Wall clock time and date at job start Wed Apr 1 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 H 1.09007 * 109.52144 * 54.92454 * 3 2 1 5 5 C 1.53188 * 109.50275 * 294.84082 * 3 2 1 6 6 N 1.46922 * 108.77439 * 185.41272 * 5 3 2 7 7 C 1.34782 * 120.62733 * 233.63162 * 6 5 3 8 8 O 1.21279 * 120.00143 * 355.43460 * 7 6 5 9 9 C 1.50701 * 120.00126 * 175.44151 * 7 6 5 10 10 C 1.50699 * 115.54795 * 280.10556 * 9 7 6 11 11 C 1.38230 * 120.00102 * 150.16667 * 10 9 7 12 12 C 1.38238 * 120.00240 * 179.76314 * 11 10 9 13 13 C 1.38234 * 119.99680 * 0.51246 * 12 11 10 14 14 C 1.38237 * 119.99847 * 359.74083 * 13 12 11 15 15 C 1.38232 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.52999 * 117.50313 * 134.39249 * 9 7 6 17 17 C 1.53001 * 117.49848 * 65.76799 * 9 7 6 18 18 C 1.46986 * 118.75696 * 53.60979 * 6 5 3 19 19 C 1.53185 * 108.73966 * 306.40605 * 18 6 5 20 20 C 1.53039 * 109.34070 * 54.62372 * 19 18 6 21 21 H 1.08996 * 109.45839 * 58.63760 * 20 19 18 22 22 N 1.46498 * 109.46491 * 178.59881 * 20 19 18 23 23 C 1.36938 * 119.99995 * 275.00017 * 22 20 19 24 24 H 1.07997 * 119.99963 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99886 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99353 * 179.97438 * 25 23 22 27 27 Si 1.86793 * 119.99897 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.47048 * 90.00210 * 27 25 23 29 29 H 1.48502 * 109.46921 * 209.99877 * 27 25 23 30 30 H 1.48494 * 109.47559 * 329.99887 * 27 25 23 31 31 H 1.08994 * 109.47194 * 59.99511 * 1 2 3 32 32 H 1.08997 * 109.47369 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46868 * 299.99338 * 1 2 3 34 34 H 1.09005 * 109.46868 * 240.00662 * 2 1 3 35 35 H 1.08994 * 109.47194 * 120.00489 * 2 1 3 36 36 H 1.08993 * 109.58413 * 305.20095 * 5 3 2 37 37 H 1.09000 * 109.58552 * 65.48132 * 5 3 2 38 38 H 1.08006 * 120.00277 * 359.97438 * 11 10 9 39 39 H 1.07998 * 120.00591 * 180.23138 * 12 11 10 40 40 H 1.08003 * 120.00417 * 179.72547 * 13 12 11 41 41 H 1.08000 * 120.00019 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.00132 * 179.97438 * 15 14 13 43 43 H 1.08996 * 117.49660 * 0.02562 * 16 9 7 44 44 H 1.09001 * 117.49974 * 145.01954 * 16 9 7 45 45 H 1.09003 * 117.50243 * 214.98205 * 17 9 7 46 46 H 1.09000 * 117.49918 * 0.02562 * 17 9 7 47 47 H 1.09009 * 109.62761 * 186.61530 * 18 6 5 48 48 H 1.09001 * 109.58286 * 66.17447 * 18 6 5 49 49 H 1.09001 * 109.49818 * 294.65489 * 19 18 6 50 50 H 1.09002 * 109.50052 * 174.59073 * 19 18 6 51 51 H 0.97001 * 119.99802 * 94.99850 * 22 20 19 52 52 H 0.97000 * 119.99371 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8408 5 6 1.6385 2.1269 -1.3104 6 7 2.2451 3.4644 -1.3504 7 6 1.4856 4.5566 -1.5669 8 8 0.3044 4.4347 -1.8130 9 6 2.1043 5.9293 -1.5032 10 6 2.3039 6.4886 -0.1182 11 6 3.3445 7.3640 0.1303 12 6 3.5247 7.8809 1.3997 13 6 2.6706 7.5142 2.4229 14 6 1.6332 6.6347 2.1755 15 6 1.4501 6.1216 0.9051 16 6 1.7537 6.9148 -2.6198 17 6 3.1467 6.2843 -2.5655 18 6 3.6959 3.5892 -1.1496 19 6 4.0736 2.8881 0.1589 20 6 3.5653 1.4450 0.1258 21 1 4.0008 0.9261 -0.7281 22 7 3.9542 0.7619 1.3620 23 6 5.1918 0.1849 1.4652 24 1 5.8810 0.2331 0.6351 25 6 5.5605 -0.4619 2.6368 26 7 6.7499 -1.0169 2.7357 27 14 4.3688 -0.5447 4.0728 28 1 3.5343 -1.7673 3.9537 29 1 5.1308 -0.5877 5.3466 30 1 3.4938 0.6551 4.0597 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.9964 1.5379 -2.1547 37 1 0.5531 2.2139 -1.3595 38 1 4.0147 7.6468 -0.6680 39 1 4.3354 8.5677 1.5931 40 1 2.8140 7.9145 3.4157 41 1 0.9662 6.3478 2.9750 42 1 0.6398 5.4341 0.7119 43 1 1.0752 6.5704 -3.4003 44 1 1.6671 7.9680 -2.3528 45 1 3.9766 6.9228 -2.2626 46 1 3.3847 5.5252 -3.3105 47 1 3.9681 4.6432 -1.0912 48 1 4.2216 3.1195 -1.9809 49 1 3.6193 3.4147 0.9982 50 1 5.1577 2.8893 0.2726 51 1 3.3351 0.7183 2.1074 52 1 7.0074 -1.4692 3.5543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037966861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:40 Heat of formation + Delta-G solvation = 9.693197 kcal Electronic energy + Delta-G solvation = -31475.518205 eV Core-core repulsion = 27632.973716 eV Total energy + Delta-G solvation = -3842.544489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.94225 -40.24312 -39.19581 -37.41834 -36.28088 -35.30665 -33.62199 -31.92483 -31.50767 -31.47436 -30.26878 -27.27573 -25.57548 -25.11981 -24.06840 -23.76296 -23.12279 -22.40512 -22.11760 -21.22894 -19.94944 -19.43180 -18.44084 -17.72141 -17.16486 -16.80454 -16.36636 -16.10728 -15.86919 -15.73903 -15.40748 -15.29178 -15.16083 -14.74710 -14.61160 -14.55668 -14.33302 -14.06377 -13.85508 -13.83356 -13.70148 -13.30522 -13.12943 -12.93957 -12.73576 -12.61032 -12.55498 -12.29518 -12.19157 -12.13586 -11.98230 -11.86689 -11.72507 -11.62475 -11.56314 -11.54464 -11.14951 -10.96601 -10.68061 -9.85772 -9.71606 -9.53384 -9.26936 -8.00229 -5.31531 0.36144 0.46692 1.36711 1.37518 1.44476 1.45895 1.90115 2.48286 2.57815 3.01984 3.30842 3.36102 3.46435 3.52599 3.71150 3.82509 3.90517 3.92431 4.02163 4.08240 4.12902 4.21355 4.25093 4.27814 4.36405 4.42973 4.49510 4.57564 4.65018 4.66066 4.70463 4.74779 4.75224 4.78341 4.87092 4.94440 4.97058 5.01045 5.06957 5.09642 5.12723 5.18068 5.22789 5.30823 5.42205 5.47084 5.54716 5.59916 5.60779 5.62442 5.80341 6.06875 6.24110 6.35301 7.06813 7.09803 7.86689 8.05151 9.21453 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004018 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.232357 B = 6966.438148 C = 8083.682301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.095 4.095 4 H 0.056 0.944 5 C 0.124 3.876 6 N -0.598 5.598 7 C 0.554 3.446 8 O -0.579 6.579 9 C -0.138 4.138 10 C -0.043 4.043 11 C -0.118 4.118 12 C -0.116 4.116 13 C -0.129 4.129 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.141 4.141 18 C 0.116 3.884 19 C -0.139 4.139 20 C 0.184 3.816 21 H 0.051 0.949 22 N -0.746 5.746 23 C -0.216 4.216 24 H 0.063 0.937 25 C -0.058 4.058 26 N -0.983 5.983 27 Si 0.943 3.057 28 H -0.280 1.280 29 H -0.299 1.299 30 H -0.260 1.260 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.064 0.936 51 H 0.361 0.639 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.789 19.327 -9.577 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.075 0.925 5 C 0.001 3.999 6 N -0.328 5.328 7 C 0.343 3.657 8 O -0.459 6.459 9 C -0.141 4.141 10 C -0.043 4.043 11 C -0.135 4.135 12 C -0.134 4.134 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.169 4.169 17 C -0.177 4.177 18 C -0.007 4.007 19 C -0.179 4.179 20 C 0.076 3.924 21 H 0.069 0.931 22 N -0.388 5.388 23 C -0.347 4.347 24 H 0.081 0.919 25 C -0.250 4.250 26 N -0.634 5.634 27 Si 0.771 3.229 28 H -0.206 1.206 29 H -0.226 1.226 30 H -0.186 1.186 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.158 0.842 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.128 0.872 47 H 0.122 0.878 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.194 0.806 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.197 19.166 -9.776 23.810 hybrid contribution -0.504 -0.821 1.584 1.854 sum -10.701 18.345 -8.193 22.764 Atomic orbital electron populations 1.21793 0.94743 1.02108 1.01808 1.21422 0.96200 0.94956 1.02389 1.21670 0.95474 0.96745 0.97613 0.92532 1.21663 0.99334 0.81907 0.97004 1.48146 1.08992 1.06228 1.69468 1.19794 0.85445 0.85493 0.74958 1.90645 1.17356 1.87177 1.50740 1.20000 1.09161 0.93317 0.91615 1.18726 0.96227 0.97944 0.91413 1.21277 0.96984 0.96913 0.98339 1.21487 0.99537 0.99837 0.92523 1.21472 0.95011 0.97692 1.00501 1.21299 0.99037 0.97801 0.96387 1.20966 0.99373 1.00586 0.94024 1.23162 0.98693 0.98194 0.96814 1.23462 0.93251 1.03354 0.97680 1.21916 0.78691 1.02724 0.97370 1.22394 1.01164 0.97336 0.97049 1.20378 0.92453 0.91169 0.88417 0.93097 1.42787 1.15056 1.66476 1.14524 1.19006 0.91464 1.25192 0.99049 0.91892 1.25313 0.98037 1.01156 1.00487 1.69857 1.21609 1.43713 1.28225 0.85590 0.79020 0.78457 0.79785 1.20636 1.22562 1.18558 0.91919 0.91856 0.93363 0.91392 0.93002 0.89981 0.89473 0.83034 0.83210 0.84197 0.85567 0.88691 0.88550 0.86249 0.84784 0.87189 0.87831 0.89678 0.93609 0.91781 0.80633 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.67 71.98 0.70 -2.91 16 2 C -0.11 -3.29 5.31 30.59 0.16 -3.12 16 3 C -0.09 -2.89 1.92 -10.72 -0.02 -2.91 16 4 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 5 C 0.12 3.32 5.31 86.36 0.46 3.78 16 6 N -0.60 -15.62 2.97 -818.77 -2.43 -18.05 16 7 C 0.55 15.27 5.68 87.66 0.50 15.77 16 8 O -0.58 -19.84 16.43 -3.03 -0.05 -19.89 16 9 C -0.14 -2.90 1.23 -53.67 -0.07 -2.96 16 10 C -0.04 -0.94 5.11 -19.87 -0.10 -1.04 16 11 C -0.12 -2.02 9.35 22.27 0.21 -1.81 16 12 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 13 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 14 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 15 C -0.13 -3.40 9.32 22.27 0.21 -3.19 16 16 C -0.13 -2.16 9.83 30.59 0.30 -1.86 16 17 C -0.14 -1.92 7.84 30.60 0.24 -1.68 16 18 C 0.12 2.78 6.05 86.35 0.52 3.30 16 19 C -0.14 -4.43 5.66 30.67 0.17 -4.26 16 20 C 0.18 6.56 2.19 45.02 0.10 6.66 16 21 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 22 N -0.75 -33.49 4.13 -322.81 -1.33 -34.82 16 23 C -0.22 -11.81 10.41 84.03 0.87 -10.94 16 24 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 25 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 26 N -0.98 -62.05 13.97 21.65 0.30 -61.74 16 27 Si 0.94 45.61 27.73 68.60 1.90 47.51 16 28 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 29 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 30 H -0.26 -11.67 6.52 99.48 0.65 -11.03 16 31 H 0.06 1.41 6.70 -2.39 -0.02 1.39 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.05 1.79 7.22 -2.39 -0.02 1.78 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.46 5.76 -2.39 -0.01 2.44 16 38 H 0.15 1.68 5.95 -2.91 -0.02 1.66 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.09 2.83 7.33 -2.91 -0.02 2.81 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.13 1.16 6.11 -2.39 -0.01 1.14 16 46 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 2.12 4.97 -2.38 -0.01 2.11 16 48 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.36 16.19 5.38 -92.71 -0.50 15.69 16 52 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -71.32 404.09 4.13 -67.18 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.35 Total: 36.54 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 5.39 Total: -16.73 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.47 Total: -114.61 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -71.32 4.13 -67.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.877 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds