Wall clock time and date at job start Wed Apr 1 2020 01:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47267 * 2 1 4 4 C 1.50703 * 109.47211 * 120.00127 * 2 1 3 5 5 O 1.21283 * 120.00024 * 115.65262 * 4 2 1 6 6 N 1.34773 * 119.99824 * 295.65563 * 4 2 1 7 7 C 1.46506 * 119.99838 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.32487 * 34.64545 * 7 6 4 9 9 C 1.53032 * 109.32498 * 154.10821 * 7 6 4 10 10 C 1.53969 * 108.82496 * 175.67709 * 9 7 6 11 11 H 1.09002 * 112.99221 * 169.00119 * 10 9 7 12 12 C 1.55421 * 106.41933 * 293.82139 * 10 9 7 13 13 C 1.55167 * 100.35411 * 73.37686 * 12 10 9 14 14 H 1.09004 * 113.05084 * 162.99377 * 13 12 10 15 15 C 1.52987 * 109.32587 * 275.00006 * 7 6 4 16 16 N 1.47796 * 104.25317 * 40.55652 * 13 12 10 17 17 C 1.36931 * 125.85551 * 153.50817 * 16 13 12 18 18 H 1.08001 * 120.00607 * 5.22430 * 17 16 13 19 19 C 1.38810 * 119.99783 * 185.22445 * 17 16 13 20 20 N 1.31621 * 120.00166 * 5.67036 * 19 17 16 21 21 Si 1.86802 * 120.00251 * 185.67242 * 19 17 16 22 22 H 1.48498 * 109.47263 * 265.00677 * 21 19 17 23 23 H 1.48507 * 109.46818 * 25.00525 * 21 19 17 24 24 H 1.48499 * 109.47380 * 144.99944 * 21 19 17 25 25 C 1.47083 * 108.28350 * 333.76866 * 16 13 12 26 26 C 1.50707 * 109.47132 * 239.99699 * 2 1 3 27 27 C 1.38234 * 119.99409 * 125.81645 * 26 2 1 28 28 C 1.38239 * 119.99623 * 179.79059 * 27 26 2 29 29 C 1.38241 * 119.99741 * 0.46583 * 28 27 26 30 30 C 1.38226 * 120.00042 * 359.76779 * 29 28 27 31 31 C 1.38229 * 120.00244 * 306.09285 * 26 2 1 32 32 H 1.08997 * 109.47027 * 299.99539 * 1 2 3 33 33 H 1.08998 * 109.47302 * 60.00093 * 1 2 3 34 34 H 1.09005 * 109.46805 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46988 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47370 * 300.00373 * 3 2 1 37 37 H 1.09004 * 109.47071 * 60.00316 * 3 2 1 38 38 H 0.96993 * 120.00453 * 359.97438 * 6 4 2 39 39 H 1.09001 * 109.57758 * 295.48730 * 9 7 6 40 40 H 1.09003 * 109.57411 * 55.74329 * 9 7 6 41 41 H 1.09007 * 111.22998 * 315.60397 * 12 10 9 42 42 H 1.08995 * 111.23815 * 191.16208 * 12 10 9 43 43 H 1.08998 * 109.52971 * 64.75558 * 15 7 6 44 44 H 1.08995 * 109.59028 * 304.56807 * 15 7 6 45 45 H 0.97000 * 120.00210 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.97133 * 120.22126 * 25 16 13 47 47 H 1.08999 * 109.97746 * 241.50613 * 25 16 13 48 48 H 1.07999 * 120.00803 * 0.02562 * 27 26 2 49 49 H 1.08005 * 120.00214 * 180.25054 * 28 27 26 50 50 H 1.08003 * 119.99329 * 179.79051 * 29 28 27 51 51 H 1.08004 * 119.99891 * 180.02562 * 30 29 28 52 52 H 1.08002 * 119.99859 * 359.97438 * 31 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6632 -1.7405 1.1209 6 7 1.7805 -0.2012 2.4526 7 6 2.2684 -0.8921 3.6488 8 1 3.2309 -1.3550 3.4307 9 6 2.4431 0.1206 4.7828 10 6 2.8508 -0.6321 6.0626 11 1 3.1780 0.0331 6.8617 12 6 1.6345 -1.5142 6.4599 13 6 1.7238 -2.6182 5.3732 14 1 1.1480 -3.5096 5.6221 15 6 1.2658 -1.9749 4.0524 16 7 3.1706 -2.8956 5.2543 17 6 3.7298 -4.0758 4.8426 18 1 3.0990 -4.8782 4.4896 19 6 5.1076 -4.2408 4.8789 20 7 5.8683 -3.3083 5.4120 21 14 5.8822 -5.7863 4.1712 22 1 6.0905 -6.7775 5.2571 23 1 4.9824 -6.3634 3.1402 24 1 7.1892 -5.4467 3.5533 25 6 3.9068 -1.6887 5.6602 26 6 2.0323 -0.7105 -1.2305 27 6 2.9232 -0.0788 -2.0779 28 6 3.3874 -0.7321 -3.2043 29 6 2.9532 -2.0135 -3.4883 30 6 2.0586 -2.6432 -2.6434 31 6 1.5979 -1.9916 -1.5147 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1300 1.4424 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.2763 0.6227 2.5402 39 1 3.2206 0.8365 4.5165 40 1 1.5034 0.6472 4.9500 41 1 0.7006 -0.9574 6.3813 42 1 1.7595 -1.9323 7.4587 43 1 1.2182 -2.7360 3.2736 44 1 0.2804 -1.5288 4.1867 45 1 6.8311 -3.4238 5.4377 46 1 4.5527 -1.9143 6.5088 47 1 4.5027 -1.3179 4.8263 48 1 3.2596 0.9237 -1.8581 49 1 4.0866 -0.2401 -3.8643 50 1 3.3133 -2.5225 -4.3701 51 1 1.7197 -3.6445 -2.8651 52 1 0.8987 -2.4835 -0.8547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047195153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:44 Heat of formation + Delta-G solvation = 15.603212 kcal Electronic energy + Delta-G solvation = -31585.750072 eV Core-core repulsion = 27743.461861 eV Total energy + Delta-G solvation = -3842.288211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.61280 -39.53633 -38.20986 -35.21026 -34.48352 -32.74257 -31.00036 -30.65036 -30.04400 -29.19573 -28.12803 -27.56707 -25.26703 -24.10746 -23.08854 -22.46929 -22.14241 -20.82419 -19.55926 -19.28987 -18.49655 -17.26209 -16.87628 -16.50810 -15.86162 -15.13235 -14.96274 -14.69892 -14.40207 -14.18586 -14.06146 -13.93317 -13.53583 -13.44196 -12.98945 -12.81209 -12.68072 -12.45998 -12.30415 -12.17328 -11.97689 -11.84221 -11.77964 -11.72148 -11.57942 -11.51940 -11.16986 -10.85784 -10.71742 -10.68470 -10.61503 -10.48821 -9.93768 -9.78806 -9.69885 -9.60997 -9.36357 -9.20754 -8.80263 -8.64043 -8.52756 -8.49239 -6.72724 -5.58883 -2.93305 1.40460 1.50591 3.01858 3.45608 3.48961 3.55320 3.58205 3.94492 4.41276 4.60793 4.66875 4.81917 5.00204 5.04756 5.08085 5.18098 5.25864 5.26331 5.36664 5.43772 5.46084 5.53068 5.58733 5.61777 5.67141 5.68819 5.70493 5.89273 5.92124 5.92538 6.00268 6.04565 6.07454 6.10279 6.10982 6.13827 6.16214 6.25472 6.52435 6.58404 6.59355 6.65383 6.68012 6.73612 6.91877 6.92842 7.01949 7.06620 7.12911 7.57149 7.73730 7.89492 7.92649 8.36096 8.65609 9.32364 9.93323 10.59118 11.51146 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010384 B = 0.004080 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.786230 B = 6860.758418 C = 8622.185083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C -0.142 4.142 4 C 0.515 3.485 5 O -0.513 6.513 6 N -0.726 5.726 7 C 0.148 3.852 8 H 0.112 0.888 9 C -0.112 4.112 10 C -0.117 4.117 11 H 0.081 0.919 12 C -0.128 4.128 13 C 0.157 3.843 14 H 0.064 0.936 15 C -0.134 4.134 16 N -0.594 5.594 17 C -0.219 4.219 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.177 3.823 26 C -0.057 4.057 27 C -0.117 4.117 28 C -0.125 4.125 29 C -0.123 4.123 30 C -0.121 4.121 31 C -0.086 4.086 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.388 0.612 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.250 0.750 46 H 0.058 0.942 47 H 0.033 0.967 48 H 0.124 0.876 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 12.423 -11.266 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C -0.200 4.200 4 C 0.299 3.701 5 O -0.387 6.387 6 N -0.377 5.377 7 C 0.045 3.955 8 H 0.130 0.870 9 C -0.150 4.150 10 C -0.137 4.137 11 H 0.100 0.900 12 C -0.166 4.166 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.175 4.175 16 N -0.318 5.318 17 C -0.347 4.347 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.570 5.570 21 Si 0.738 3.262 22 H -0.219 1.219 23 H -0.207 1.207 24 H -0.218 1.218 25 C 0.053 3.947 26 C -0.057 4.057 27 C -0.135 4.135 28 C -0.143 4.143 29 C -0.141 4.141 30 C -0.139 4.139 31 C -0.104 4.104 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.221 0.779 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.142 0.858 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.378 11.547 -11.380 19.806 hybrid contribution 0.305 -0.427 -0.378 0.647 sum -11.073 11.119 -11.758 19.609 Atomic orbital electron populations 1.21851 0.91879 1.02962 1.02582 1.19749 0.97158 0.95987 0.91888 1.21942 1.02014 0.93358 1.02636 1.20235 0.80234 0.85448 0.84156 1.90821 1.38455 1.23185 1.86190 1.46200 1.57467 1.27833 1.06187 1.21159 1.00247 0.91847 0.82282 0.86990 1.21965 1.00181 0.97297 0.95532 1.22819 0.97938 0.97480 0.95479 0.90030 1.22983 0.96859 0.97600 0.99195 1.21517 0.87690 0.94576 0.91423 0.91774 1.22590 0.96486 0.97923 1.00527 1.44608 0.98652 1.10889 1.77648 1.19001 0.90178 0.90735 1.34779 0.90698 1.24724 0.96155 0.98179 1.01191 1.69937 1.03809 1.33709 1.49568 0.86163 0.78908 0.82589 0.78570 1.21851 1.20660 1.21772 1.21319 0.90657 0.83699 0.99054 1.19286 0.97415 0.94628 0.94394 1.21101 0.97261 1.00269 0.94864 1.21059 1.00234 0.95350 0.97662 1.21107 0.97987 0.95329 0.99697 1.21100 0.98068 0.99690 0.95062 1.20924 0.99421 0.93903 0.96111 0.91768 0.91422 0.91807 0.91579 0.91243 0.91797 0.77861 0.92292 0.92863 0.92306 0.91867 0.92399 0.93886 0.93983 0.92419 0.94866 0.85839 0.86334 0.86431 0.86244 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.16 37.16 0.30 -1.00 16 2 C -0.04 -0.54 0.72 -156.81 -0.11 -0.65 16 3 C -0.14 -1.34 7.01 37.15 0.26 -1.08 16 4 C 0.52 8.49 6.36 -10.99 -0.07 8.42 16 5 O -0.51 -11.37 14.99 5.56 0.08 -11.29 16 6 N -0.73 -10.72 4.88 -53.79 -0.26 -10.98 16 7 C 0.15 2.69 2.08 -67.92 -0.14 2.55 16 8 H 0.11 2.72 5.38 -51.93 -0.28 2.44 16 9 C -0.11 -1.76 4.96 -26.21 -0.13 -1.89 16 10 C -0.12 -2.11 4.32 -87.93 -0.38 -2.49 16 11 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 12 C -0.13 -2.20 6.18 -24.30 -0.15 -2.35 16 13 C 0.16 3.21 4.30 -65.61 -0.28 2.93 16 14 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.13 -2.50 5.28 -26.28 -0.14 -2.64 16 16 N -0.59 -15.08 2.42 -161.37 -0.39 -15.47 16 17 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.19 5.46 -17.43 -0.10 -0.29 16 20 N -0.92 -27.82 10.44 55.49 0.58 -27.24 16 21 Si 0.91 23.48 29.56 -169.99 -5.02 18.45 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 C 0.18 4.27 4.15 -2.83 -0.01 4.25 16 26 C -0.06 -0.78 4.32 -104.62 -0.45 -1.23 16 27 C -0.12 -1.46 8.99 -39.58 -0.36 -1.81 16 28 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 29 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 30 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 31 C -0.09 -1.22 8.16 -39.59 -0.32 -1.55 16 32 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.67 7.07 -51.93 -0.37 0.30 16 35 H 0.07 0.69 7.24 -51.93 -0.38 0.32 16 36 H 0.07 0.53 7.78 -51.93 -0.40 0.13 16 37 H 0.06 0.50 7.33 -51.93 -0.38 0.12 16 38 H 0.39 4.31 7.49 -40.82 -0.31 4.00 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 41 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.06 1.57 6.98 -51.93 -0.36 1.21 16 47 H 0.03 0.89 6.57 -51.93 -0.34 0.55 16 48 H 0.12 1.28 5.91 -52.49 -0.31 0.97 16 49 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 50 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 51 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 52 H 0.12 1.70 7.22 -52.49 -0.38 1.32 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -34.26 394.26 -11.00 -45.26 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.50 Total: 6.31 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.43 Total: -10.98 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.07 Total: -53.70 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.26 -11.00 -45.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047195153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.864 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds