Wall clock time and date at job start Wed Apr 1 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 H 1.09003 * 109.52274 * 305.07985 * 3 2 1 5 5 C 1.53191 * 109.49769 * 65.16378 * 3 2 1 6 6 N 1.46922 * 108.77517 * 174.58897 * 5 3 2 7 7 C 1.34781 * 120.63264 * 126.36624 * 6 5 3 8 8 O 1.21283 * 119.99821 * 355.67857 * 7 6 5 9 9 C 1.50702 * 119.99786 * 175.67323 * 7 6 5 10 10 C 1.50702 * 115.55016 * 280.59417 * 9 7 6 11 11 C 1.38240 * 119.99595 * 150.18415 * 10 9 7 12 12 C 1.38237 * 120.00012 * 179.79115 * 11 10 9 13 13 C 1.38239 * 119.99506 * 0.44464 * 12 11 10 14 14 C 1.38232 * 120.00148 * 359.81077 * 13 12 11 15 15 C 1.38230 * 120.00274 * 359.97438 * 14 13 12 16 16 C 1.52998 * 117.49544 * 134.89345 * 9 7 6 17 17 C 1.52989 * 117.49719 * 66.27357 * 9 7 6 18 18 C 1.46926 * 118.73842 * 306.38572 * 6 5 3 19 19 C 1.53194 * 108.77338 * 53.60859 * 18 6 5 20 20 C 1.53036 * 109.49591 * 184.99980 * 3 2 1 21 21 H 1.09002 * 109.45450 * 58.67172 * 20 3 2 22 22 N 1.46502 * 109.46412 * 298.70307 * 20 3 2 23 23 C 1.36935 * 120.00565 * 154.93550 * 22 20 3 24 24 H 1.08003 * 119.99835 * 359.97438 * 23 22 20 25 25 C 1.38806 * 120.00223 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00187 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99820 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47255 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46987 * 239.99335 * 27 25 23 30 30 H 1.48505 * 109.47065 * 119.99553 * 27 25 23 31 31 H 1.08999 * 109.46625 * 300.00148 * 1 2 3 32 32 H 1.09000 * 109.46800 * 59.99767 * 1 2 3 33 33 H 1.08994 * 109.47382 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47141 * 239.99754 * 2 1 3 35 35 H 1.09005 * 109.47218 * 120.00148 * 2 1 3 36 36 H 1.09000 * 109.59072 * 54.79828 * 5 3 2 37 37 H 1.09004 * 109.70004 * 294.44503 * 5 3 2 38 38 H 1.08005 * 119.99741 * 0.02562 * 11 10 9 39 39 H 1.07995 * 120.00340 * 180.27720 * 12 11 10 40 40 H 1.08001 * 119.99348 * 179.83213 * 13 12 11 41 41 H 1.08003 * 120.00065 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.00120 * 179.97438 * 15 14 13 43 43 H 1.09006 * 117.49749 * 0.02562 * 16 9 7 44 44 H 1.08999 * 117.49958 * 145.02032 * 16 9 7 45 45 H 1.09005 * 117.49565 * 214.97733 * 17 9 7 46 46 H 1.08999 * 117.50401 * 359.97438 * 17 9 7 47 47 H 1.09005 * 109.58666 * 293.82698 * 18 6 5 48 48 H 1.09003 * 109.58579 * 173.39506 * 18 6 5 49 49 H 1.09003 * 109.49784 * 185.40835 * 19 18 6 50 50 H 1.09003 * 109.49206 * 65.31996 * 19 18 6 51 51 H 0.97004 * 119.99769 * 334.93406 * 22 20 3 52 52 H 0.96999 * 119.99607 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6387 2.1268 1.3105 6 7 2.2452 3.4643 1.3507 7 6 1.4858 4.5566 1.5672 8 8 0.2807 4.4499 1.6530 9 6 2.1341 5.9102 1.7028 10 6 2.7486 6.2049 3.0469 11 6 3.8402 7.0482 3.1378 12 6 4.4013 7.3220 4.3711 13 6 3.8765 6.7452 5.5125 14 6 2.7882 5.8978 5.4210 15 6 2.2244 5.6275 4.1882 16 6 1.4976 7.0773 0.9454 17 6 2.8264 6.4888 0.4672 18 6 3.6954 3.5887 1.1499 19 6 4.0738 2.8880 -0.1588 20 6 3.5653 1.4450 -0.1257 21 1 3.8545 0.9369 -1.0457 22 7 4.1508 0.7474 1.0218 23 6 5.3880 0.1705 0.9141 24 1 5.9320 0.2294 -0.0171 25 6 5.9425 -0.4908 2.0012 26 7 5.2793 -0.5630 3.1359 27 14 7.6300 -1.2784 1.8539 28 1 8.1612 -1.0582 0.4849 29 1 7.5200 -2.7365 2.1133 30 1 8.5499 -0.6671 2.8466 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.9966 1.5377 2.1549 37 1 0.5535 2.2160 1.3611 38 1 4.2523 7.4961 2.2456 39 1 5.2513 7.9843 4.4427 40 1 4.3166 6.9570 6.4758 41 1 2.3784 5.4468 6.3127 42 1 1.3743 4.9651 4.1167 43 1 0.6097 6.8660 0.3494 44 1 1.5232 8.0586 1.4192 45 1 3.7263 7.0829 0.6265 46 1 2.8134 5.8902 -0.4436 47 1 4.2210 3.1188 1.9812 48 1 3.9671 4.6428 1.0918 49 1 5.1579 2.8893 -0.2719 50 1 3.6194 3.4147 -0.9980 51 1 3.6620 0.6943 1.8580 52 1 4.4030 -0.1543 3.2122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037966860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:37 Heat of formation + Delta-G solvation = 9.860434 kcal Electronic energy + Delta-G solvation = -31650.642162 eV Core-core repulsion = 27808.104925 eV Total energy + Delta-G solvation = -3842.537237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.01542 -40.36749 -39.25448 -37.46710 -36.09676 -35.45966 -33.48782 -31.95291 -31.50882 -30.93231 -30.02476 -27.18865 -25.53281 -25.20490 -24.94607 -23.84928 -23.23377 -22.55603 -22.16729 -20.62967 -19.68895 -19.18835 -18.57043 -17.77751 -17.21284 -16.88038 -16.44272 -16.12165 -15.87283 -15.77836 -15.53115 -15.39552 -15.11591 -14.93894 -14.80196 -14.47897 -14.38049 -14.08446 -13.86644 -13.78968 -13.55851 -13.23039 -13.09397 -12.73414 -12.63212 -12.58643 -12.33748 -12.27495 -12.21107 -12.02157 -11.87264 -11.79066 -11.69530 -11.61370 -11.57154 -11.45330 -11.07320 -10.91135 -10.68383 -9.89117 -9.71210 -9.56957 -9.02262 -8.30532 -5.23453 0.32858 0.43138 1.42242 1.59778 1.70335 1.81188 1.85020 2.54464 2.74465 2.98496 3.31290 3.41877 3.47437 3.68454 3.69479 3.79710 3.86198 3.90974 3.96098 4.04495 4.09733 4.19901 4.22311 4.25062 4.30838 4.35045 4.45723 4.49804 4.55096 4.62014 4.66650 4.71000 4.73026 4.80667 4.88043 4.90981 4.95540 5.02790 5.05918 5.07201 5.12361 5.13831 5.14657 5.21025 5.29660 5.40700 5.51379 5.55712 5.57040 5.59015 5.69746 6.04067 6.34557 6.55529 7.01967 7.16029 8.07219 8.20251 9.20739 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.004305 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.660990 B = 6502.060196 C = 8171.371917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.087 0.913 5 C 0.124 3.876 6 N -0.592 5.592 7 C 0.552 3.448 8 O -0.581 6.581 9 C -0.139 4.139 10 C -0.045 4.045 11 C -0.119 4.119 12 C -0.115 4.115 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.137 4.137 16 C -0.126 4.126 17 C -0.142 4.142 18 C 0.127 3.873 19 C -0.140 4.140 20 C 0.177 3.823 21 H 0.046 0.954 22 N -0.736 5.736 23 C -0.312 4.312 24 H 0.067 0.933 25 C -0.105 4.105 26 N -0.980 5.980 27 Si 1.126 2.874 28 H -0.270 1.270 29 H -0.298 1.298 30 H -0.296 1.296 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.107 0.893 47 H 0.038 0.962 48 H 0.105 0.895 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.357 0.643 52 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 18.083 -4.998 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.105 0.895 5 C 0.001 3.999 6 N -0.322 5.322 7 C 0.341 3.659 8 O -0.462 6.462 9 C -0.142 4.142 10 C -0.046 4.046 11 C -0.136 4.136 12 C -0.132 4.132 13 C -0.145 4.145 14 C -0.145 4.145 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.178 4.178 18 C 0.004 3.996 19 C -0.181 4.181 20 C 0.069 3.931 21 H 0.064 0.936 22 N -0.378 5.378 23 C -0.444 4.444 24 H 0.085 0.915 25 C -0.296 4.296 26 N -0.629 5.629 27 Si 0.953 3.047 28 H -0.195 1.195 29 H -0.225 1.225 30 H -0.223 1.223 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.154 0.846 46 H 0.125 0.875 47 H 0.056 0.944 48 H 0.123 0.877 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.191 0.809 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.495 17.151 -4.393 18.046 hybrid contribution -1.574 -0.006 0.068 1.575 sum -5.069 17.144 -4.325 18.394 Atomic orbital electron populations 1.21780 0.94544 1.02048 1.01898 1.21335 0.96237 0.95117 1.01578 1.21661 0.95853 0.96450 0.97098 0.89463 1.21518 0.98656 0.82148 0.97571 1.48067 1.08930 1.05972 1.69280 1.19868 0.85934 0.85374 0.74731 1.90629 1.15769 1.86775 1.53020 1.19996 1.07971 0.92463 0.93807 1.18764 0.96356 0.98404 0.91042 1.21294 0.94768 0.98081 0.99462 1.21520 1.00200 0.99662 0.91856 1.21501 0.95961 0.96853 1.00211 1.21321 0.97237 0.98804 0.97157 1.20990 1.00183 1.00588 0.93740 1.23171 0.97208 0.95764 1.00199 1.23443 0.97827 1.02005 0.94532 1.21613 0.78330 1.01824 0.97795 1.22388 1.01430 0.97579 0.96660 1.20384 0.90847 0.91484 0.90394 0.93558 1.42591 1.18680 1.65466 1.11091 1.20364 0.95434 1.29492 0.99121 0.91489 1.26917 1.08427 1.01630 0.92614 1.70942 1.14595 1.50002 1.27402 0.82606 0.71482 0.75087 0.75508 1.19506 1.22545 1.22313 0.93390 0.91613 0.91997 0.91791 0.94193 0.94055 0.89643 0.82963 0.82808 0.83743 0.85390 0.89050 0.88513 0.85896 0.84631 0.87460 0.94364 0.87723 0.91487 0.90185 0.80949 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.68 71.98 0.70 -3.19 16 2 C -0.10 -3.39 5.19 30.60 0.16 -3.23 16 3 C -0.09 -2.95 2.14 -10.72 -0.02 -2.98 16 4 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 5 C 0.12 4.37 5.04 86.36 0.43 4.80 16 6 N -0.59 -19.59 2.97 -818.89 -2.43 -22.02 16 7 C 0.55 18.08 5.69 87.66 0.50 18.58 16 8 O -0.58 -22.66 16.40 -3.04 -0.05 -22.71 16 9 C -0.14 -3.48 1.24 -53.68 -0.07 -3.55 16 10 C -0.05 -1.16 5.39 -19.86 -0.11 -1.26 16 11 C -0.12 -2.35 9.36 22.27 0.21 -2.14 16 12 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 13 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 14 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 15 C -0.14 -4.05 9.32 22.27 0.21 -3.84 16 16 C -0.13 -2.43 9.82 30.59 0.30 -2.13 16 17 C -0.14 -2.42 7.61 30.59 0.23 -2.19 16 18 C 0.13 4.08 5.95 86.36 0.51 4.59 16 19 C -0.14 -4.42 5.78 30.67 0.18 -4.25 16 20 C 0.18 6.57 2.53 45.02 0.11 6.69 16 21 H 0.05 1.77 8.08 -2.39 -0.02 1.76 16 22 N -0.74 -34.59 3.72 -322.82 -1.20 -35.79 16 23 C -0.31 -16.62 9.93 84.03 0.83 -15.79 16 24 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 25 C -0.10 -5.93 5.50 84.86 0.47 -5.47 16 26 N -0.98 -60.89 13.70 21.65 0.30 -60.59 16 27 Si 1.13 51.55 29.92 68.60 2.05 53.60 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 30 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 31 H 0.05 1.33 6.70 -2.39 -0.02 1.31 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.55 7.70 -2.38 -0.02 1.53 16 36 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 37 H 0.09 3.04 5.72 -2.38 -0.01 3.03 16 38 H 0.15 2.06 5.95 -2.91 -0.02 2.04 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.09 3.12 7.33 -2.91 -0.02 3.10 16 43 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.14 1.58 6.11 -2.38 -0.01 1.57 16 46 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.55 7.74 -2.38 -0.02 1.53 16 48 H 0.10 2.77 4.83 -2.39 -0.01 2.76 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.36 18.24 4.78 -92.70 -0.44 17.80 16 52 H 0.24 15.05 6.77 -92.71 -0.63 14.43 16 Total: -1.00 -70.56 401.95 4.60 -65.96 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: 0.62 Total: 44.28 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 5.32 Total: -22.71 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -3.34 Total: -118.41 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -70.56 4.60 -65.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.819 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds