Wall clock time and date at job start Wed Apr 1 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47499 * 2 1 4 4 H 1.09002 * 109.47257 * 177.02905 * 3 2 1 5 5 C 1.52997 * 109.46835 * 297.02965 * 3 2 1 6 6 C 1.50697 * 109.47218 * 294.99121 * 5 3 2 7 7 C 1.38236 * 120.00253 * 275.59453 * 6 5 3 8 8 C 1.38229 * 120.00210 * 179.76795 * 7 6 5 9 9 C 1.38235 * 120.00043 * 0.51089 * 8 7 6 10 10 C 1.38242 * 120.00042 * 359.74366 * 9 8 7 11 11 C 1.38234 * 119.99411 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.46646 * 57.03215 * 3 2 1 13 13 O 1.21282 * 119.99613 * 258.98095 * 12 3 2 14 14 N 1.34769 * 120.00262 * 78.98594 * 12 3 2 15 15 C 1.46663 * 125.33331 * 175.31188 * 14 12 3 16 16 C 1.53679 * 107.96711 * 179.29053 * 15 14 12 17 17 H 1.08994 * 113.31743 * 106.33252 * 16 15 14 18 18 C 1.53985 * 109.29493 * 233.05725 * 16 15 14 19 19 N 1.46759 * 106.67529 * 82.34269 * 18 16 15 20 20 C 1.36942 * 125.33951 * 198.42542 * 19 18 16 21 21 H 1.07996 * 120.00349 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99580 * 0.03241 * 20 19 18 23 23 N 1.31626 * 119.99988 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47371 * 59.99809 * 24 22 20 26 26 H 1.48503 * 109.47559 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47068 * 299.99550 * 24 22 20 28 28 C 1.46661 * 109.32881 * 18.45157 * 19 18 16 29 29 C 1.53671 * 107.97317 * 359.28993 * 28 19 18 30 30 H 1.09000 * 112.77562 * 106.01691 * 29 28 19 31 31 C 1.46758 * 125.33603 * 355.30706 * 14 12 3 32 32 H 1.08997 * 109.47492 * 184.84299 * 1 2 3 33 33 H 1.09004 * 109.47158 * 304.84927 * 1 2 3 34 34 H 1.08999 * 109.47095 * 64.84286 * 1 2 3 35 35 H 1.09000 * 109.47334 * 240.00238 * 2 1 3 36 36 H 1.09004 * 109.47254 * 120.00436 * 2 1 3 37 37 H 1.09000 * 109.47216 * 54.99822 * 5 3 2 38 38 H 1.09004 * 109.46662 * 174.99271 * 5 3 2 39 39 H 1.08004 * 119.99581 * 359.97438 * 7 6 5 40 40 H 1.07996 * 120.00272 * 180.23055 * 8 7 6 41 41 H 1.08000 * 120.00608 * 179.72813 * 9 8 7 42 42 H 1.07989 * 120.00234 * 179.97438 * 10 9 8 43 43 H 1.08003 * 120.00011 * 179.97438 * 11 10 9 44 44 H 1.09001 * 109.77028 * 59.66294 * 15 14 12 45 45 H 1.08993 * 109.77109 * 298.91722 * 15 14 12 46 46 H 1.09005 * 110.01942 * 323.04329 * 18 16 15 47 47 H 1.08996 * 110.02141 * 201.64606 * 18 16 15 48 48 H 0.96997 * 119.99789 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.76805 * 239.65730 * 28 19 18 50 50 H 1.09006 * 109.76743 * 118.92401 * 28 19 18 51 51 H 1.08999 * 110.01336 * 79.14892 * 31 14 12 52 52 H 1.08997 * 110.01767 * 317.75838 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1288 1.4429 0.0533 5 6 1.5920 2.1418 -1.2849 6 6 2.2520 1.4858 -2.4702 7 6 3.5254 1.8662 -2.8506 8 6 4.1326 1.2610 -3.9349 9 6 3.4624 0.2828 -4.6454 10 6 2.1869 -0.0940 -4.2684 11 6 1.5816 0.5079 -3.1811 12 6 1.4786 2.1738 1.1920 13 8 0.5346 2.9227 1.0545 14 7 2.0254 1.9956 2.4109 15 6 1.6385 2.7170 3.6278 16 6 2.5015 2.1908 4.7854 17 1 3.2754 2.8911 5.0994 18 6 1.5866 1.7536 5.9442 19 7 1.1214 0.3987 5.6253 20 6 0.0348 -0.2181 6.1858 21 1 -0.2307 -1.2212 5.8865 22 6 -0.7255 0.4462 7.1384 23 7 -0.4017 1.6687 7.5034 24 14 -2.2081 -0.3948 7.9025 25 1 -1.7725 -1.6355 8.5925 26 1 -2.8446 0.5196 8.8844 27 1 -3.1858 -0.7373 6.8385 28 6 2.0030 -0.1914 4.6127 29 6 3.0766 0.8481 4.2548 30 1 4.0534 0.6076 4.6746 31 6 3.1013 1.0493 2.7284 32 1 -0.3634 -1.0239 0.0868 33 1 -0.3634 0.5872 0.8434 34 1 -0.3633 0.4369 -0.9302 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.5092 2.0637 -1.3825 38 1 1.8783 3.1929 -1.2453 39 1 4.0471 2.6339 -2.2984 40 1 5.1289 1.5555 -4.2298 41 1 3.9351 -0.1870 -5.4953 42 1 1.6631 -0.8578 -4.8237 43 1 0.5849 0.2139 -2.8866 44 1 0.5849 2.5386 3.8428 45 1 1.8120 3.7847 3.4944 46 1 0.7362 2.4308 6.0243 47 1 2.1468 1.7453 6.8792 48 1 -0.9327 2.1327 8.1694 49 1 1.4253 -0.4457 3.7240 50 1 2.4766 -1.0877 5.0134 51 1 4.0628 1.4611 2.4218 52 1 2.9238 0.0996 2.2239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049091802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:20 Heat of formation + Delta-G solvation = 9.043109 kcal Electronic energy + Delta-G solvation = -30866.144593 eV Core-core repulsion = 27023.571914 eV Total energy + Delta-G solvation = -3842.572679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.55927 -39.52876 -38.32358 -35.53906 -34.92003 -32.28628 -31.89078 -31.08421 -30.20585 -29.64644 -28.69114 -26.04524 -25.47792 -24.68732 -23.25606 -22.76571 -22.10661 -20.68250 -20.02051 -19.36300 -18.62496 -17.21006 -16.88283 -16.55830 -15.93201 -15.70196 -15.39497 -15.16111 -14.83740 -14.70272 -14.24250 -13.69795 -13.58561 -13.53438 -13.26355 -13.06615 -13.02016 -12.62366 -12.48384 -12.44241 -12.09542 -12.06113 -11.91556 -11.59829 -11.34055 -11.33626 -11.24773 -11.12108 -10.96340 -10.86121 -10.79775 -10.65588 -10.32538 -10.14801 -9.97528 -9.84799 -9.61701 -9.46541 -9.10651 -8.86306 -8.63161 -8.25654 -6.83904 -5.68997 -3.07425 1.14842 1.19847 2.87432 3.25438 3.40699 3.45086 3.46153 3.61054 4.43991 4.48087 4.60975 4.74806 4.76551 4.79746 4.86038 4.86250 4.95439 5.06508 5.21807 5.28642 5.29621 5.35756 5.37791 5.47951 5.51293 5.53854 5.56408 5.65550 5.74041 5.79558 5.80836 5.84990 5.89715 5.93524 5.95071 6.09627 6.15535 6.18457 6.26599 6.30639 6.33210 6.39668 6.43130 6.49190 6.62131 6.67808 6.75531 6.81178 6.82950 7.44462 7.61289 7.81530 7.83897 8.31906 8.43593 9.21810 9.82401 10.45342 11.37623 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002650 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.928277 B =10563.093120 C =11078.908186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.095 4.095 4 H 0.089 0.911 5 C -0.066 4.066 6 C -0.073 4.073 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.120 4.120 11 C -0.114 4.114 12 C 0.533 3.467 13 O -0.542 6.542 14 N -0.606 5.606 15 C 0.122 3.878 16 C -0.124 4.124 17 H 0.087 0.913 18 C 0.170 3.830 19 N -0.599 5.599 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.145 3.855 29 C -0.110 4.110 30 H 0.096 0.904 31 C 0.108 3.892 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.019 0.981 48 H 0.253 0.747 49 H 0.022 0.978 50 H 0.021 0.979 51 H 0.061 0.939 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.084 -1.362 -20.766 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.116 4.116 4 H 0.107 0.893 5 C -0.103 4.103 6 C -0.073 4.073 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.138 4.138 11 C -0.132 4.132 12 C 0.321 3.679 13 O -0.420 6.420 14 N -0.339 5.339 15 C 0.000 4.000 16 C -0.144 4.144 17 H 0.105 0.895 18 C 0.045 3.955 19 N -0.325 5.325 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.019 3.981 29 C -0.129 4.129 30 H 0.115 0.885 31 C -0.015 4.015 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.039 0.961 51 H 0.079 0.921 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.360 -0.895 -20.739 23.200 hybrid contribution -0.560 -0.525 0.518 0.926 sum 9.799 -1.420 -20.221 22.515 Atomic orbital electron populations 1.21868 0.95033 1.01893 1.02578 1.21541 0.97066 0.93840 1.02849 1.21283 1.01255 0.96467 0.92639 0.89256 1.20476 1.01454 0.98786 0.89621 1.19906 0.94496 0.96423 0.96488 1.21079 0.94899 1.00256 0.97354 1.21125 0.99817 0.96880 0.95908 1.21129 0.95277 0.98119 1.00078 1.21153 0.95449 0.99949 0.97205 1.21145 1.00164 0.96390 0.95502 1.20109 0.82795 0.82077 0.82918 1.90692 1.27329 1.39067 1.84914 1.48249 1.37354 1.40025 1.08289 1.21845 1.00725 0.94832 0.82602 1.23198 0.98230 0.95566 0.97378 0.89478 1.21468 0.95805 0.87777 0.90462 1.44184 1.29937 1.13073 1.45339 1.18987 1.01748 0.97856 1.16741 0.90590 1.24778 0.99536 0.96686 0.99427 1.69845 1.40693 1.11598 1.34926 0.86169 0.82437 0.78217 0.78770 1.21218 1.21548 1.21158 1.21128 0.90427 0.93896 0.92660 1.22841 0.99861 0.97209 0.93017 0.88549 1.22053 0.89975 0.92959 0.96514 0.92561 0.91901 0.92506 0.90683 0.91197 0.89514 0.90552 0.86149 0.86254 0.86375 0.86210 0.85921 0.90229 0.92589 0.88550 0.96325 0.93628 0.95972 0.96118 0.92113 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.31 37.15 0.35 -1.64 16 2 C -0.12 -1.31 5.35 -26.73 -0.14 -1.45 16 3 C -0.10 -1.13 1.85 -91.77 -0.17 -1.30 16 4 H 0.09 0.93 7.79 -51.93 -0.40 0.53 16 5 C -0.07 -0.74 4.03 -27.89 -0.11 -0.86 16 6 C -0.07 -0.73 4.54 -104.63 -0.47 -1.20 16 7 C -0.12 -1.08 9.72 -39.59 -0.38 -1.46 16 8 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 9 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 10 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 11 C -0.11 -1.07 8.34 -39.58 -0.33 -1.40 16 12 C 0.53 8.55 5.69 -10.99 -0.06 8.49 16 13 O -0.54 -10.65 16.06 5.56 0.09 -10.56 16 14 N -0.61 -9.77 3.31 -172.34 -0.57 -10.34 16 15 C 0.12 2.24 6.24 -3.60 -0.02 2.22 16 16 C -0.12 -2.20 4.09 -88.47 -0.36 -2.56 16 17 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.17 3.98 4.84 -3.39 -0.02 3.96 16 19 N -0.60 -14.95 3.38 -171.88 -0.58 -15.53 16 20 C -0.23 -6.23 10.25 -15.06 -0.15 -6.38 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 23 N -0.92 -26.71 10.16 55.49 0.56 -26.15 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.15 2.90 6.62 -3.61 -0.02 2.87 16 29 C -0.11 -1.74 4.09 -88.48 -0.36 -2.10 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 C 0.11 1.45 5.49 -3.39 -0.02 1.43 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.02 6.69 -51.93 -0.35 0.67 16 34 H 0.06 0.65 5.84 -51.93 -0.30 0.35 16 35 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 36 H 0.07 0.82 5.98 -51.93 -0.31 0.51 16 37 H 0.09 1.07 6.20 -51.93 -0.32 0.74 16 38 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 1.06 7.25 -52.48 -0.38 0.68 16 44 H 0.08 1.79 7.47 -51.93 -0.39 1.40 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.10 2.57 5.83 -51.93 -0.30 2.27 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.46 7.47 -51.93 -0.39 0.07 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.07 0.91 5.39 -51.93 -0.28 0.63 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -31.84 395.61 -11.51 -43.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.38 Total: 2.03 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.58 Total: -5.93 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.59 Total: -52.02 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.84 -11.51 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049091802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.396 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds