Wall clock time and date at job start Wed Apr 1 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47148 * 2 1 4 4 C 1.50700 * 109.47478 * 120.00468 * 2 1 3 5 5 O 1.21282 * 119.99976 * 209.76534 * 4 2 1 6 6 N 1.34771 * 119.99757 * 29.76199 * 4 2 1 7 7 C 1.46498 * 120.00121 * 175.22230 * 6 4 2 8 8 H 1.09008 * 109.31750 * 44.37796 * 7 6 4 9 9 C 1.53026 * 109.18602 * 284.82370 * 7 6 4 10 10 C 1.54025 * 108.29899 * 296.24723 * 9 7 6 11 11 H 1.08996 * 113.34246 * 168.00626 * 10 9 7 12 12 C 1.57160 * 105.53133 * 292.36418 * 10 9 7 13 13 C 1.55176 * 99.59299 * 74.59465 * 12 10 9 14 14 H 1.08995 * 112.48601 * 162.91270 * 13 12 10 15 15 C 1.52992 * 109.32900 * 164.01960 * 7 6 4 16 16 N 1.47793 * 104.87443 * 40.38658 * 13 12 10 17 17 C 1.36934 * 125.85407 * 153.26112 * 16 13 12 18 18 H 1.08003 * 119.99937 * 18.44317 * 17 16 13 19 19 C 1.38806 * 120.00048 * 198.44542 * 17 16 13 20 20 N 1.31621 * 120.00031 * 7.71249 * 19 17 16 21 21 Si 1.86807 * 120.00272 * 187.71590 * 19 17 16 22 22 H 1.48500 * 109.47033 * 59.99517 * 21 19 17 23 23 H 1.48495 * 109.47197 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46699 * 299.99860 * 21 19 17 25 25 C 1.47083 * 108.28734 * 333.25514 * 16 13 12 26 26 C 1.50708 * 109.46906 * 240.00285 * 2 1 3 27 27 C 1.38228 * 119.99774 * 230.58976 * 26 2 1 28 28 C 1.38244 * 119.99778 * 179.78903 * 27 26 2 29 29 C 1.38236 * 119.99419 * 0.43969 * 28 27 26 30 30 C 1.38230 * 120.00375 * 359.81805 * 29 28 27 31 31 C 1.38233 * 119.99557 * 50.86588 * 26 2 1 32 32 H 1.09004 * 109.47040 * 304.39891 * 1 2 3 33 33 H 1.09007 * 109.47439 * 64.39999 * 1 2 3 34 34 H 1.08997 * 109.47252 * 184.40423 * 1 2 3 35 35 H 1.09005 * 109.46832 * 185.17000 * 3 2 1 36 36 H 1.08993 * 109.47324 * 305.17138 * 3 2 1 37 37 H 1.09002 * 109.46629 * 65.17465 * 3 2 1 38 38 H 0.97001 * 120.00314 * 355.22262 * 6 4 2 39 39 H 1.09008 * 109.57404 * 55.03072 * 9 7 6 40 40 H 1.08995 * 109.58204 * 175.42576 * 9 7 6 41 41 H 1.09000 * 111.97457 * 316.93186 * 12 10 9 42 42 H 1.09007 * 111.20789 * 191.95097 * 12 10 9 43 43 H 1.09000 * 109.53454 * 184.89043 * 15 7 6 44 44 H 1.09000 * 109.52873 * 305.04221 * 15 7 6 45 45 H 0.96995 * 120.00130 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.97096 * 120.46469 * 25 16 13 47 47 H 1.09000 * 109.97678 * 241.70075 * 25 16 13 48 48 H 1.07999 * 120.00328 * 359.97438 * 27 26 2 49 49 H 1.07995 * 119.99953 * 180.27290 * 28 27 26 50 50 H 1.08007 * 119.99342 * 179.82991 * 29 28 27 51 51 H 1.07999 * 119.99915 * 179.97438 * 30 29 28 52 52 H 1.08002 * 120.00831 * 359.97438 * 31 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 3.0941 -0.3928 1.7230 6 7 1.3018 -1.6988 1.7833 7 6 1.8365 -2.4597 2.9152 8 1 2.2896 -1.7725 3.6298 9 6 2.8998 -3.4361 2.4075 10 6 2.2184 -4.4463 1.4655 11 1 2.9248 -5.0498 0.8956 12 6 1.2717 -5.3034 2.3815 13 6 0.1386 -4.2706 2.6206 14 1 -0.7768 -4.7337 2.9889 15 6 0.6978 -3.2208 3.5969 16 7 -0.0511 -3.6062 1.3141 17 6 -1.2089 -3.0251 0.8703 18 1 -1.9834 -2.7583 1.5742 19 6 -1.3872 -2.7791 -0.4841 20 7 -0.5156 -3.2387 -1.3568 21 14 -2.8640 -1.7956 -1.0684 22 1 -2.8295 -0.4417 -0.4593 23 1 -2.8236 -1.6735 -2.5478 24 1 -4.1126 -2.4893 -0.6624 25 6 1.2171 -3.6761 0.5723 26 6 2.0323 -0.7104 -1.2306 27 6 2.9792 -1.7105 -1.1131 28 6 3.4367 -2.3652 -2.2415 29 6 2.9539 -2.0132 -3.4880 30 6 2.0109 -1.0094 -3.6060 31 6 1.5502 -0.3578 -2.4772 32 1 -0.3633 0.5806 0.8480 33 1 -0.3634 0.4441 -0.9268 34 1 -0.3633 -1.0246 0.0789 35 1 3.1261 1.4439 -0.0926 36 1 1.6030 1.9824 -0.8400 37 1 1.7543 1.9289 0.9327 38 1 0.4218 -1.9064 1.4318 39 1 3.6613 -2.8896 1.8509 40 1 3.3594 -3.9477 3.2530 41 1 1.7543 -5.5838 3.3177 42 1 0.9004 -6.1814 1.8528 43 1 1.0754 -3.7184 4.4902 44 1 -0.0919 -2.5228 3.8749 45 1 -0.6400 -3.0665 -2.3032 46 1 1.0700 -4.2088 -0.3672 47 1 1.5894 -2.6707 0.3757 48 1 3.3593 -1.9826 -0.1395 49 1 4.1733 -3.1496 -2.1493 50 1 3.3134 -2.5228 -4.3699 51 1 1.6341 -0.7343 -4.5800 52 1 0.8134 0.4264 -2.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047195152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:41 Heat of formation + Delta-G solvation = 70.085836 kcal Electronic energy + Delta-G solvation = -34573.263104 eV Core-core repulsion = 30733.337436 eV Total energy + Delta-G solvation = -3839.925668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.09397 -39.14994 -37.65287 -34.74908 -33.60996 -33.07155 -30.81612 -30.64250 -30.08595 -29.25863 -27.90327 -26.54862 -25.24355 -23.77456 -23.19684 -22.13878 -21.58408 -20.63035 -19.61270 -18.83840 -18.63221 -17.30633 -16.58988 -16.08157 -15.20945 -15.12628 -14.68009 -14.55849 -14.29477 -13.89370 -13.63129 -13.44111 -13.06398 -12.87075 -12.77165 -12.47672 -12.43445 -12.20442 -11.98210 -11.86678 -11.70752 -11.65790 -11.59257 -11.44832 -11.41738 -11.34641 -11.09744 -10.89142 -10.62161 -10.55730 -10.25193 -10.16326 -10.13773 -9.89898 -9.74377 -9.61994 -9.32721 -8.81806 -8.72440 -8.26809 -8.06794 -7.47950 -6.84316 -5.84208 -3.36739 1.97438 2.02751 3.24320 3.30850 3.33093 3.41313 4.11630 4.28153 4.38854 5.12807 5.15834 5.21255 5.25594 5.33081 5.47548 5.49642 5.59051 5.61311 5.62327 5.62807 5.75784 5.83300 5.92488 5.93078 6.01419 6.06391 6.09587 6.09962 6.16061 6.23405 6.27401 6.28856 6.38770 6.42662 6.48640 6.54479 6.57742 6.60330 6.63945 6.70309 6.80086 6.88788 6.93916 7.03343 7.07941 7.17454 7.20860 7.45203 7.51301 7.59255 7.63875 7.80097 8.16438 8.68652 9.00002 9.27735 9.57259 10.30181 11.12128 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.007625 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.324947 B = 3671.301642 C = 4544.998315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.037 4.037 3 C -0.123 4.123 4 C 0.510 3.490 5 O -0.576 6.576 6 N -0.694 5.694 7 C 0.155 3.845 8 H 0.063 0.937 9 C -0.123 4.123 10 C -0.116 4.116 11 H 0.073 0.927 12 C -0.129 4.129 13 C 0.146 3.854 14 H 0.066 0.934 15 C -0.140 4.140 16 N -0.587 5.587 17 C -0.274 4.274 18 H 0.077 0.923 19 C 0.019 3.981 20 N -0.874 5.874 21 Si 0.885 3.115 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.116 3.884 26 C -0.040 4.040 27 C -0.096 4.096 28 C -0.113 4.113 29 C -0.122 4.122 30 C -0.119 4.119 31 C -0.105 4.105 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.440 0.560 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.259 0.741 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 1.927 1.227 5.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.040 4.040 3 C -0.181 4.181 4 C 0.295 3.705 5 O -0.457 6.457 6 N -0.365 5.365 7 C 0.050 3.950 8 H 0.081 0.919 9 C -0.161 4.161 10 C -0.136 4.136 11 H 0.091 0.909 12 C -0.167 4.167 13 C 0.039 3.961 14 H 0.084 0.916 15 C -0.180 4.180 16 N -0.313 5.313 17 C -0.402 4.402 18 H 0.095 0.905 19 C -0.183 4.183 20 N -0.515 5.515 21 Si 0.713 3.287 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.008 4.008 26 C -0.041 4.041 27 C -0.114 4.114 28 C -0.131 4.131 29 C -0.140 4.140 30 C -0.137 4.137 31 C -0.123 4.123 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.301 0.699 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.136 0.864 49 H 0.131 0.869 50 H 0.129 0.871 51 H 0.130 0.870 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.999 2.165 1.291 5.599 hybrid contribution -1.285 0.182 -0.506 1.393 sum 3.714 2.347 0.785 4.463 Atomic orbital electron populations 1.22640 0.92157 1.07852 1.01037 1.19650 0.97437 0.95500 0.91458 1.21692 1.01693 0.93277 1.01439 1.20340 0.84799 0.80244 0.85086 1.90576 1.23966 1.67023 1.64150 1.48215 1.24303 1.31749 1.32206 1.20624 0.93798 0.92197 0.88416 0.91919 1.22103 0.97628 0.97406 0.99011 1.23086 0.97341 0.96397 0.96729 0.90856 1.23277 0.97370 0.97608 0.98454 1.21653 0.95392 0.90989 0.88111 0.91641 1.22501 0.97602 0.99523 0.98375 1.44950 1.08619 1.63677 1.14098 1.18953 0.95528 1.34640 0.91061 0.90510 1.24968 0.97442 1.00172 0.95747 1.69879 1.34788 1.45363 1.01505 0.86733 0.83032 0.80587 0.78333 1.20055 1.21080 1.20897 1.22597 0.82914 1.01082 0.94205 1.19188 0.95927 0.95980 0.92964 1.21005 0.96536 0.95376 0.98508 1.20911 1.00205 0.99344 0.92625 1.20917 0.98175 0.97895 0.97038 1.20883 0.97903 0.97126 0.97804 1.20735 0.99395 1.00148 0.91998 0.93143 0.92764 0.85771 0.91868 0.92358 0.92523 0.69888 0.92119 0.92102 0.92143 0.92133 0.91881 0.92104 0.93008 0.91288 0.90070 0.86434 0.86922 0.87054 0.86982 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 7.02 37.16 0.26 -3.29 16 2 C -0.04 -0.72 0.78 -156.81 -0.12 -0.84 16 3 C -0.12 -2.07 7.83 37.16 0.29 -1.78 16 4 C 0.51 10.58 3.79 -10.99 -0.04 10.54 16 5 O -0.58 -12.86 15.23 5.56 0.08 -12.77 16 6 N -0.69 -14.17 2.59 -53.80 -0.14 -14.31 16 7 C 0.16 2.88 2.72 -67.92 -0.18 2.70 16 8 H 0.06 1.17 7.81 -51.92 -0.41 0.77 16 9 C -0.12 -2.16 5.27 -26.18 -0.14 -2.30 16 10 C -0.12 -2.15 4.34 -86.93 -0.38 -2.53 16 11 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.13 -2.21 6.28 -23.32 -0.15 -2.35 16 13 C 0.15 2.75 4.25 -65.61 -0.28 2.47 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.14 -2.38 5.45 -26.28 -0.14 -2.52 16 16 N -0.59 -12.90 1.77 -161.37 -0.29 -13.19 16 17 C -0.27 -6.53 7.78 -15.06 -0.12 -6.64 16 18 H 0.08 1.82 7.84 -52.48 -0.41 1.41 16 19 C 0.02 0.45 3.44 -17.43 -0.06 0.39 16 20 N -0.87 -21.78 10.67 55.49 0.59 -21.19 16 21 Si 0.88 19.55 28.09 -169.99 -4.77 14.78 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.12 2.50 4.18 -2.83 -0.01 2.49 16 26 C -0.04 -0.77 4.42 -104.62 -0.46 -1.23 16 27 C -0.10 -1.87 7.35 -39.58 -0.29 -2.16 16 28 C -0.11 -1.97 10.05 -39.58 -0.40 -2.36 16 29 C -0.12 -1.98 10.05 -39.59 -0.40 -2.38 16 30 C -0.12 -1.96 10.05 -39.59 -0.40 -2.36 16 31 C -0.10 -1.86 8.92 -39.58 -0.35 -2.22 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 1.00 6.77 -51.92 -0.35 0.65 16 34 H 0.12 2.70 1.98 -51.93 -0.10 2.60 16 35 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 36 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.44 9.42 1.83 -44.30 -0.08 9.34 16 39 H 0.06 1.15 6.71 -51.92 -0.35 0.80 16 40 H 0.06 0.93 7.97 -51.93 -0.41 0.52 16 41 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 46 H 0.07 1.76 6.36 -51.93 -0.33 1.42 16 47 H 0.08 1.74 1.26 -62.11 -0.08 1.66 16 48 H 0.12 2.43 5.11 -52.49 -0.27 2.16 16 49 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 50 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 51 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 52 H 0.11 1.85 7.00 -52.49 -0.37 1.48 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -26.34 367.44 -10.11 -36.44 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -7.75 Total: 21.08 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -3.37 Total: -16.38 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.17 Total: -48.69 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.77 Total: 14.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.34 -10.11 -36.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047195152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.529 kcal (2) G-P(sol) polarization free energy of solvation -26.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds