Wall clock time and date at job start Wed Apr 1 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 H 1.08995 * 109.50328 * 305.06594 * 3 2 1 5 5 C 1.53627 * 109.45230 * 65.27630 * 3 2 1 6 6 N 1.46925 * 108.53897 * 174.73676 * 5 3 2 7 7 C 1.34784 * 120.62784 * 126.36709 * 6 5 3 8 8 O 1.21278 * 119.99743 * 5.18737 * 7 6 5 9 9 C 1.50701 * 119.99743 * 185.18492 * 7 6 5 10 10 C 1.50696 * 115.55093 * 65.64657 * 9 7 6 11 11 C 1.38237 * 120.00279 * 29.56066 * 10 9 7 12 12 C 1.38236 * 120.00007 * 179.97438 * 11 10 9 13 13 C 1.38228 * 120.00238 * 359.97438 * 12 11 10 14 14 C 1.38235 * 120.00012 * 0.27344 * 13 12 11 15 15 C 1.38237 * 119.99908 * 359.51438 * 14 13 12 16 16 C 1.52998 * 117.49615 * 211.31266 * 9 7 6 17 17 C 1.52999 * 117.49930 * 279.97390 * 9 7 6 18 18 C 1.46923 * 118.74206 * 306.09500 * 6 5 3 19 19 C 1.53192 * 108.77544 * 53.86072 * 18 6 5 20 20 C 1.53042 * 109.49449 * 185.00063 * 3 2 1 21 21 H 1.08996 * 109.44998 * 298.66367 * 20 3 2 22 22 N 1.46497 * 109.46087 * 58.63348 * 20 3 2 23 23 C 1.36934 * 120.00023 * 205.06331 * 22 20 3 24 24 H 1.08005 * 120.00120 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00059 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00013 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00112 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47222 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47256 * 119.99508 * 27 25 23 30 30 H 1.48505 * 109.47135 * 239.99558 * 27 25 23 31 31 H 1.09004 * 109.47133 * 299.99855 * 1 2 3 32 32 H 1.09004 * 109.47371 * 59.99375 * 1 2 3 33 33 H 1.08994 * 109.47510 * 179.97438 * 1 2 3 34 34 H 1.09009 * 109.46599 * 240.00596 * 2 1 3 35 35 H 1.08991 * 109.47187 * 120.00816 * 2 1 3 36 36 H 1.08993 * 109.74051 * 55.00269 * 5 3 2 37 37 H 1.08992 * 109.66241 * 294.42695 * 5 3 2 38 38 H 1.08007 * 119.99642 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.99303 * 180.02562 * 12 11 10 40 40 H 1.08004 * 120.00198 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.00060 * 179.73121 * 14 13 12 42 42 H 1.07999 * 120.00284 * 180.27519 * 15 14 13 43 43 H 1.08995 * 117.50063 * 214.99837 * 16 9 7 44 44 H 1.09001 * 117.50284 * 0.02724 * 16 9 7 45 45 H 1.09004 * 117.50071 * 359.97438 * 17 9 7 46 46 H 1.08997 * 117.49945 * 144.97988 * 17 9 7 47 47 H 1.09002 * 109.58844 * 173.64800 * 18 6 5 48 48 H 1.09000 * 109.58803 * 293.92659 * 18 6 5 49 49 H 1.08994 * 109.49968 * 65.31973 * 19 18 6 50 50 H 1.09002 * 109.49515 * 185.41977 * 19 18 6 51 51 H 0.97005 * 119.99809 * 25.07155 * 22 20 3 52 52 H 0.97000 * 120.00010 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 -0.8409 5 6 1.6393 2.1268 1.3158 6 7 2.2451 3.4649 1.3497 7 6 1.4857 4.5572 1.5667 8 8 0.3081 4.4345 1.8293 9 6 2.1001 5.9307 1.4828 10 6 2.5874 6.3426 0.1176 11 6 1.9709 5.8455 -1.0154 12 6 2.4177 6.2237 -2.2677 13 6 3.4806 7.0994 -2.3870 14 6 4.1004 7.5924 -1.2541 15 6 3.6509 7.2177 -0.0017 16 6 1.5170 7.0215 2.3835 17 6 2.8922 6.4255 2.6947 18 6 3.6952 3.5893 1.1488 19 6 4.0736 2.8881 -0.1596 20 6 3.5653 1.4449 -0.1258 21 1 4.0007 0.9265 0.7285 22 7 3.9542 0.7613 -1.3617 23 6 5.1918 0.1844 -1.4647 24 1 5.8810 0.2330 -0.6346 25 6 5.5605 -0.4629 -2.6360 26 7 4.7203 -0.5226 -3.6474 27 14 7.2485 -1.2506 -2.7762 28 1 7.9971 -1.0457 -1.5102 29 1 7.0962 -2.7055 -3.0319 30 1 7.9943 -0.6262 -3.8984 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 2.0008 1.5406 2.1606 37 1 0.5543 2.2155 1.3674 38 1 1.1401 5.1616 -0.9222 39 1 1.9357 5.8357 -3.1529 40 1 3.8294 7.3952 -3.3654 41 1 4.9337 8.2732 -1.3473 42 1 4.1322 7.6063 0.8835 43 1 1.4861 8.0369 1.9887 44 1 0.6894 6.7455 3.0370 45 1 2.9687 5.7576 3.5528 46 1 3.7661 7.0485 2.5045 47 1 3.9670 4.6433 1.0903 48 1 4.2209 3.1222 1.9815 49 1 3.6192 3.4143 -0.9990 50 1 5.1577 2.8893 -0.2726 51 1 3.3350 0.7175 -2.1072 52 1 4.9779 -0.9752 -4.4658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037966862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:44 Heat of formation + Delta-G solvation = 22.653714 kcal Electronic energy + Delta-G solvation = -31567.443147 eV Core-core repulsion = 27725.460668 eV Total energy + Delta-G solvation = -3841.982479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88493 -39.08168 -37.94155 -36.37195 -34.67091 -33.73479 -31.69477 -31.03844 -30.60787 -29.46743 -28.78944 -25.83636 -24.20782 -23.81202 -22.98366 -22.79016 -22.19236 -21.32811 -20.76394 -19.62380 -18.69143 -17.56830 -17.06079 -16.59876 -16.05135 -15.37885 -15.07269 -14.84043 -14.71836 -14.42841 -14.19849 -14.00753 -13.68633 -13.45318 -13.31200 -13.22731 -13.08807 -12.81400 -12.77698 -12.55596 -12.08919 -11.89618 -11.77397 -11.55796 -11.43542 -11.28368 -11.18527 -10.93827 -10.86797 -10.84056 -10.68898 -10.62439 -10.33364 -10.19209 -10.13107 -9.75522 -9.61112 -9.58848 -8.95303 -8.88451 -8.63886 -8.43206 -6.95605 -5.77865 -3.06063 1.25508 1.37727 2.56877 3.04006 3.41282 3.45456 3.47231 3.49270 3.90676 4.30682 4.39521 4.57189 4.65468 4.71456 4.92958 4.95982 5.09430 5.13455 5.22118 5.26491 5.33743 5.38881 5.42886 5.48936 5.53791 5.57324 5.60782 5.62425 5.66859 5.70830 5.73674 5.87205 5.89058 5.93281 5.99836 6.05486 6.13821 6.17385 6.35659 6.38283 6.41289 6.41886 6.48042 6.49729 6.53362 6.59666 6.71279 6.85219 6.94076 6.96960 7.08941 7.53868 7.69043 8.24013 8.40379 9.52055 10.09745 10.44755 11.44685 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.003986 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.001352 B = 7023.251079 C = 8441.554885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.102 4.102 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.596 5.596 7 C 0.554 3.446 8 O -0.546 6.546 9 C -0.116 4.116 10 C -0.039 4.039 11 C -0.101 4.101 12 C -0.109 4.109 13 C -0.119 4.119 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.135 4.135 17 C -0.159 4.159 18 C 0.107 3.893 19 C -0.148 4.148 20 C 0.184 3.816 21 H 0.046 0.954 22 N -0.719 5.719 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 15.692 10.187 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.327 5.327 7 C 0.341 3.659 8 O -0.423 6.423 9 C -0.119 4.119 10 C -0.040 4.040 11 C -0.119 4.119 12 C -0.127 4.127 13 C -0.137 4.137 14 C -0.134 4.134 15 C -0.138 4.138 16 C -0.173 4.173 17 C -0.196 4.196 18 C -0.016 4.016 19 C -0.189 4.189 20 C 0.074 3.926 21 H 0.064 0.936 22 N -0.360 5.360 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.095 15.511 10.342 19.326 hybrid contribution 0.956 -0.543 -0.611 1.258 sum -4.139 14.969 9.731 18.327 Atomic orbital electron populations 1.21841 0.96843 1.01028 1.01256 1.21454 0.94340 0.95750 1.03465 1.21847 0.97724 0.96163 0.96520 0.91291 1.21864 0.99287 0.81411 0.97832 1.48054 1.08707 1.06308 1.69641 1.19293 0.85805 0.84542 0.76237 1.90667 1.16049 1.86567 1.49063 1.20078 1.06519 0.93984 0.91347 1.18661 0.96090 0.97755 0.91476 1.20946 0.99619 0.99362 0.92003 1.21149 0.96911 0.97264 0.97332 1.21171 0.96262 0.97619 0.98675 1.21068 0.99784 1.00221 0.92342 1.20941 0.96629 0.98469 0.97753 1.23084 0.96957 0.96770 1.00441 1.23223 0.96020 1.03338 0.97042 1.21893 0.79110 1.01647 0.98921 1.22635 1.01991 0.98983 0.95289 1.20181 0.90703 0.90608 0.91122 0.93580 1.42401 1.16465 1.64391 1.12708 1.19252 0.91806 1.27084 0.98541 0.91257 1.24701 0.98047 1.01600 0.96444 1.69668 1.35122 1.48477 1.04738 0.86183 0.84142 0.78922 0.77333 1.20622 1.21948 1.21977 0.93249 0.93035 0.93172 0.89778 0.92473 0.91651 0.89263 0.86447 0.85852 0.86064 0.86039 0.85942 0.87808 0.87547 0.87987 0.87396 0.90051 0.91802 0.92052 0.90877 0.78241 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.68 37.16 0.36 -1.77 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.68 1.93 -90.27 -0.17 -1.86 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.75 5.34 -3.48 -0.02 1.73 16 6 N -0.60 -8.56 2.97 -172.51 -0.51 -9.07 16 7 C 0.55 8.21 5.77 -10.98 -0.06 8.14 16 8 O -0.55 -9.66 16.14 5.56 0.09 -9.57 16 9 C -0.12 -1.38 1.24 -156.82 -0.19 -1.58 16 10 C -0.04 -0.48 4.01 -104.62 -0.42 -0.90 16 11 C -0.10 -1.36 9.32 -39.58 -0.37 -1.73 16 12 C -0.11 -1.36 10.05 -39.59 -0.40 -1.76 16 13 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 14 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 15 C -0.12 -1.26 9.31 -39.58 -0.37 -1.63 16 16 C -0.14 -1.35 9.73 -26.69 -0.26 -1.61 16 17 C -0.16 -1.44 9.02 -26.69 -0.24 -1.68 16 18 C 0.11 1.48 6.10 -3.71 -0.02 1.45 16 19 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 20 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -17.03 4.33 -53.38 -0.23 -17.26 16 23 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 27 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 31 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.63 7.22 -51.92 -0.37 1.25 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.37 5.77 -51.93 -0.30 1.07 16 38 H 0.12 1.73 7.33 -52.48 -0.38 1.35 16 39 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.12 1.01 5.95 -52.49 -0.31 0.70 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.11 1.13 8.00 -51.93 -0.42 0.72 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.11 0.78 6.11 -51.93 -0.32 0.46 16 47 H 0.08 1.03 4.92 -51.93 -0.26 0.77 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 51 H 0.38 9.85 7.51 -40.82 -0.31 9.54 16 52 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -30.61 406.88 -10.95 -41.55 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.48 Total: 12.68 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -3.65 Total: -14.67 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.02 Total: -53.05 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.61 -10.95 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.207 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds