 -25.37134 -25.08814 -24.63099 -23.90278 -22.57696 -22.13911 -21.01698 -19.91222 -19.03913 -18.01758 -17.70016 -17.38403 -17.14253 -16.82727 -16.70732 -16.54506 -16.27771 -15.72373 -15.71881 -15.49990 -15.31519 -14.88740 -14.70129 -14.65603 -14.48686 -14.35159 -14.00504 -13.73135 -13.57077 -13.28624 -13.05062 -12.96512 -12.83626 -12.73582 -12.62314 -12.55622 -12.27373 -12.23825 -12.16380 -12.03721 -11.83673 -11.61375 -11.55937 -11.45936 -11.36446 -11.09331 -10.91285 -10.63243 -10.43552 -9.70652 -8.93838 -7.89323 -5.16413 1.39608 1.50161 1.50389 1.58307 1.86501 2.59299 2.85979 3.11580 3.26026 3.34437 3.44307 3.66191 3.74533 3.81037 3.86164 3.89649 3.97815 4.09930 4.13366 4.17628 4.20841 4.32266 4.34091 4.40433 4.44387 4.45737 4.52662 4.63548 4.66973 4.69396 4.73035 4.77297 4.79505 4.80786 4.86531 4.95582 4.98811 5.03564 5.06006 5.11406 5.16842 5.28821 5.36189 5.45988 5.52898 5.59263 5.65661 6.16092 6.30269 6.32649 7.00830 7.39158 8.15556 8.37915 9.34103 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003545 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.485345 B = 7895.668104 C = 8646.440411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.051 0.949 5 C 0.126 3.874 6 N -0.599 5.599 7 C 0.527 3.473 8 O -0.561 6.561 9 C -0.108 4.108 10 C 0.061 3.939 11 F -0.212 7.212 12 C -0.156 4.156 13 C 0.060 3.940 14 O -0.396 6.396 15 C 0.049 3.951 16 C -0.124 4.124 17 C 0.087 3.913 18 C -0.144 4.144 19 C 0.179 3.821 20 H 0.049 0.951 21 N -0.730 5.730 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.074 4.074 25 N -0.970 5.970 26 Si 0.963 3.037 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.269 1.269 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.031 0.969 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.095 0.905 49 H 0.070 0.930 50 H 0.050 0.950 51 H 0.370 0.630 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.739 13.677 -14.889 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.331 5.331 7 C 0.316 3.684 8 O -0.440 6.440 9 C -0.112 4.112 10 C 0.007 3.993 11 F -0.193 7.193 12 C -0.193 4.193 13 C -0.017 4.017 14 O -0.316 6.316 15 C -0.027 4.027 16 C -0.162 4.162 17 C -0.035 4.035 18 C -0.185 4.185 19 C 0.071 3.929 20 H 0.067 0.933 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.266 4.266 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.218 1.218 28 H -0.230 1.230 29 H -0.194 1.194 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.050 0.950 43 H 0.126 0.874 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.134 0.866 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.069 0.931 51 H 0.202 0.798 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.206 13.699 -14.968 21.218 hybrid contribution 0.751 -0.997 1.002 1.600 sum -5.456 12.702 -13.966 19.651 Atomic orbital electron populations 1.21777 0.95037 1.01852 1.01624 1.21353 0.95907 0.95333 1.01948 1.21621 0.95927 0.96340 0.97303 0.93082 1.21671 0.99288 0.81717 0.96992 1.48168 1.08735 1.06423 1.69746 1.20412 0.86163 0.86000 0.75857 1.90638 1.16995 1.86801 1.49598 1.21483 0.98191 0.93050 0.98479 1.22469 0.93863 0.83910 0.99065 1.92774 1.82314 1.47291 1.96950 1.22597 0.99080 1.05667 0.91976 1.22568 0.88674 0.91012 0.99422 1.87891 1.54243 1.51939 1.37484 1.22841 0.94785 1.02780 0.82310 1.22009 0.95669 0.98071 1.00464 1.22591 0.79204 1.03190 0.98523 1.22519 1.01633 0.97741 0.96612 1.20410 0.92205 0.91276 0.89008 0.93309 1.42579 1.15465 1.64922 1.13920 1.19580 0.92596 1.25569 0.98234 0.90370 1.25422 1.01276 1.03254 0.96635 1.69809 1.37032 1.50198 1.05104 0.85281 0.80532 0.77403 0.77399 1.21759 1.23003 1.19361 0.93763 0.91688 0.92241 0.91641 0.93551 0.89508 0.89779 0.87387 0.88399 0.88065 0.88337 0.87579 0.95026 0.87399 0.92847 0.89165 0.89362 0.86588 0.88661 0.91133 0.93127 0.79817 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.67 71.99 0.70 -3.05 16 2 C -0.11 -3.27 5.31 30.60 0.16 -3.10 16 3 C -0.09 -2.73 1.92 -10.71 -0.02 -2.75 16 4 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 5 C 0.13 3.08 5.31 86.36 0.46 3.54 16 6 N -0.60 -13.43 2.97 -818.88 -2.43 -15.85 16 7 C 0.53 12.39 5.12 87.66 0.45 12.84 16 8 O -0.56 -16.31 13.37 -3.02 -0.04 -16.35 16 9 C -0.11 -2.07 0.36 -52.81 -0.02 -2.08 16 10 C 0.06 0.91 6.02 71.98 0.43 1.34 16 11 F -0.21 -3.76 16.23 44.97 0.73 -3.03 16 12 C -0.16 -3.09 4.45 30.68 0.14 -2.95 16 13 C 0.06 1.44 6.62 72.01 0.48 1.91 16 14 O -0.40 -10.25 10.77 -148.98 -1.60 -11.86 16 15 C 0.05 1.11 6.55 72.02 0.47 1.58 16 16 C -0.12 -2.37 4.50 30.69 0.14 -2.24 16 17 C 0.09 1.71 4.09 86.36 0.35 2.07 16 18 C -0.14 -4.09 5.32 30.67 0.16 -3.92 16 19 C 0.18 6.09 2.19 45.02 0.10 6.19 16 20 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 21 N -0.73 -33.43 4.33 -322.79 -1.40 -34.83 16 22 C -0.23 -11.66 9.93 84.03 0.83 -10.83 16 23 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 25 N -0.97 -57.59 13.06 21.65 0.28 -57.30 16 26 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.47 6.70 -2.39 -0.02 1.45 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16 35 H 0.09 2.26 5.76 -2.39 -0.01 2.25 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 1.31 4.72 -2.38 -0.01 1.29 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.94 4.00 -2.39 -0.01 1.93 16 40 H 0.10 1.84 7.58 -2.39 -0.02 1.83 16 41 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.03 0.87 7.38 -2.39 -0.02 0.85 16 43 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.05 1.44 5.89 -2.39 -0.01 1.43 16 45 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 46 H 0.09 1.58 8.00 -2.39 -0.02 1.56 16 47 H 0.12 1.88 2.63 -2.39 -0.01 1.87 16 48 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.05 1.56 7.61 -2.39 -0.02 1.54 16 51 H 0.37 18.95 7.51 -92.71 -0.70 18.25 16 52 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -64.33 382.98 3.10 -61.23 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.24 Total: 36.59 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.30 Total: -5.03 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.54 Total: -107.99 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.64 Total: -28.21 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.73 Total: -3.03 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.33 3.10 -61.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037936344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.728 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds