Wall clock time and date at job start Wed Apr 1 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47267 * 2 1 4 4 C 1.50703 * 109.47211 * 120.00127 * 2 1 3 5 5 O 1.21283 * 120.00024 * 115.65262 * 4 2 1 6 6 N 1.34773 * 119.99824 * 295.65563 * 4 2 1 7 7 C 1.46506 * 119.99838 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.32487 * 34.64545 * 7 6 4 9 9 C 1.53032 * 109.32498 * 154.10821 * 7 6 4 10 10 C 1.53969 * 108.82496 * 175.67709 * 9 7 6 11 11 H 1.09002 * 112.99221 * 169.00119 * 10 9 7 12 12 C 1.55421 * 106.41933 * 293.82139 * 10 9 7 13 13 C 1.55167 * 100.35411 * 73.37686 * 12 10 9 14 14 H 1.09004 * 113.05084 * 162.99377 * 13 12 10 15 15 C 1.52987 * 109.32587 * 275.00006 * 7 6 4 16 16 N 1.47796 * 104.25317 * 40.55652 * 13 12 10 17 17 C 1.36931 * 125.85551 * 153.50817 * 16 13 12 18 18 H 1.08001 * 120.00607 * 5.22430 * 17 16 13 19 19 C 1.38810 * 119.99783 * 185.22445 * 17 16 13 20 20 N 1.31621 * 120.00166 * 5.67036 * 19 17 16 21 21 Si 1.86802 * 120.00251 * 185.67242 * 19 17 16 22 22 H 1.48498 * 109.47263 * 265.00677 * 21 19 17 23 23 H 1.48507 * 109.46818 * 25.00525 * 21 19 17 24 24 H 1.48499 * 109.47380 * 144.99944 * 21 19 17 25 25 C 1.47083 * 108.28350 * 333.76866 * 16 13 12 26 26 C 1.50707 * 109.47132 * 239.99699 * 2 1 3 27 27 C 1.38234 * 119.99409 * 125.81645 * 26 2 1 28 28 C 1.38239 * 119.99623 * 179.79059 * 27 26 2 29 29 C 1.38241 * 119.99741 * 0.46583 * 28 27 26 30 30 C 1.38226 * 120.00042 * 359.76779 * 29 28 27 31 31 C 1.38229 * 120.00244 * 306.09285 * 26 2 1 32 32 H 1.08997 * 109.47027 * 299.99539 * 1 2 3 33 33 H 1.08998 * 109.47302 * 60.00093 * 1 2 3 34 34 H 1.09005 * 109.46805 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46988 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47370 * 300.00373 * 3 2 1 37 37 H 1.09004 * 109.47071 * 60.00316 * 3 2 1 38 38 H 0.96993 * 120.00453 * 359.97438 * 6 4 2 39 39 H 1.09001 * 109.57758 * 295.48730 * 9 7 6 40 40 H 1.09003 * 109.57411 * 55.74329 * 9 7 6 41 41 H 1.09007 * 111.22998 * 315.60397 * 12 10 9 42 42 H 1.08995 * 111.23815 * 191.16208 * 12 10 9 43 43 H 1.08998 * 109.52971 * 64.75558 * 15 7 6 44 44 H 1.08995 * 109.59028 * 304.56807 * 15 7 6 45 45 H 0.97000 * 120.00210 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.97133 * 120.22126 * 25 16 13 47 47 H 1.08999 * 109.97746 * 241.50613 * 25 16 13 48 48 H 1.07999 * 120.00803 * 0.02562 * 27 26 2 49 49 H 1.08005 * 120.00214 * 180.25054 * 28 27 26 50 50 H 1.08003 * 119.99329 * 179.79051 * 29 28 27 51 51 H 1.08004 * 119.99891 * 180.02562 * 30 29 28 52 52 H 1.08002 * 119.99859 * 359.97438 * 31 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6632 -1.7405 1.1209 6 7 1.7805 -0.2012 2.4526 7 6 2.2684 -0.8921 3.6488 8 1 3.2309 -1.3550 3.4307 9 6 2.4431 0.1206 4.7828 10 6 2.8508 -0.6321 6.0626 11 1 3.1780 0.0331 6.8617 12 6 1.6345 -1.5142 6.4599 13 6 1.7238 -2.6182 5.3732 14 1 1.1480 -3.5096 5.6221 15 6 1.2658 -1.9749 4.0524 16 7 3.1706 -2.8956 5.2543 17 6 3.7298 -4.0758 4.8426 18 1 3.0990 -4.8782 4.4896 19 6 5.1076 -4.2408 4.8789 20 7 5.8683 -3.3083 5.4120 21 14 5.8822 -5.7863 4.1712 22 1 6.0905 -6.7775 5.2571 23 1 4.9824 -6.3634 3.1402 24 1 7.1892 -5.4467 3.5533 25 6 3.9068 -1.6887 5.6602 26 6 2.0323 -0.7105 -1.2305 27 6 2.9232 -0.0788 -2.0779 28 6 3.3874 -0.7321 -3.2043 29 6 2.9532 -2.0135 -3.4883 30 6 2.0586 -2.6432 -2.6434 31 6 1.5979 -1.9916 -1.5147 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1300 1.4424 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.2763 0.6227 2.5402 39 1 3.2206 0.8365 4.5165 40 1 1.5034 0.6472 4.9500 41 1 0.7006 -0.9574 6.3813 42 1 1.7595 -1.9323 7.4587 43 1 1.2182 -2.7360 3.2736 44 1 0.2804 -1.5288 4.1867 45 1 6.8311 -3.4238 5.4377 46 1 4.5527 -1.9143 6.5088 47 1 4.5027 -1.3179 4.8263 48 1 3.2596 0.9237 -1.8581 49 1 4.0866 -0.2401 -3.8643 50 1 3.3133 -2.5225 -4.3701 51 1 1.7197 -3.6445 -2.8651 52 1 0.8987 -2.4835 -0.8547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047195153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:43 Heat of formation + Delta-G solvation = -5.207503 kcal Electronic energy + Delta-G solvation = -31586.652492 eV Core-core repulsion = 27743.461861 eV Total energy + Delta-G solvation = -3843.190632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.85896 -40.91373 -39.43555 -36.26691 -36.06764 -34.64438 -32.36461 -31.95066 -31.42838 -30.58522 -29.58995 -28.31949 -27.21380 -25.13728 -24.91918 -23.63273 -23.14150 -22.12641 -21.28024 -20.68737 -19.87968 -18.95656 -18.21667 -17.65425 -17.30123 -16.59597 -16.30423 -16.18214 -15.88829 -15.43457 -15.35872 -15.17973 -14.95465 -14.53004 -14.35586 -14.16442 -13.87944 -13.67766 -13.50019 -13.40696 -13.26553 -13.23222 -13.12157 -13.01346 -13.00231 -12.66855 -12.61997 -12.51624 -12.46095 -12.14360 -11.93743 -11.75426 -11.66675 -11.63061 -11.31870 -11.16225 -10.99676 -10.70665 -10.55314 -9.92814 -9.78908 -9.62548 -8.83090 -7.83430 -5.17350 0.42720 0.52017 1.34981 1.38772 1.46596 1.75095 2.25644 2.46260 2.93491 3.32705 3.48339 3.65375 3.75242 3.81869 3.89717 3.97033 4.05665 4.14465 4.15615 4.19987 4.25585 4.39131 4.44226 4.53378 4.57140 4.62227 4.65167 4.67587 4.75347 4.80899 4.83121 4.84238 4.84720 4.90339 5.10195 5.11022 5.14226 5.18351 5.21859 5.25674 5.29383 5.35614 5.45701 5.48937 5.51386 5.57598 5.61406 5.67058 5.70142 5.73671 5.86398 6.12468 6.23396 6.70891 7.12792 7.44388 7.81750 8.45540 9.24175 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010384 B = 0.004080 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.786230 B = 6860.758418 C = 8622.185083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 C -0.140 4.140 4 C 0.510 3.490 5 O -0.582 6.582 6 N -0.708 5.708 7 C 0.155 3.845 8 H 0.042 0.958 9 C -0.101 4.101 10 C -0.106 4.106 11 H 0.110 0.890 12 C -0.110 4.110 13 C 0.139 3.861 14 H 0.059 0.941 15 C -0.121 4.121 16 N -0.613 5.613 17 C -0.226 4.226 18 H 0.067 0.933 19 C -0.064 4.064 20 N -0.946 5.946 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.281 1.281 24 H -0.296 1.296 25 C 0.186 3.814 26 C -0.075 4.075 27 C -0.127 4.127 28 C -0.130 4.130 29 C -0.130 4.130 30 C -0.138 4.138 31 C -0.111 4.111 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.413 0.587 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.088 0.912 45 H 0.243 0.757 46 H 0.015 0.985 47 H -0.010 1.010 48 H 0.145 0.855 49 H 0.146 0.854 50 H 0.142 0.858 51 H 0.129 0.871 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 15.755 -11.514 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.040 4.040 3 C -0.197 4.197 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.359 5.359 7 C 0.050 3.950 8 H 0.060 0.940 9 C -0.138 4.138 10 C -0.125 4.125 11 H 0.128 0.872 12 C -0.148 4.148 13 C 0.032 3.968 14 H 0.077 0.923 15 C -0.162 4.162 16 N -0.337 5.337 17 C -0.356 4.356 18 H 0.085 0.915 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.791 3.209 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.223 1.223 25 C 0.061 3.939 26 C -0.075 4.075 27 C -0.144 4.144 28 C -0.148 4.148 29 C -0.148 4.148 30 C -0.156 4.156 31 C -0.129 4.129 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.251 0.749 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.033 0.967 47 H 0.008 0.992 48 H 0.163 0.837 49 H 0.164 0.836 50 H 0.160 0.840 51 H 0.147 0.853 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.054 14.928 -11.613 23.564 hybrid contribution 1.100 -1.527 -0.364 1.916 sum -12.954 13.402 -11.977 22.156 Atomic orbital electron populations 1.21873 0.89666 1.02575 1.04764 1.19776 0.98765 0.96784 0.88626 1.21992 1.01173 0.91452 1.05108 1.21145 0.78855 0.84638 0.85710 1.90797 1.41597 1.26439 1.87203 1.45933 1.56967 1.28222 1.04822 1.20765 0.96951 0.92771 0.84470 0.94003 1.21906 1.02968 0.96265 0.92694 1.22775 0.95880 0.96360 0.97519 0.87154 1.22939 0.98478 0.96008 0.97370 1.21883 0.84762 0.96134 0.93987 0.92269 1.22409 0.98733 0.97102 0.97908 1.44835 1.01317 1.10285 1.77310 1.19259 0.90551 0.91938 1.33846 0.91503 1.25434 0.96783 1.01012 1.02462 1.70150 1.03333 1.35155 1.50987 0.85296 0.77569 0.79933 0.78068 1.20494 1.20687 1.22279 1.21058 0.91995 0.85181 0.95632 1.19582 0.97957 0.94656 0.95325 1.21444 0.96749 1.01356 0.94880 1.21476 1.00173 0.95324 0.97809 1.21448 0.97410 0.95716 1.00210 1.21359 0.98689 1.00393 0.95199 1.21012 1.00304 0.94890 0.96718 0.89413 0.89332 0.93551 0.93008 0.88660 0.89479 0.74944 0.91748 0.87520 0.87306 0.92113 0.96596 0.89324 0.94745 0.96660 0.99226 0.83723 0.83604 0.84048 0.85309 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.16 71.98 0.59 -1.63 16 2 C -0.04 -0.84 0.72 -53.67 -0.04 -0.87 16 3 C -0.14 -2.21 7.01 71.98 0.50 -1.71 16 4 C 0.51 16.98 6.36 87.66 0.56 17.53 16 5 O -0.58 -27.62 14.99 -3.04 -0.05 -27.66 16 6 N -0.71 -19.73 4.88 -442.49 -2.16 -21.88 16 7 C 0.16 5.57 2.08 45.00 0.09 5.67 16 8 H 0.04 2.15 5.38 -2.39 -0.01 2.14 16 9 C -0.10 -2.81 4.96 30.93 0.15 -2.65 16 10 C -0.11 -3.56 4.32 -9.05 -0.04 -3.60 16 11 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 12 C -0.11 -3.40 6.18 32.17 0.20 -3.20 16 13 C 0.14 5.66 4.30 45.78 0.20 5.86 16 14 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 15 C -0.12 -4.41 5.28 30.89 0.16 -4.24 16 16 N -0.61 -32.61 2.42 -664.45 -1.61 -34.22 16 17 C -0.23 -13.76 10.28 84.03 0.86 -12.90 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.06 -3.97 5.46 84.86 0.46 -3.50 16 20 N -0.95 -60.64 10.44 21.65 0.23 -60.41 16 21 Si 0.96 50.75 29.56 68.60 2.03 52.77 16 22 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 25 C 0.19 9.35 4.15 86.85 0.36 9.71 16 26 C -0.07 -2.04 4.32 -19.87 -0.09 -2.13 16 27 C -0.13 -3.02 8.99 22.27 0.20 -2.82 16 28 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 29 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 30 C -0.14 -3.74 10.05 22.27 0.22 -3.52 16 31 C -0.11 -3.35 8.16 22.27 0.18 -3.17 16 32 H 0.09 1.05 7.87 -2.39 -0.02 1.03 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 0.95 7.07 -2.38 -0.02 0.93 16 35 H 0.05 0.98 7.24 -2.39 -0.02 0.96 16 36 H 0.09 1.05 7.78 -2.39 -0.02 1.04 16 37 H 0.09 0.96 7.33 -2.38 -0.02 0.95 16 38 H 0.41 7.38 7.49 -92.71 -0.69 6.69 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.97 7.98 -2.39 -0.02 1.95 16 41 H 0.11 2.38 7.75 -2.38 -0.02 2.37 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.09 2.43 8.00 -2.39 -0.02 2.41 16 45 H 0.24 15.22 8.31 -92.71 -0.77 14.44 16 46 H 0.02 0.88 6.98 -2.39 -0.02 0.86 16 47 H -0.01 -0.60 6.57 -2.39 -0.02 -0.62 16 48 H 0.15 2.70 5.91 -2.91 -0.02 2.68 16 49 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 50 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 51 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 52 H 0.10 3.26 7.22 -2.91 -0.02 3.24 16 Total: -1.00 -86.07 394.26 3.69 -82.38 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.22 Total: 21.69 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.03 Total: -12.67 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -3.54 Total: -116.52 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.03 Total: 52.77 kcal Total: -86.07 3.69 -82.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047195153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.176 kcal (2) G-P(sol) polarization free energy of solvation -86.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds