Wall clock time and date at job start Wed Apr 1 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 H 1.08995 * 109.50328 * 305.06594 * 3 2 1 5 5 C 1.53627 * 109.45230 * 65.27630 * 3 2 1 6 6 N 1.46925 * 108.53897 * 174.73676 * 5 3 2 7 7 C 1.34784 * 120.62784 * 126.36709 * 6 5 3 8 8 O 1.21278 * 119.99743 * 5.18737 * 7 6 5 9 9 C 1.50701 * 119.99743 * 185.18492 * 7 6 5 10 10 C 1.50696 * 115.55093 * 65.64657 * 9 7 6 11 11 C 1.38237 * 120.00279 * 29.56066 * 10 9 7 12 12 C 1.38236 * 120.00007 * 179.97438 * 11 10 9 13 13 C 1.38228 * 120.00238 * 359.97438 * 12 11 10 14 14 C 1.38235 * 120.00012 * 0.27344 * 13 12 11 15 15 C 1.38237 * 119.99908 * 359.51438 * 14 13 12 16 16 C 1.52998 * 117.49615 * 211.31266 * 9 7 6 17 17 C 1.52999 * 117.49930 * 279.97390 * 9 7 6 18 18 C 1.46923 * 118.74206 * 306.09500 * 6 5 3 19 19 C 1.53192 * 108.77544 * 53.86072 * 18 6 5 20 20 C 1.53042 * 109.49449 * 185.00063 * 3 2 1 21 21 H 1.08996 * 109.44998 * 298.66367 * 20 3 2 22 22 N 1.46497 * 109.46087 * 58.63348 * 20 3 2 23 23 C 1.36934 * 120.00023 * 205.06331 * 22 20 3 24 24 H 1.08005 * 120.00120 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00059 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00013 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00112 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47222 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47256 * 119.99508 * 27 25 23 30 30 H 1.48505 * 109.47135 * 239.99558 * 27 25 23 31 31 H 1.09004 * 109.47133 * 299.99855 * 1 2 3 32 32 H 1.09004 * 109.47371 * 59.99375 * 1 2 3 33 33 H 1.08994 * 109.47510 * 179.97438 * 1 2 3 34 34 H 1.09009 * 109.46599 * 240.00596 * 2 1 3 35 35 H 1.08991 * 109.47187 * 120.00816 * 2 1 3 36 36 H 1.08993 * 109.74051 * 55.00269 * 5 3 2 37 37 H 1.08992 * 109.66241 * 294.42695 * 5 3 2 38 38 H 1.08007 * 119.99642 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.99303 * 180.02562 * 12 11 10 40 40 H 1.08004 * 120.00198 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.00060 * 179.73121 * 14 13 12 42 42 H 1.07999 * 120.00284 * 180.27519 * 15 14 13 43 43 H 1.08995 * 117.50063 * 214.99837 * 16 9 7 44 44 H 1.09001 * 117.50284 * 0.02724 * 16 9 7 45 45 H 1.09004 * 117.50071 * 359.97438 * 17 9 7 46 46 H 1.08997 * 117.49945 * 144.97988 * 17 9 7 47 47 H 1.09002 * 109.58844 * 173.64800 * 18 6 5 48 48 H 1.09000 * 109.58803 * 293.92659 * 18 6 5 49 49 H 1.08994 * 109.49968 * 65.31973 * 19 18 6 50 50 H 1.09002 * 109.49515 * 185.41977 * 19 18 6 51 51 H 0.97005 * 119.99809 * 25.07155 * 22 20 3 52 52 H 0.97000 * 120.00010 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 -0.8409 5 6 1.6393 2.1268 1.3158 6 7 2.2451 3.4649 1.3497 7 6 1.4857 4.5572 1.5667 8 8 0.3081 4.4345 1.8293 9 6 2.1001 5.9307 1.4828 10 6 2.5874 6.3426 0.1176 11 6 1.9709 5.8455 -1.0154 12 6 2.4177 6.2237 -2.2677 13 6 3.4806 7.0994 -2.3870 14 6 4.1004 7.5924 -1.2541 15 6 3.6509 7.2177 -0.0017 16 6 1.5170 7.0215 2.3835 17 6 2.8922 6.4255 2.6947 18 6 3.6952 3.5893 1.1488 19 6 4.0736 2.8881 -0.1596 20 6 3.5653 1.4449 -0.1258 21 1 4.0007 0.9265 0.7285 22 7 3.9542 0.7613 -1.3617 23 6 5.1918 0.1844 -1.4647 24 1 5.8810 0.2330 -0.6346 25 6 5.5605 -0.4629 -2.6360 26 7 4.7203 -0.5226 -3.6474 27 14 7.2485 -1.2506 -2.7762 28 1 7.9971 -1.0457 -1.5102 29 1 7.0962 -2.7055 -3.0319 30 1 7.9943 -0.6262 -3.8984 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 2.0008 1.5406 2.1606 37 1 0.5543 2.2155 1.3674 38 1 1.1401 5.1616 -0.9222 39 1 1.9357 5.8357 -3.1529 40 1 3.8294 7.3952 -3.3654 41 1 4.9337 8.2732 -1.3473 42 1 4.1322 7.6063 0.8835 43 1 1.4861 8.0369 1.9887 44 1 0.6894 6.7455 3.0370 45 1 2.9687 5.7576 3.5528 46 1 3.7661 7.0485 2.5045 47 1 3.9670 4.6433 1.0903 48 1 4.2209 3.1222 1.9815 49 1 3.6192 3.4143 -0.9990 50 1 5.1577 2.8893 -0.2726 51 1 3.3350 0.7175 -2.1072 52 1 4.9779 -0.9752 -4.4658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037966862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:43 Heat of formation + Delta-G solvation = 7.494739 kcal Electronic energy + Delta-G solvation = -31568.100490 eV Core-core repulsion = 27725.460668 eV Total energy + Delta-G solvation = -3842.639821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94193 -40.15424 -39.19061 -37.32646 -36.18545 -35.27339 -33.44935 -31.91431 -31.46394 -31.06717 -30.15619 -27.20293 -25.68297 -25.01241 -24.24791 -23.77510 -23.08163 -22.41915 -22.10991 -21.03192 -19.79755 -19.06484 -18.51258 -17.65316 -17.17825 -16.77987 -16.33670 -15.95515 -15.77753 -15.58436 -15.51847 -15.37552 -15.13045 -14.77078 -14.58290 -14.51721 -14.28545 -13.89647 -13.77133 -13.76950 -13.52350 -13.10606 -13.04752 -12.87275 -12.66773 -12.61546 -12.55418 -12.26511 -12.16864 -12.07173 -11.97153 -11.85636 -11.66539 -11.59490 -11.53648 -11.51090 -11.11333 -10.92255 -10.69295 -9.83539 -9.67892 -9.50663 -8.94996 -7.90089 -5.17413 0.37929 0.48795 1.45103 1.48301 1.48849 1.58187 1.93500 2.58346 2.61075 3.04415 3.37900 3.43874 3.47752 3.74591 3.77603 3.84307 3.94482 3.98561 4.08416 4.09400 4.14198 4.24750 4.26447 4.32464 4.38555 4.45210 4.51458 4.60455 4.66419 4.72047 4.73559 4.77316 4.77394 4.82090 4.90929 4.95868 4.99545 5.04698 5.08518 5.11413 5.14092 5.20136 5.27165 5.36135 5.45270 5.52038 5.56062 5.58256 5.62147 5.63716 5.65373 6.08429 6.30901 6.37833 7.08426 7.37783 8.13405 8.37239 9.33681 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.003986 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.001352 B = 7023.251079 C = 8441.554885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.090 4.090 4 H 0.047 0.953 5 C 0.125 3.875 6 N -0.597 5.597 7 C 0.552 3.448 8 O -0.581 6.581 9 C -0.139 4.139 10 C -0.042 4.042 11 C -0.125 4.125 12 C -0.128 4.128 13 C -0.129 4.129 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.133 4.133 17 C -0.134 4.134 18 C 0.118 3.882 19 C -0.135 4.135 20 C 0.181 3.819 21 H 0.047 0.953 22 N -0.729 5.729 23 C -0.228 4.228 24 H 0.077 0.923 25 C -0.074 4.074 26 N -0.970 5.970 27 Si 0.965 3.035 28 H -0.264 1.264 29 H -0.298 1.298 30 H -0.298 1.298 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.136 0.864 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.062 0.938 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 17.679 12.784 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.110 4.110 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.327 5.327 7 C 0.341 3.659 8 O -0.461 6.461 9 C -0.142 4.142 10 C -0.042 4.042 11 C -0.143 4.143 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.131 4.131 15 C -0.134 4.134 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.005 4.005 19 C -0.176 4.176 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.368 5.368 23 C -0.359 4.359 24 H 0.095 0.905 25 C -0.266 4.266 26 N -0.622 5.622 27 Si 0.795 3.205 28 H -0.188 1.188 29 H -0.226 1.226 30 H -0.225 1.225 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.138 0.862 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.154 0.846 47 H 0.118 0.882 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.201 0.799 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.183 17.525 12.993 22.047 hybrid contribution 0.298 -1.125 -1.399 1.820 sum -2.885 16.401 11.594 20.291 Atomic orbital electron populations 1.21772 0.94967 1.01935 1.01567 1.21357 0.95986 0.95147 1.02012 1.21677 0.95932 0.96389 0.96994 0.93437 1.21752 0.99155 0.81935 0.96966 1.48094 1.09017 1.06166 1.69430 1.19831 0.85349 0.85640 0.75066 1.90641 1.17595 1.87225 1.50685 1.20024 1.09077 0.92675 0.92435 1.18721 0.96511 0.98137 0.90857 1.20858 0.99881 1.00272 0.93327 1.21256 0.97987 0.98309 0.97029 1.21438 0.95783 0.97228 1.00196 1.21469 1.00008 0.99839 0.91826 1.21271 0.95608 0.97425 0.99066 1.23159 0.97555 0.96836 0.99429 1.23415 0.96252 1.02414 0.94946 1.21859 0.78726 1.02522 0.97392 1.22395 1.00893 0.97594 0.96756 1.20385 0.92210 0.91167 0.88960 0.93457 1.42566 1.15508 1.64880 1.13838 1.19618 0.92541 1.25507 0.98284 0.90502 1.25441 1.01435 1.03228 0.96531 1.69829 1.36985 1.50188 1.05189 0.85187 0.80377 0.77359 0.77561 1.18836 1.22560 1.22511 0.91834 0.93794 0.91975 0.93423 0.91554 0.89894 0.89763 0.89218 0.86328 0.84521 0.83047 0.82747 0.86179 0.88618 0.87423 0.84571 0.88199 0.89703 0.94053 0.91905 0.79879 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.68 71.98 0.70 -3.37 16 2 C -0.11 -3.54 5.31 30.59 0.16 -3.38 16 3 C -0.09 -3.01 1.93 -10.57 -0.02 -3.03 16 4 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 5 C 0.12 3.60 5.34 86.51 0.46 4.06 16 6 N -0.60 -16.55 2.97 -818.08 -2.43 -18.97 16 7 C 0.55 15.97 5.77 87.66 0.51 16.47 16 8 O -0.58 -20.69 16.14 -3.02 -0.05 -20.74 16 9 C -0.14 -3.04 1.24 -53.68 -0.07 -3.11 16 10 C -0.04 -0.95 4.01 -19.87 -0.08 -1.03 16 11 C -0.13 -3.48 9.32 22.27 0.21 -3.27 16 12 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 13 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 14 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 15 C -0.12 -2.03 9.31 22.27 0.21 -1.82 16 16 C -0.13 -2.31 9.73 30.62 0.30 -2.01 16 17 C -0.13 -1.87 9.02 30.62 0.28 -1.60 16 18 C 0.12 2.99 6.10 86.36 0.53 3.52 16 19 C -0.14 -4.56 5.66 30.67 0.17 -4.38 16 20 C 0.18 6.85 2.19 45.02 0.10 6.95 16 21 H 0.05 1.79 8.08 -2.39 -0.02 1.78 16 22 N -0.73 -35.51 4.33 -322.81 -1.40 -36.91 16 23 C -0.23 -12.17 9.93 84.03 0.83 -11.33 16 24 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 26 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 27 Si 0.96 45.53 29.55 68.60 2.03 47.55 16 28 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 29 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 30 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 31 H 0.06 1.60 6.70 -2.39 -0.02 1.59 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.93 7.22 -2.38 -0.02 1.91 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.57 5.77 -2.39 -0.01 2.56 16 38 H 0.09 2.90 7.33 -2.91 -0.02 2.88 16 39 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.16 1.67 5.95 -2.91 -0.02 1.65 16 43 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 1.89 8.00 -2.39 -0.02 1.87 16 45 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.14 1.15 6.11 -2.39 -0.01 1.14 16 47 H 0.10 2.22 4.92 -2.39 -0.01 2.21 16 48 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.37 19.96 7.51 -92.70 -0.70 19.26 16 52 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.98 406.88 4.07 -64.90 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: 0.22 Total: 41.35 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 5.42 Total: -18.45 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.54 Total: -114.62 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.98 4.07 -64.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.400 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds