Wall clock time and date at job start Wed Apr 1 2020 02:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46816 * 2 1 4 4 H 1.08992 * 109.47674 * 305.18127 * 3 2 1 5 5 C 1.53007 * 109.46808 * 185.17638 * 3 2 1 6 6 C 1.50703 * 109.46709 * 65.00856 * 5 3 2 7 7 C 1.38235 * 119.99668 * 269.72245 * 6 5 3 8 8 C 1.38235 * 120.00061 * 179.77267 * 7 6 5 9 9 C 1.38235 * 119.99791 * 0.50141 * 8 7 6 10 10 C 1.38236 * 120.00059 * 359.74930 * 9 8 7 11 11 C 1.38234 * 120.00007 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46773 * 65.18524 * 3 2 1 13 13 O 1.21280 * 120.00295 * 31.10781 * 12 3 2 14 14 N 1.34780 * 119.99729 * 211.11120 * 12 3 2 15 15 C 1.46739 * 125.32832 * 185.00833 * 14 12 3 16 16 C 1.53930 * 106.72012 * 161.65801 * 15 14 12 17 17 H 1.09000 * 113.01508 * 150.83314 * 16 15 14 18 18 C 1.54161 * 109.08876 * 278.52993 * 16 15 14 19 19 N 1.46782 * 106.52519 * 138.44624 * 18 16 15 20 20 C 1.36940 * 125.33676 * 161.35415 * 19 18 16 21 21 H 1.07994 * 119.99986 * 188.27814 * 20 19 18 22 22 C 1.38812 * 119.99862 * 8.55644 * 20 19 18 23 23 N 1.31622 * 120.00259 * 15.41361 * 22 20 19 24 24 Si 1.86802 * 119.99707 * 195.41253 * 22 20 19 25 25 H 1.48494 * 109.47026 * 94.98605 * 24 22 20 26 26 H 1.48498 * 109.46794 * 214.98416 * 24 22 20 27 27 H 1.48499 * 109.47265 * 334.98191 * 24 22 20 28 28 C 1.46665 * 109.32426 * 341.09322 * 19 18 16 29 29 C 1.53727 * 107.94324 * 0.80576 * 28 19 18 30 30 H 1.09006 * 112.56314 * 139.71853 * 29 28 19 31 31 C 1.46642 * 125.32824 * 5.01118 * 14 12 3 32 32 H 1.09000 * 109.47651 * 304.21824 * 1 2 3 33 33 H 1.08999 * 109.47421 * 64.22181 * 1 2 3 34 34 H 1.09003 * 109.47402 * 184.21491 * 1 2 3 35 35 H 1.09006 * 109.47201 * 240.00493 * 2 1 3 36 36 H 1.08991 * 109.47612 * 120.00085 * 2 1 3 37 37 H 1.09003 * 109.46846 * 185.00290 * 5 3 2 38 38 H 1.08995 * 109.47695 * 305.00486 * 5 3 2 39 39 H 1.07999 * 120.00461 * 359.97438 * 7 6 5 40 40 H 1.08001 * 120.00260 * 180.23116 * 8 7 6 41 41 H 1.08006 * 119.99933 * 179.73201 * 9 8 7 42 42 H 1.08002 * 120.00304 * 179.97438 * 10 9 8 43 43 H 1.07999 * 120.00347 * 179.97438 * 11 10 9 44 44 H 1.08997 * 110.00794 * 42.34631 * 15 14 12 45 45 H 1.08997 * 110.05016 * 280.99529 * 15 14 12 46 46 H 1.08994 * 110.18168 * 19.13103 * 18 16 15 47 47 H 1.08999 * 109.96830 * 257.64958 * 18 16 15 48 48 H 0.96991 * 119.99944 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.77683 * 120.42841 * 28 19 18 50 50 H 1.09005 * 109.77164 * 241.18773 * 28 19 18 51 51 H 1.09001 * 109.76135 * 61.19199 * 31 14 12 52 52 H 1.09007 * 109.76096 * 300.47507 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6028 1.9825 -0.8399 5 6 3.5644 1.4445 -0.1302 6 6 3.9545 0.8839 -1.4735 7 6 4.1806 -0.4723 -1.6172 8 6 4.5339 -0.9873 -2.8504 9 6 4.6711 -0.1447 -3.9377 10 6 4.4500 1.2121 -3.7928 11 6 4.0912 1.7264 -2.5609 12 6 1.6450 2.1148 1.2897 13 8 1.5494 1.4638 2.3084 14 7 1.3982 3.4397 1.3109 15 6 1.1087 4.2297 2.5131 16 6 1.3560 5.7036 2.1445 17 1 0.7354 6.3953 2.7143 18 6 2.8659 6.0002 2.2376 19 7 3.1995 6.8361 1.0782 20 6 4.3201 7.6141 0.9588 21 1 4.4170 8.2977 0.1284 22 6 5.3342 7.5198 1.9021 23 7 5.3730 6.4944 2.7264 24 14 6.6436 8.8483 2.0015 25 1 6.2599 9.8453 3.0329 26 1 7.9452 8.2339 2.3670 27 1 6.7668 9.5216 0.6837 28 6 2.1475 6.7028 0.0649 29 6 1.0777 5.7462 0.6161 30 1 0.0644 6.0721 0.3812 31 6 1.3767 4.3172 0.1362 32 1 -0.3634 0.5779 0.8497 33 1 -0.3634 0.4469 -0.9254 34 1 -0.3634 -1.0249 0.0755 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 3.9353 2.4656 -0.0410 38 1 3.9973 0.8305 0.6595 39 1 4.0781 -1.1300 -0.7667 40 1 4.7069 -2.0473 -2.9635 41 1 4.9513 -0.5465 -4.9002 42 1 4.5576 1.8705 -4.6422 43 1 3.9189 2.7865 -2.4476 44 1 1.7731 3.9316 3.3241 45 1 0.0699 4.0891 2.8115 46 1 3.4344 5.0708 2.2036 47 1 3.0835 6.5378 3.1605 48 1 6.0813 6.4288 3.3857 49 1 1.7027 7.6775 -0.1354 50 1 2.5696 6.2942 -0.8533 51 1 0.5993 3.9899 -0.5542 52 1 2.3463 4.2908 -0.3613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049091801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:16 Heat of formation + Delta-G solvation = -12.763765 kcal Electronic energy + Delta-G solvation = -31121.427816 eV Core-core repulsion = 27277.909520 eV Total energy + Delta-G solvation = -3843.518296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.77686 -40.42369 -39.63311 -36.64547 -36.33775 -34.10387 -33.00102 -31.99398 -31.72221 -31.22984 -29.78245 -27.47238 -27.02658 -25.71644 -24.59449 -23.57623 -22.74782 -22.02980 -21.71925 -20.79983 -19.92831 -18.84680 -18.45788 -17.56531 -17.40446 -16.75710 -16.46598 -16.11850 -15.97523 -15.73790 -15.44807 -15.06801 -14.93772 -14.82361 -14.40586 -14.27735 -14.19380 -13.86681 -13.74024 -13.55801 -13.49204 -13.47152 -13.31214 -13.06716 -12.82819 -12.77355 -12.63138 -12.22051 -12.01219 -11.97033 -11.94717 -11.87634 -11.84371 -11.80196 -11.69569 -11.55698 -11.37386 -10.79615 -10.64223 -9.76856 -9.63723 -9.56029 -8.86173 -7.90141 -5.22102 0.44678 0.53540 1.44368 1.46083 1.54923 1.56539 2.02705 2.48834 2.90848 3.25637 3.30137 3.49605 3.57148 3.69546 3.85893 3.89846 3.98617 4.06060 4.07029 4.19361 4.23783 4.24183 4.34276 4.35206 4.41153 4.53143 4.53847 4.60310 4.61738 4.67534 4.72646 4.78835 4.82749 4.88407 4.89985 4.95328 4.99464 5.08358 5.09445 5.17140 5.20765 5.23108 5.30057 5.36752 5.41033 5.48665 5.59002 5.61379 5.66498 5.72346 5.75073 6.15513 6.18670 6.51986 7.07679 7.12111 7.78970 8.42024 9.21459 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003717 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.536005 B = 7531.976625 C = 9196.119020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.083 4.083 4 H 0.105 0.895 5 C -0.065 4.065 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.122 4.122 9 C -0.127 4.127 10 C -0.123 4.123 11 C -0.129 4.129 12 C 0.530 3.470 13 O -0.582 6.582 14 N -0.610 5.610 15 C 0.122 3.878 16 C -0.111 4.111 17 H 0.116 0.884 18 C 0.197 3.803 19 N -0.620 5.620 20 C -0.242 4.242 21 H 0.083 0.917 22 C -0.061 4.061 23 N -0.946 5.946 24 Si 0.970 3.030 25 H -0.288 1.288 26 H -0.300 1.300 27 H -0.264 1.264 28 C 0.137 3.863 29 C -0.091 4.091 30 H 0.138 0.862 31 C 0.112 3.888 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.044 0.956 45 H 0.085 0.915 46 H -0.004 1.004 47 H 0.010 0.990 48 H 0.245 0.755 49 H 0.039 0.961 50 H 0.029 0.971 51 H 0.102 0.898 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 -12.802 -13.638 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.104 4.104 4 H 0.123 0.877 5 C -0.103 4.103 6 C -0.084 4.084 7 C -0.141 4.141 8 C -0.139 4.139 9 C -0.145 4.145 10 C -0.141 4.141 11 C -0.147 4.147 12 C 0.320 3.680 13 O -0.462 6.462 14 N -0.342 5.342 15 C -0.001 4.001 16 C -0.131 4.131 17 H 0.134 0.866 18 C 0.071 3.929 19 N -0.346 5.346 20 C -0.372 4.372 21 H 0.101 0.899 22 C -0.255 4.255 23 N -0.594 5.594 24 Si 0.798 3.202 25 H -0.216 1.216 26 H -0.227 1.227 27 H -0.188 1.188 28 C 0.013 3.987 29 C -0.110 4.110 30 H 0.155 0.845 31 C -0.010 4.010 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.146 0.854 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.135 0.865 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.014 0.986 47 H 0.029 0.971 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.047 0.953 51 H 0.120 0.880 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.208 -13.178 -13.041 21.164 hybrid contribution 1.427 0.946 0.920 1.944 sum -8.780 -12.231 -12.121 19.329 Atomic orbital electron populations 1.21749 0.94907 1.02425 1.01429 1.21485 0.96726 0.93154 1.02907 1.21286 0.96177 0.98574 0.94372 0.87691 1.20366 0.93638 1.00925 0.95369 1.19669 1.00212 0.94406 0.94083 1.21237 0.99987 0.94247 0.98634 1.21438 0.99109 1.01019 0.92382 1.21484 0.99720 0.93418 0.99838 1.21400 0.99127 0.96313 0.97285 1.21215 1.00517 0.99759 0.93219 1.20780 0.75574 0.80313 0.91343 1.90635 1.54309 1.64185 1.37073 1.48347 1.69064 1.07235 1.09571 1.21739 1.00658 0.89891 0.87817 1.23153 0.97424 0.95280 0.97268 0.86550 1.20769 0.89986 0.92399 0.89711 1.44555 1.21803 1.52624 1.15625 1.19394 0.94676 1.13943 1.09141 0.89900 1.25577 1.00439 0.99728 0.99735 1.70220 1.35062 1.29852 1.24266 0.85186 0.77940 0.78805 0.78229 1.21556 1.22675 1.18813 1.21396 0.88586 0.97113 0.91654 1.22802 1.00664 0.93544 0.94030 0.84456 1.22101 1.01975 0.89150 0.87770 0.94701 0.91403 0.91300 0.89132 0.92417 0.92689 0.91496 0.85350 0.83788 0.83766 0.84437 0.86480 0.93733 0.89708 0.98617 0.97130 0.94607 0.94322 0.95322 0.88000 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.78 71.98 0.70 -2.34 16 2 C -0.11 -2.40 4.87 30.59 0.15 -2.25 16 3 C -0.08 -2.17 1.83 -11.54 -0.02 -2.19 16 4 H 0.10 2.37 7.05 -2.39 -0.02 2.36 16 5 C -0.07 -1.85 4.82 29.85 0.14 -1.70 16 6 C -0.08 -2.02 4.71 -19.87 -0.09 -2.11 16 7 C -0.12 -2.54 7.88 22.27 0.18 -2.37 16 8 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 9 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 10 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 11 C -0.13 -3.00 9.70 22.27 0.22 -2.79 16 12 C 0.53 17.77 5.92 87.66 0.52 18.29 16 13 O -0.58 -23.53 16.05 -3.03 -0.05 -23.57 16 14 N -0.61 -19.68 3.30 -817.69 -2.70 -22.38 16 15 C 0.12 4.08 5.99 86.65 0.52 4.60 16 16 C -0.11 -3.80 4.19 -9.26 -0.04 -3.84 16 17 H 0.12 3.49 8.14 -2.39 -0.02 3.48 16 18 C 0.20 9.54 4.62 86.72 0.40 9.94 16 19 N -0.62 -30.63 3.38 -697.19 -2.36 -32.98 16 20 C -0.24 -13.35 10.19 84.03 0.86 -12.49 16 21 H 0.08 4.35 7.88 -2.91 -0.02 4.33 16 22 C -0.06 -3.47 5.33 84.86 0.45 -3.02 16 23 N -0.95 -57.95 10.82 21.65 0.23 -57.72 16 24 Si 0.97 45.87 29.58 68.60 2.03 47.89 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 27 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 28 C 0.14 5.02 6.62 86.59 0.57 5.60 16 29 C -0.09 -2.58 4.02 -9.49 -0.04 -2.62 16 30 H 0.14 2.74 8.14 -2.38 -0.02 2.72 16 31 C 0.11 3.06 5.36 86.58 0.46 3.52 16 32 H 0.03 0.87 7.01 -2.39 -0.02 0.85 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.76 5.93 -2.38 -0.01 1.75 16 36 H 0.06 1.52 7.67 -2.39 -0.02 1.50 16 37 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16 38 H 0.07 2.02 8.08 -2.39 -0.02 2.01 16 39 H 0.13 2.40 8.01 -2.91 -0.02 2.38 16 40 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 44 H 0.04 1.77 7.94 -2.39 -0.02 1.75 16 45 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.00 -0.23 7.37 -2.39 -0.02 -0.25 16 47 H 0.01 0.58 7.33 -2.39 -0.02 0.56 16 48 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 49 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.03 1.04 7.44 -2.38 -0.02 1.02 16 51 H 0.10 2.00 7.95 -2.39 -0.02 1.98 16 52 H 0.06 1.73 7.29 -2.38 -0.02 1.72 16 Total: -1.00 -73.51 404.85 3.69 -69.82 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.88 Total: 20.60 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.65 Total: -1.67 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.82 Total: -113.07 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.51 3.69 -69.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049091801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.058 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds