Wall clock time and date at job start Wed Apr 1 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47148 * 2 1 4 4 C 1.50700 * 109.47478 * 120.00468 * 2 1 3 5 5 O 1.21282 * 119.99976 * 209.76534 * 4 2 1 6 6 N 1.34771 * 119.99757 * 29.76199 * 4 2 1 7 7 C 1.46498 * 120.00121 * 175.22230 * 6 4 2 8 8 H 1.09008 * 109.31750 * 44.37796 * 7 6 4 9 9 C 1.53026 * 109.18602 * 284.82370 * 7 6 4 10 10 C 1.54025 * 108.29899 * 296.24723 * 9 7 6 11 11 H 1.08996 * 113.34246 * 168.00626 * 10 9 7 12 12 C 1.57160 * 105.53133 * 292.36418 * 10 9 7 13 13 C 1.55176 * 99.59299 * 74.59465 * 12 10 9 14 14 H 1.08995 * 112.48601 * 162.91270 * 13 12 10 15 15 C 1.52992 * 109.32900 * 164.01960 * 7 6 4 16 16 N 1.47793 * 104.87443 * 40.38658 * 13 12 10 17 17 C 1.36934 * 125.85407 * 153.26112 * 16 13 12 18 18 H 1.08003 * 119.99937 * 18.44317 * 17 16 13 19 19 C 1.38806 * 120.00048 * 198.44542 * 17 16 13 20 20 N 1.31621 * 120.00031 * 7.71249 * 19 17 16 21 21 Si 1.86807 * 120.00272 * 187.71590 * 19 17 16 22 22 H 1.48500 * 109.47033 * 59.99517 * 21 19 17 23 23 H 1.48495 * 109.47197 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46699 * 299.99860 * 21 19 17 25 25 C 1.47083 * 108.28734 * 333.25514 * 16 13 12 26 26 C 1.50708 * 109.46906 * 240.00285 * 2 1 3 27 27 C 1.38228 * 119.99774 * 230.58976 * 26 2 1 28 28 C 1.38244 * 119.99778 * 179.78903 * 27 26 2 29 29 C 1.38236 * 119.99419 * 0.43969 * 28 27 26 30 30 C 1.38230 * 120.00375 * 359.81805 * 29 28 27 31 31 C 1.38233 * 119.99557 * 50.86588 * 26 2 1 32 32 H 1.09004 * 109.47040 * 304.39891 * 1 2 3 33 33 H 1.09007 * 109.47439 * 64.39999 * 1 2 3 34 34 H 1.08997 * 109.47252 * 184.40423 * 1 2 3 35 35 H 1.09005 * 109.46832 * 185.17000 * 3 2 1 36 36 H 1.08993 * 109.47324 * 305.17138 * 3 2 1 37 37 H 1.09002 * 109.46629 * 65.17465 * 3 2 1 38 38 H 0.97001 * 120.00314 * 355.22262 * 6 4 2 39 39 H 1.09008 * 109.57404 * 55.03072 * 9 7 6 40 40 H 1.08995 * 109.58204 * 175.42576 * 9 7 6 41 41 H 1.09000 * 111.97457 * 316.93186 * 12 10 9 42 42 H 1.09007 * 111.20789 * 191.95097 * 12 10 9 43 43 H 1.09000 * 109.53454 * 184.89043 * 15 7 6 44 44 H 1.09000 * 109.52873 * 305.04221 * 15 7 6 45 45 H 0.96995 * 120.00130 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.97096 * 120.46469 * 25 16 13 47 47 H 1.09000 * 109.97678 * 241.70075 * 25 16 13 48 48 H 1.07999 * 120.00328 * 359.97438 * 27 26 2 49 49 H 1.07995 * 119.99953 * 180.27290 * 28 27 26 50 50 H 1.08007 * 119.99342 * 179.82991 * 29 28 27 51 51 H 1.07999 * 119.99915 * 179.97438 * 30 29 28 52 52 H 1.08002 * 120.00831 * 359.97438 * 31 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 3.0941 -0.3928 1.7230 6 7 1.3018 -1.6988 1.7833 7 6 1.8365 -2.4597 2.9152 8 1 2.2896 -1.7725 3.6298 9 6 2.8998 -3.4361 2.4075 10 6 2.2184 -4.4463 1.4655 11 1 2.9248 -5.0498 0.8956 12 6 1.2717 -5.3034 2.3815 13 6 0.1386 -4.2706 2.6206 14 1 -0.7768 -4.7337 2.9889 15 6 0.6978 -3.2208 3.5969 16 7 -0.0511 -3.6062 1.3141 17 6 -1.2089 -3.0251 0.8703 18 1 -1.9834 -2.7583 1.5742 19 6 -1.3872 -2.7791 -0.4841 20 7 -0.5156 -3.2387 -1.3568 21 14 -2.8640 -1.7956 -1.0684 22 1 -2.8295 -0.4417 -0.4593 23 1 -2.8236 -1.6735 -2.5478 24 1 -4.1126 -2.4893 -0.6624 25 6 1.2171 -3.6761 0.5723 26 6 2.0323 -0.7104 -1.2306 27 6 2.9792 -1.7105 -1.1131 28 6 3.4367 -2.3652 -2.2415 29 6 2.9539 -2.0132 -3.4880 30 6 2.0109 -1.0094 -3.6060 31 6 1.5502 -0.3578 -2.4772 32 1 -0.3633 0.5806 0.8480 33 1 -0.3634 0.4441 -0.9268 34 1 -0.3633 -1.0246 0.0789 35 1 3.1261 1.4439 -0.0926 36 1 1.6030 1.9824 -0.8400 37 1 1.7543 1.9289 0.9327 38 1 0.4218 -1.9064 1.4318 39 1 3.6613 -2.8896 1.8509 40 1 3.3594 -3.9477 3.2530 41 1 1.7543 -5.5838 3.3177 42 1 0.9004 -6.1814 1.8528 43 1 1.0754 -3.7184 4.4902 44 1 -0.0919 -2.5228 3.8749 45 1 -0.6400 -3.0665 -2.3032 46 1 1.0700 -4.2088 -0.3672 47 1 1.5894 -2.6707 0.3757 48 1 3.3593 -1.9826 -0.1395 49 1 4.1733 -3.1496 -2.1493 50 1 3.3134 -2.5228 -4.3699 51 1 1.6341 -0.7343 -4.5800 52 1 0.8134 0.4264 -2.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047195152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:40 Heat of formation + Delta-G solvation = 59.458927 kcal Electronic energy + Delta-G solvation = -34573.723921 eV Core-core repulsion = 30733.337436 eV Total energy + Delta-G solvation = -3840.386485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.61979 -40.58937 -39.14430 -36.26875 -35.27736 -34.62229 -32.39718 -32.15929 -31.50156 -30.62693 -29.43013 -28.03178 -26.89989 -25.22090 -24.80104 -23.53036 -22.98333 -22.09746 -21.22027 -20.34234 -20.12692 -18.91038 -18.12822 -17.60431 -16.77873 -16.67245 -16.28888 -16.04889 -15.75694 -15.35615 -15.25094 -14.83630 -14.51435 -14.35833 -14.18472 -14.03415 -13.93078 -13.73854 -13.47948 -13.30363 -13.16003 -13.12626 -13.00605 -12.98362 -12.87059 -12.81215 -12.68847 -12.55271 -12.15163 -11.94004 -11.92731 -11.75464 -11.59162 -11.53388 -11.31680 -11.08192 -10.82168 -10.50359 -10.39402 -9.63519 -9.43499 -9.07843 -8.58603 -7.66165 -5.19049 0.62334 0.66145 1.47244 1.52036 1.53649 1.82505 2.49227 2.63713 3.02821 3.36843 3.67770 3.73392 3.78411 3.87844 4.01869 4.12081 4.14204 4.20921 4.24211 4.29820 4.33252 4.38114 4.47832 4.49270 4.64850 4.67704 4.68599 4.74189 4.78946 4.84608 4.87390 4.91068 4.95561 4.99636 5.09262 5.14895 5.16824 5.23973 5.25641 5.28106 5.35471 5.41644 5.52528 5.60397 5.66895 5.69393 5.73123 5.81056 5.92052 5.98022 6.04688 6.26228 6.38049 7.05842 7.20605 7.66062 7.81956 8.53482 9.26942 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.007625 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.324947 B = 3671.301642 C = 4544.998315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.119 4.119 4 C 0.506 3.494 5 O -0.598 6.598 6 N -0.698 5.698 7 C 0.145 3.855 8 H 0.061 0.939 9 C -0.113 4.113 10 C -0.117 4.117 11 H 0.078 0.922 12 C -0.116 4.116 13 C 0.135 3.865 14 H 0.067 0.933 15 C -0.129 4.129 16 N -0.598 5.598 17 C -0.277 4.277 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.887 5.887 21 Si 0.918 3.082 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.117 3.883 26 C -0.052 4.052 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.123 4.123 30 C -0.120 4.120 31 C -0.118 4.118 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.437 0.563 39 H 0.040 0.960 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.026 0.974 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.127 0.873 50 H 0.141 0.859 51 H 0.140 0.860 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 1.818 1.639 5.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.042 4.042 3 C -0.176 4.176 4 C 0.292 3.708 5 O -0.482 6.482 6 N -0.368 5.368 7 C 0.040 3.960 8 H 0.079 0.921 9 C -0.151 4.151 10 C -0.136 4.136 11 H 0.096 0.904 12 C -0.154 4.154 13 C 0.029 3.971 14 H 0.085 0.915 15 C -0.169 4.169 16 N -0.325 5.325 17 C -0.406 4.406 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.529 5.529 21 Si 0.747 3.253 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.216 1.216 25 C -0.007 4.007 26 C -0.053 4.053 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.141 4.141 30 C -0.138 4.138 31 C -0.136 4.136 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.297 0.703 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.104 0.896 48 H 0.115 0.885 49 H 0.145 0.855 50 H 0.159 0.841 51 H 0.158 0.842 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.253 2.048 1.736 5.899 hybrid contribution -1.373 0.176 -0.632 1.521 sum 3.880 2.224 1.105 4.606 Atomic orbital electron populations 1.22615 0.92685 1.06874 1.01691 1.19688 0.96995 0.96570 0.90929 1.21674 1.01226 0.92188 1.02553 1.20640 0.84484 0.80249 0.85382 1.90546 1.24853 1.67823 1.64954 1.48326 1.24108 1.31738 1.32596 1.20857 0.94650 0.92437 0.88043 0.92066 1.22032 0.96756 0.96815 0.99509 1.23048 0.97107 0.96701 0.96780 0.90357 1.23241 0.96279 0.96397 0.99513 1.21885 0.96261 0.91905 0.87074 0.91530 1.22416 0.96810 0.98769 0.98888 1.45061 1.08203 1.63994 1.15268 1.19058 0.95911 1.34529 0.91073 0.90913 1.25276 0.98595 1.00884 0.95846 1.70056 1.35630 1.46338 1.00894 0.86200 0.81196 0.80483 0.77454 1.18858 1.21906 1.21558 1.22493 0.83725 1.01242 0.93198 1.19257 0.96294 0.96271 0.93443 1.20946 0.97661 0.96527 0.98252 1.21180 1.00563 0.99544 0.92773 1.21280 0.97650 0.97685 0.97516 1.21270 0.97355 0.96533 0.98664 1.20961 0.99831 1.00835 0.91987 0.92611 0.91916 0.87483 0.92657 0.90140 0.92257 0.70335 0.94092 0.88919 0.88568 0.93040 0.88225 0.92723 0.94059 0.95607 0.89606 0.88489 0.85464 0.84108 0.84200 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.09 7.02 71.98 0.51 -6.59 16 2 C -0.04 -1.49 0.78 -53.67 -0.04 -1.53 16 3 C -0.12 -3.93 7.83 71.98 0.56 -3.36 16 4 C 0.51 21.17 3.79 87.66 0.33 21.50 16 5 O -0.60 -27.06 15.23 -3.04 -0.05 -27.11 16 6 N -0.70 -28.46 2.59 -442.51 -1.15 -29.61 16 7 C 0.15 5.20 2.72 45.00 0.12 5.32 16 8 H 0.06 2.21 7.81 -2.38 -0.02 2.19 16 9 C -0.11 -3.79 5.27 30.95 0.16 -3.63 16 10 C -0.12 -4.22 4.34 -8.40 -0.04 -4.26 16 11 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 12 C -0.12 -3.71 6.28 32.80 0.21 -3.50 16 13 C 0.14 4.87 4.25 45.79 0.19 5.06 16 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.13 -4.08 5.45 30.89 0.17 -3.92 16 16 N -0.60 -26.24 1.77 -664.45 -1.18 -27.41 16 17 C -0.28 -13.26 7.78 84.03 0.65 -12.60 16 18 H 0.07 3.46 7.84 -2.91 -0.02 3.44 16 19 C -0.01 -0.29 3.44 84.86 0.29 0.01 16 20 N -0.89 -44.88 10.67 21.65 0.23 -44.65 16 21 Si 0.92 39.93 28.09 68.60 1.93 41.86 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 25 C 0.12 5.13 4.18 86.85 0.36 5.49 16 26 C -0.05 -2.00 4.42 -19.87 -0.09 -2.09 16 27 C -0.12 -4.56 7.35 22.27 0.16 -4.39 16 28 C -0.12 -4.25 10.05 22.27 0.22 -4.03 16 29 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 30 C -0.12 -3.77 10.05 22.27 0.22 -3.54 16 31 C -0.12 -4.11 8.92 22.27 0.20 -3.91 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 2.27 6.77 -2.38 -0.02 2.25 16 34 H 0.11 4.65 1.98 -2.39 0.00 4.64 16 35 H 0.05 1.89 8.02 -2.38 -0.02 1.87 16 36 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.44 18.72 1.83 -99.58 -0.18 18.54 16 39 H 0.04 1.54 6.71 -2.38 -0.02 1.52 16 40 H 0.09 2.52 7.97 -2.39 -0.02 2.50 16 41 H 0.10 2.41 7.75 -2.39 -0.02 2.39 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.10 2.44 8.00 -2.39 -0.02 2.42 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.25 12.76 8.31 -92.71 -0.77 11.99 16 46 H 0.03 1.35 6.36 -2.39 -0.02 1.34 16 47 H 0.09 3.72 1.26 -22.49 -0.03 3.70 16 48 H 0.10 4.16 5.11 -2.91 -0.01 4.15 16 49 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 50 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 51 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 52 H 0.12 3.90 7.00 -2.91 -0.02 3.88 16 Total: -1.00 -57.72 367.44 4.95 -52.77 By element: Atomic # 1 Polarization: 57.01 SS G_CDS: 0.73 Total: 57.74 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.43 Total: -23.58 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -2.09 Total: -101.67 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.93 Total: 41.86 kcal Total: -57.72 4.95 -52.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047195152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.226 kcal (2) G-P(sol) polarization free energy of solvation -57.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds