Wall clock time and date at job start Wed Apr 1 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 H 1.09007 * 109.52144 * 54.92454 * 3 2 1 5 5 C 1.53188 * 109.50275 * 294.84082 * 3 2 1 6 6 N 1.46922 * 108.77439 * 185.41272 * 5 3 2 7 7 C 1.34782 * 120.62733 * 233.63162 * 6 5 3 8 8 O 1.21279 * 120.00143 * 355.43460 * 7 6 5 9 9 C 1.50701 * 120.00126 * 175.44151 * 7 6 5 10 10 C 1.50699 * 115.54795 * 280.10556 * 9 7 6 11 11 C 1.38230 * 120.00102 * 150.16667 * 10 9 7 12 12 C 1.38238 * 120.00240 * 179.76314 * 11 10 9 13 13 C 1.38234 * 119.99680 * 0.51246 * 12 11 10 14 14 C 1.38237 * 119.99847 * 359.74083 * 13 12 11 15 15 C 1.38232 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.52999 * 117.50313 * 134.39249 * 9 7 6 17 17 C 1.53001 * 117.49848 * 65.76799 * 9 7 6 18 18 C 1.46986 * 118.75696 * 53.60979 * 6 5 3 19 19 C 1.53185 * 108.73966 * 306.40605 * 18 6 5 20 20 C 1.53039 * 109.34070 * 54.62372 * 19 18 6 21 21 H 1.08996 * 109.45839 * 58.63760 * 20 19 18 22 22 N 1.46498 * 109.46491 * 178.59881 * 20 19 18 23 23 C 1.36938 * 119.99995 * 275.00017 * 22 20 19 24 24 H 1.07997 * 119.99963 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99886 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99353 * 179.97438 * 25 23 22 27 27 Si 1.86793 * 119.99897 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.47048 * 90.00210 * 27 25 23 29 29 H 1.48502 * 109.46921 * 209.99877 * 27 25 23 30 30 H 1.48494 * 109.47559 * 329.99887 * 27 25 23 31 31 H 1.08994 * 109.47194 * 59.99511 * 1 2 3 32 32 H 1.08997 * 109.47369 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46868 * 299.99338 * 1 2 3 34 34 H 1.09005 * 109.46868 * 240.00662 * 2 1 3 35 35 H 1.08994 * 109.47194 * 120.00489 * 2 1 3 36 36 H 1.08993 * 109.58413 * 305.20095 * 5 3 2 37 37 H 1.09000 * 109.58552 * 65.48132 * 5 3 2 38 38 H 1.08006 * 120.00277 * 359.97438 * 11 10 9 39 39 H 1.07998 * 120.00591 * 180.23138 * 12 11 10 40 40 H 1.08003 * 120.00417 * 179.72547 * 13 12 11 41 41 H 1.08000 * 120.00019 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.00132 * 179.97438 * 15 14 13 43 43 H 1.08996 * 117.49660 * 0.02562 * 16 9 7 44 44 H 1.09001 * 117.49974 * 145.01954 * 16 9 7 45 45 H 1.09003 * 117.50243 * 214.98205 * 17 9 7 46 46 H 1.09000 * 117.49918 * 0.02562 * 17 9 7 47 47 H 1.09009 * 109.62761 * 186.61530 * 18 6 5 48 48 H 1.09001 * 109.58286 * 66.17447 * 18 6 5 49 49 H 1.09001 * 109.49818 * 294.65489 * 19 18 6 50 50 H 1.09002 * 109.50052 * 174.59073 * 19 18 6 51 51 H 0.97001 * 119.99802 * 94.99850 * 22 20 19 52 52 H 0.97000 * 119.99371 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6385 2.1269 -1.3104 6 7 2.2451 3.4644 -1.3504 7 6 1.4856 4.5566 -1.5669 8 8 0.3044 4.4347 -1.8130 9 6 2.1043 5.9293 -1.5032 10 6 2.3039 6.4886 -0.1182 11 6 3.3445 7.3640 0.1303 12 6 3.5247 7.8809 1.3997 13 6 2.6706 7.5142 2.4229 14 6 1.6332 6.6347 2.1755 15 6 1.4501 6.1216 0.9051 16 6 1.7537 6.9148 -2.6198 17 6 3.1467 6.2843 -2.5655 18 6 3.6959 3.5892 -1.1496 19 6 4.0736 2.8881 0.1589 20 6 3.5653 1.4450 0.1258 21 1 4.0008 0.9261 -0.7281 22 7 3.9542 0.7619 1.3620 23 6 5.1918 0.1849 1.4652 24 1 5.8810 0.2331 0.6351 25 6 5.5605 -0.4619 2.6368 26 7 6.7499 -1.0169 2.7357 27 14 4.3688 -0.5447 4.0728 28 1 3.5343 -1.7673 3.9537 29 1 5.1308 -0.5877 5.3466 30 1 3.4938 0.6551 4.0597 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.9964 1.5379 -2.1547 37 1 0.5531 2.2139 -1.3595 38 1 4.0147 7.6468 -0.6680 39 1 4.3354 8.5677 1.5931 40 1 2.8140 7.9145 3.4157 41 1 0.9662 6.3478 2.9750 42 1 0.6398 5.4341 0.7119 43 1 1.0752 6.5704 -3.4003 44 1 1.6671 7.9680 -2.3528 45 1 3.9766 6.9228 -2.2626 46 1 3.3847 5.5252 -3.3105 47 1 3.9681 4.6432 -1.0912 48 1 4.2216 3.1195 -1.9809 49 1 3.6193 3.4147 0.9982 50 1 5.1577 2.8893 0.2726 51 1 3.3351 0.7183 2.1074 52 1 7.0074 -1.4692 3.5543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037966861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:41 Heat of formation + Delta-G solvation = 26.345563 kcal Electronic energy + Delta-G solvation = -31474.796104 eV Core-core repulsion = 27632.973716 eV Total energy + Delta-G solvation = -3841.822388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93501 -39.22717 -38.00440 -36.51887 -34.78547 -33.86754 -31.77352 -31.11220 -30.68826 -29.88302 -29.05328 -25.98379 -24.23700 -24.01555 -23.03818 -22.57124 -22.26022 -21.33653 -20.82090 -19.83986 -18.83202 -17.71587 -17.37424 -16.68696 -16.09746 -15.48650 -15.18134 -14.87783 -14.78832 -14.50282 -14.33805 -14.15355 -13.74648 -13.54302 -13.38261 -13.37853 -13.00202 -12.93260 -12.78192 -12.64375 -12.36431 -12.04452 -11.86569 -11.79942 -11.52198 -11.41935 -11.27305 -11.02133 -11.00979 -10.92495 -10.77358 -10.69513 -10.46192 -10.32609 -10.21311 -9.76073 -9.64792 -9.59069 -9.03329 -8.92819 -8.72779 -8.52840 -7.28126 -5.79421 -3.14383 1.17288 1.29239 2.53616 2.94723 3.35402 3.36535 3.38759 3.43682 3.82834 4.24595 4.32256 4.57007 4.58603 4.66453 4.86729 4.88449 4.97611 5.03149 5.03867 5.15814 5.24535 5.25826 5.32904 5.39180 5.46540 5.48131 5.49756 5.53416 5.58468 5.62069 5.64740 5.77165 5.80647 5.85430 5.91909 5.94066 6.00465 6.04482 6.10886 6.24299 6.29078 6.33928 6.35030 6.40761 6.43014 6.47606 6.56488 6.70209 6.80737 6.85918 6.96060 7.45879 7.96525 8.16992 8.39896 9.18276 9.91204 10.11314 11.39016 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004018 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.232357 B = 6966.438148 C = 8083.682301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.597 5.597 7 C 0.555 3.445 8 O -0.544 6.544 9 C -0.115 4.115 10 C -0.037 4.037 11 C -0.117 4.117 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.135 4.135 17 C -0.163 4.163 18 C 0.106 3.894 19 C -0.149 4.149 20 C 0.189 3.811 21 H 0.056 0.944 22 N -0.744 5.744 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.880 3.120 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 17.138 -8.618 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.329 5.329 7 C 0.342 3.658 8 O -0.422 6.422 9 C -0.118 4.118 10 C -0.037 4.037 11 C -0.135 4.135 12 C -0.134 4.134 13 C -0.139 4.139 14 C -0.131 4.131 15 C -0.123 4.123 16 C -0.173 4.173 17 C -0.199 4.199 18 C -0.017 4.017 19 C -0.190 4.190 20 C 0.079 3.921 21 H 0.074 0.926 22 N -0.386 5.386 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.582 5.582 27 Si 0.711 3.289 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.098 0.902 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.891 16.940 -8.783 21.493 hybrid contribution -0.578 -0.177 1.368 1.495 sum -10.469 16.763 -7.416 21.109 Atomic orbital electron populations 1.21855 0.96646 1.01196 1.01422 1.21460 0.94523 0.95691 1.03428 1.21825 0.97717 0.96222 0.97007 0.91345 1.21737 0.99394 0.81508 0.97663 1.48100 1.08747 1.06315 1.69705 1.19294 0.85900 0.84465 0.76113 1.90672 1.15790 1.86537 1.49170 1.20042 1.06474 0.94561 0.90773 1.18639 0.95932 0.97447 0.91726 1.20971 0.97423 0.97750 0.97350 1.21089 0.99337 1.00065 0.92874 1.21175 0.95414 0.98107 0.99169 1.21133 0.98170 0.97191 0.96607 1.20999 0.98959 0.99638 0.92700 1.23086 0.98052 0.97879 0.98242 1.23283 0.93243 1.03682 0.99727 1.21942 0.79039 1.01790 0.98916 1.22609 1.02477 0.98555 0.95384 1.20156 0.90610 0.90711 0.90595 0.92568 1.42772 1.16622 1.66259 1.12965 1.19047 0.90681 1.26912 1.00395 0.89220 1.24636 0.96388 1.00312 0.97593 1.69696 1.19342 1.41592 1.27541 0.86615 0.81014 0.77806 0.83497 1.21067 1.21818 1.20397 0.92946 0.93011 0.93110 0.91888 0.90487 0.91425 0.89158 0.85779 0.85910 0.86064 0.85984 0.86235 0.87757 0.87743 0.87290 0.87770 0.89809 0.91440 0.92308 0.90246 0.80656 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.11 -1.66 1.92 -90.50 -0.17 -1.84 16 4 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 5 C 0.12 1.67 5.31 -3.72 -0.02 1.65 16 6 N -0.60 -8.19 2.97 -172.73 -0.51 -8.71 16 7 C 0.56 7.91 5.68 -10.98 -0.06 7.85 16 8 O -0.54 -9.34 16.43 5.56 0.09 -9.25 16 9 C -0.12 -1.32 1.23 -156.81 -0.19 -1.52 16 10 C -0.04 -0.44 5.11 -104.63 -0.53 -0.97 16 11 C -0.12 -1.19 9.35 -39.58 -0.37 -1.56 16 12 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 13 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 14 C -0.11 -1.31 10.05 -39.58 -0.40 -1.71 16 15 C -0.10 -1.35 9.32 -39.58 -0.37 -1.72 16 16 C -0.14 -1.28 9.83 -26.73 -0.26 -1.54 16 17 C -0.16 -1.40 7.84 -26.73 -0.21 -1.61 16 18 C 0.11 1.38 6.05 -3.68 -0.02 1.36 16 19 C -0.15 -2.44 5.66 -26.62 -0.15 -2.59 16 20 C 0.19 3.40 2.19 -67.89 -0.15 3.25 16 21 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 22 N -0.74 -16.68 4.13 -53.38 -0.22 -16.90 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.63 16 24 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 27 Si 0.88 21.82 27.73 -169.99 -4.71 17.11 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.34 7.22 -51.93 -0.37 0.97 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.31 5.76 -51.93 -0.30 1.01 16 38 H 0.12 0.99 5.95 -52.48 -0.31 0.68 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.68 7.33 -52.48 -0.38 1.30 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.11 0.75 6.11 -51.93 -0.32 0.44 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.98 4.97 -51.92 -0.26 0.72 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.36 8.16 5.38 -40.82 -0.22 7.94 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 404.09 15.07 6.09 6.09 Total: -1.00 -31.95 404.09 -10.68 -42.63 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.44 Total: 11.16 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.74 Total: -14.16 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.04 Total: -53.58 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.95 -10.68 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.976 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds