Wall clock time and date at job start Wed Apr 1 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46816 * 2 1 4 4 H 1.08992 * 109.47674 * 305.18127 * 3 2 1 5 5 C 1.53007 * 109.46808 * 185.17638 * 3 2 1 6 6 C 1.50703 * 109.46709 * 65.00856 * 5 3 2 7 7 C 1.38235 * 119.99668 * 269.72245 * 6 5 3 8 8 C 1.38235 * 120.00061 * 179.77267 * 7 6 5 9 9 C 1.38235 * 119.99791 * 0.50141 * 8 7 6 10 10 C 1.38236 * 120.00059 * 359.74930 * 9 8 7 11 11 C 1.38234 * 120.00007 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46773 * 65.18524 * 3 2 1 13 13 O 1.21280 * 120.00295 * 31.10781 * 12 3 2 14 14 N 1.34780 * 119.99729 * 211.11120 * 12 3 2 15 15 C 1.46739 * 125.32832 * 185.00833 * 14 12 3 16 16 C 1.53930 * 106.72012 * 161.65801 * 15 14 12 17 17 H 1.09000 * 113.01508 * 150.83314 * 16 15 14 18 18 C 1.54161 * 109.08876 * 278.52993 * 16 15 14 19 19 N 1.46782 * 106.52519 * 138.44624 * 18 16 15 20 20 C 1.36940 * 125.33676 * 161.35415 * 19 18 16 21 21 H 1.07994 * 119.99986 * 188.27814 * 20 19 18 22 22 C 1.38812 * 119.99862 * 8.55644 * 20 19 18 23 23 N 1.31622 * 120.00259 * 15.41361 * 22 20 19 24 24 Si 1.86802 * 119.99707 * 195.41253 * 22 20 19 25 25 H 1.48494 * 109.47026 * 94.98605 * 24 22 20 26 26 H 1.48498 * 109.46794 * 214.98416 * 24 22 20 27 27 H 1.48499 * 109.47265 * 334.98191 * 24 22 20 28 28 C 1.46665 * 109.32426 * 341.09322 * 19 18 16 29 29 C 1.53727 * 107.94324 * 0.80576 * 28 19 18 30 30 H 1.09006 * 112.56314 * 139.71853 * 29 28 19 31 31 C 1.46642 * 125.32824 * 5.01118 * 14 12 3 32 32 H 1.09000 * 109.47651 * 304.21824 * 1 2 3 33 33 H 1.08999 * 109.47421 * 64.22181 * 1 2 3 34 34 H 1.09003 * 109.47402 * 184.21491 * 1 2 3 35 35 H 1.09006 * 109.47201 * 240.00493 * 2 1 3 36 36 H 1.08991 * 109.47612 * 120.00085 * 2 1 3 37 37 H 1.09003 * 109.46846 * 185.00290 * 5 3 2 38 38 H 1.08995 * 109.47695 * 305.00486 * 5 3 2 39 39 H 1.07999 * 120.00461 * 359.97438 * 7 6 5 40 40 H 1.08001 * 120.00260 * 180.23116 * 8 7 6 41 41 H 1.08006 * 119.99933 * 179.73201 * 9 8 7 42 42 H 1.08002 * 120.00304 * 179.97438 * 10 9 8 43 43 H 1.07999 * 120.00347 * 179.97438 * 11 10 9 44 44 H 1.08997 * 110.00794 * 42.34631 * 15 14 12 45 45 H 1.08997 * 110.05016 * 280.99529 * 15 14 12 46 46 H 1.08994 * 110.18168 * 19.13103 * 18 16 15 47 47 H 1.08999 * 109.96830 * 257.64958 * 18 16 15 48 48 H 0.96991 * 119.99944 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.77683 * 120.42841 * 28 19 18 50 50 H 1.09005 * 109.77164 * 241.18773 * 28 19 18 51 51 H 1.09001 * 109.76135 * 61.19199 * 31 14 12 52 52 H 1.09007 * 109.76096 * 300.47507 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6028 1.9825 -0.8399 5 6 3.5644 1.4445 -0.1302 6 6 3.9545 0.8839 -1.4735 7 6 4.1806 -0.4723 -1.6172 8 6 4.5339 -0.9873 -2.8504 9 6 4.6711 -0.1447 -3.9377 10 6 4.4500 1.2121 -3.7928 11 6 4.0912 1.7264 -2.5609 12 6 1.6450 2.1148 1.2897 13 8 1.5494 1.4638 2.3084 14 7 1.3982 3.4397 1.3109 15 6 1.1087 4.2297 2.5131 16 6 1.3560 5.7036 2.1445 17 1 0.7354 6.3953 2.7143 18 6 2.8659 6.0002 2.2376 19 7 3.1995 6.8361 1.0782 20 6 4.3201 7.6141 0.9588 21 1 4.4170 8.2977 0.1284 22 6 5.3342 7.5198 1.9021 23 7 5.3730 6.4944 2.7264 24 14 6.6436 8.8483 2.0015 25 1 6.2599 9.8453 3.0329 26 1 7.9452 8.2339 2.3670 27 1 6.7668 9.5216 0.6837 28 6 2.1475 6.7028 0.0649 29 6 1.0777 5.7462 0.6161 30 1 0.0644 6.0721 0.3812 31 6 1.3767 4.3172 0.1362 32 1 -0.3634 0.5779 0.8497 33 1 -0.3634 0.4469 -0.9254 34 1 -0.3634 -1.0249 0.0755 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 3.9353 2.4656 -0.0410 38 1 3.9973 0.8305 0.6595 39 1 4.0781 -1.1300 -0.7667 40 1 4.7069 -2.0473 -2.9635 41 1 4.9513 -0.5465 -4.9002 42 1 4.5576 1.8705 -4.6422 43 1 3.9189 2.7865 -2.4476 44 1 1.7731 3.9316 3.3241 45 1 0.0699 4.0891 2.8115 46 1 3.4344 5.0708 2.2036 47 1 3.0835 6.5378 3.1605 48 1 6.0813 6.4288 3.3857 49 1 1.7027 7.6775 -0.1354 50 1 2.5696 6.2942 -0.8533 51 1 0.5993 3.9899 -0.5542 52 1 2.3463 4.2908 -0.3613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049091801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:17 Heat of formation + Delta-G solvation = 3.316292 kcal Electronic energy + Delta-G solvation = -31120.730532 eV Core-core repulsion = 27277.909520 eV Total energy + Delta-G solvation = -3842.821012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.48163 -39.39532 -38.33653 -35.33699 -34.90246 -32.28556 -32.08315 -30.94748 -30.47411 -29.58582 -28.74396 -25.77768 -25.47615 -24.53898 -23.27829 -22.63439 -21.70261 -20.89619 -20.17965 -19.36173 -18.66835 -17.38897 -16.82043 -16.62713 -16.02173 -15.52446 -15.19862 -14.89286 -14.68173 -14.42636 -13.97206 -13.79275 -13.65484 -13.50665 -13.28236 -13.19872 -13.15909 -12.68240 -12.50621 -12.49270 -11.98758 -11.91246 -11.84012 -11.71320 -11.55402 -11.22080 -11.09694 -11.05965 -10.88346 -10.86998 -10.83275 -10.66592 -10.43816 -10.16083 -10.06330 -9.91725 -9.67824 -9.46893 -8.94873 -8.71730 -8.58769 -8.29505 -6.84899 -5.79243 -3.10188 1.28949 1.35305 2.85985 3.27136 3.38083 3.44160 3.46139 3.74761 4.46572 4.50157 4.67908 4.78734 4.86123 4.88243 4.94107 5.03352 5.05168 5.12317 5.20347 5.29332 5.35229 5.43911 5.47442 5.48889 5.52374 5.58528 5.61810 5.66804 5.69084 5.80921 5.86578 5.90876 5.96609 5.99468 6.03434 6.12422 6.15919 6.20892 6.21984 6.28565 6.29451 6.41209 6.44754 6.46144 6.55777 6.62352 6.66739 6.81136 6.96002 7.41074 7.57256 7.74967 7.80693 8.21485 8.42636 9.15706 9.78695 10.43732 11.33528 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003717 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.536005 B = 7531.976625 C = 9196.119020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.088 0.912 5 C -0.073 4.073 6 C -0.071 4.071 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.128 4.128 10 C -0.118 4.118 11 C -0.112 4.112 12 C 0.536 3.464 13 O -0.545 6.545 14 N -0.606 5.606 15 C 0.119 3.881 16 C -0.123 4.123 17 H 0.094 0.906 18 C 0.184 3.816 19 N -0.599 5.599 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.002 4.002 23 N -0.911 5.911 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.145 3.855 29 C -0.109 4.109 30 H 0.090 0.910 31 C 0.112 3.888 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.253 0.747 49 H 0.025 0.975 50 H 0.024 0.976 51 H 0.060 0.940 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -12.402 -10.547 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.106 0.894 5 C -0.111 4.111 6 C -0.071 4.071 7 C -0.133 4.133 8 C -0.140 4.140 9 C -0.146 4.146 10 C -0.136 4.136 11 C -0.130 4.130 12 C 0.325 3.675 13 O -0.422 6.422 14 N -0.339 5.339 15 C -0.004 4.004 16 C -0.143 4.143 17 H 0.112 0.888 18 C 0.059 3.941 19 N -0.325 5.325 20 C -0.364 4.364 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.557 5.557 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.019 3.981 29 C -0.128 4.128 30 H 0.108 0.892 31 C -0.011 4.011 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.078 0.922 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.314 -12.806 -9.900 18.196 hybrid contribution 0.797 0.822 0.002 1.145 sum -7.517 -11.983 -9.898 17.265 Atomic orbital electron populations 1.21776 0.95831 1.01720 1.01576 1.21518 0.96002 0.94369 1.02969 1.21295 0.96618 0.97734 0.95849 0.89362 1.20531 0.93274 1.02926 0.94388 1.19798 0.98634 0.93601 0.95075 1.21094 0.99852 0.94780 0.97586 1.21111 1.00256 0.99599 0.93045 1.21120 1.00954 0.93831 0.98676 1.21148 0.99642 0.95382 0.97446 1.21157 0.99440 0.99990 0.92459 1.20149 0.76436 0.80328 0.90629 1.90662 1.52740 1.63327 1.35501 1.48213 1.69423 1.07049 1.09179 1.21809 0.99922 0.90407 0.88229 1.23310 1.01667 0.94450 0.94860 0.88804 1.21111 0.86262 0.95215 0.91523 1.44247 1.21402 1.53048 1.13816 1.18984 0.93933 1.14032 1.09474 0.90515 1.24777 0.97902 0.97803 0.99498 1.70005 1.34395 1.27933 1.23381 0.86192 0.80934 0.81433 0.77781 1.21584 1.21841 1.20554 1.21149 0.88940 0.95411 0.92639 1.22730 0.99566 0.93979 0.96559 0.89196 1.21992 1.01415 0.89680 0.87970 0.92537 0.93105 0.92666 0.90853 0.90685 0.89728 0.90085 0.86019 0.86311 0.86424 0.86139 0.85763 0.90506 0.92545 0.94268 0.92893 0.93658 0.95725 0.95780 0.92180 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.78 37.15 0.36 -1.33 16 2 C -0.11 -1.31 4.87 -26.73 -0.13 -1.44 16 3 C -0.09 -1.23 1.83 -91.77 -0.17 -1.39 16 4 H 0.09 1.06 7.05 -51.93 -0.37 0.70 16 5 C -0.07 -0.99 4.82 -27.88 -0.13 -1.12 16 6 C -0.07 -0.86 4.71 -104.62 -0.49 -1.35 16 7 C -0.12 -1.25 7.88 -39.58 -0.31 -1.57 16 8 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 9 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 10 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 11 C -0.11 -1.33 9.70 -39.58 -0.38 -1.72 16 12 C 0.54 8.80 5.92 -10.98 -0.07 8.74 16 13 O -0.54 -10.58 16.05 5.56 0.09 -10.49 16 14 N -0.61 -9.81 3.30 -172.38 -0.57 -10.38 16 15 C 0.12 1.99 5.99 -3.43 -0.02 1.97 16 16 C -0.12 -2.14 4.19 -88.24 -0.37 -2.51 16 17 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 18 C 0.18 4.25 4.62 -3.28 -0.02 4.23 16 19 N -0.60 -14.54 3.38 -171.72 -0.58 -15.12 16 20 C -0.24 -6.38 10.19 -15.06 -0.15 -6.54 16 21 H 0.08 2.02 7.88 -52.49 -0.41 1.60 16 22 C 0.00 -0.06 5.33 -17.43 -0.09 -0.16 16 23 N -0.91 -26.40 10.82 55.49 0.60 -25.80 16 24 Si 0.91 21.75 29.58 -169.99 -5.03 16.72 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.14 2.76 6.62 -3.57 -0.02 2.74 16 29 C -0.11 -1.69 4.02 -88.60 -0.36 -2.05 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 C 0.11 1.64 5.36 -3.61 -0.02 1.62 16 32 H 0.06 0.74 7.01 -51.93 -0.36 0.37 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.77 5.93 -51.93 -0.31 0.47 16 36 H 0.07 0.97 7.67 -51.93 -0.40 0.58 16 37 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 38 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.12 1.19 8.01 -52.49 -0.42 0.77 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 1.03 7.37 -51.93 -0.38 0.64 16 47 H 0.05 1.38 7.33 -51.93 -0.38 1.00 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 51 H 0.06 0.72 7.95 -51.93 -0.41 0.30 16 52 H 0.07 1.17 7.29 -51.93 -0.38 0.79 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -31.51 404.85 -11.78 -43.29 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.83 Total: 2.44 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.57 Total: -6.77 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.55 Total: -51.30 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.51 -11.78 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049091801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.605 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds