Wall clock time and date at job start Wed Apr 1 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47499 * 2 1 4 4 H 1.09002 * 109.47257 * 177.02905 * 3 2 1 5 5 C 1.52997 * 109.46835 * 297.02965 * 3 2 1 6 6 C 1.50697 * 109.47218 * 294.99121 * 5 3 2 7 7 C 1.38236 * 120.00253 * 275.59453 * 6 5 3 8 8 C 1.38229 * 120.00210 * 179.76795 * 7 6 5 9 9 C 1.38235 * 120.00043 * 0.51089 * 8 7 6 10 10 C 1.38242 * 120.00042 * 359.74366 * 9 8 7 11 11 C 1.38234 * 119.99411 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.46646 * 57.03215 * 3 2 1 13 13 O 1.21282 * 119.99613 * 258.98095 * 12 3 2 14 14 N 1.34769 * 120.00262 * 78.98594 * 12 3 2 15 15 C 1.46663 * 125.33331 * 175.31188 * 14 12 3 16 16 C 1.53679 * 107.96711 * 179.29053 * 15 14 12 17 17 H 1.08994 * 113.31743 * 106.33252 * 16 15 14 18 18 C 1.53985 * 109.29493 * 233.05725 * 16 15 14 19 19 N 1.46759 * 106.67529 * 82.34269 * 18 16 15 20 20 C 1.36942 * 125.33951 * 198.42542 * 19 18 16 21 21 H 1.07996 * 120.00349 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99580 * 0.03241 * 20 19 18 23 23 N 1.31626 * 119.99988 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47371 * 59.99809 * 24 22 20 26 26 H 1.48503 * 109.47559 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47068 * 299.99550 * 24 22 20 28 28 C 1.46661 * 109.32881 * 18.45157 * 19 18 16 29 29 C 1.53671 * 107.97317 * 359.28993 * 28 19 18 30 30 H 1.09000 * 112.77562 * 106.01691 * 29 28 19 31 31 C 1.46758 * 125.33603 * 355.30706 * 14 12 3 32 32 H 1.08997 * 109.47492 * 184.84299 * 1 2 3 33 33 H 1.09004 * 109.47158 * 304.84927 * 1 2 3 34 34 H 1.08999 * 109.47095 * 64.84286 * 1 2 3 35 35 H 1.09000 * 109.47334 * 240.00238 * 2 1 3 36 36 H 1.09004 * 109.47254 * 120.00436 * 2 1 3 37 37 H 1.09000 * 109.47216 * 54.99822 * 5 3 2 38 38 H 1.09004 * 109.46662 * 174.99271 * 5 3 2 39 39 H 1.08004 * 119.99581 * 359.97438 * 7 6 5 40 40 H 1.07996 * 120.00272 * 180.23055 * 8 7 6 41 41 H 1.08000 * 120.00608 * 179.72813 * 9 8 7 42 42 H 1.07989 * 120.00234 * 179.97438 * 10 9 8 43 43 H 1.08003 * 120.00011 * 179.97438 * 11 10 9 44 44 H 1.09001 * 109.77028 * 59.66294 * 15 14 12 45 45 H 1.08993 * 109.77109 * 298.91722 * 15 14 12 46 46 H 1.09005 * 110.01942 * 323.04329 * 18 16 15 47 47 H 1.08996 * 110.02141 * 201.64606 * 18 16 15 48 48 H 0.96997 * 119.99789 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.76805 * 239.65730 * 28 19 18 50 50 H 1.09006 * 109.76743 * 118.92401 * 28 19 18 51 51 H 1.08999 * 110.01336 * 79.14892 * 31 14 12 52 52 H 1.08997 * 110.01767 * 317.75838 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1288 1.4429 0.0533 5 6 1.5920 2.1418 -1.2849 6 6 2.2520 1.4858 -2.4702 7 6 3.5254 1.8662 -2.8506 8 6 4.1326 1.2610 -3.9349 9 6 3.4624 0.2828 -4.6454 10 6 2.1869 -0.0940 -4.2684 11 6 1.5816 0.5079 -3.1811 12 6 1.4786 2.1738 1.1920 13 8 0.5346 2.9227 1.0545 14 7 2.0254 1.9956 2.4109 15 6 1.6385 2.7170 3.6278 16 6 2.5015 2.1908 4.7854 17 1 3.2754 2.8911 5.0994 18 6 1.5866 1.7536 5.9442 19 7 1.1214 0.3987 5.6253 20 6 0.0348 -0.2181 6.1858 21 1 -0.2307 -1.2212 5.8865 22 6 -0.7255 0.4462 7.1384 23 7 -0.4017 1.6687 7.5034 24 14 -2.2081 -0.3948 7.9025 25 1 -1.7725 -1.6355 8.5925 26 1 -2.8446 0.5196 8.8844 27 1 -3.1858 -0.7373 6.8385 28 6 2.0030 -0.1914 4.6127 29 6 3.0766 0.8481 4.2548 30 1 4.0534 0.6076 4.6746 31 6 3.1013 1.0493 2.7284 32 1 -0.3634 -1.0239 0.0868 33 1 -0.3634 0.5872 0.8434 34 1 -0.3633 0.4369 -0.9302 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.5092 2.0637 -1.3825 38 1 1.8783 3.1929 -1.2453 39 1 4.0471 2.6339 -2.2984 40 1 5.1289 1.5555 -4.2298 41 1 3.9351 -0.1870 -5.4953 42 1 1.6631 -0.8578 -4.8237 43 1 0.5849 0.2139 -2.8866 44 1 0.5849 2.5386 3.8428 45 1 1.8120 3.7847 3.4944 46 1 0.7362 2.4308 6.0243 47 1 2.1468 1.7453 6.8792 48 1 -0.9327 2.1327 8.1694 49 1 1.4253 -0.4457 3.7240 50 1 2.4766 -1.0877 5.0134 51 1 4.0628 1.4611 2.4218 52 1 2.9238 0.0996 2.2239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049091802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:19 Heat of formation + Delta-G solvation = -7.900304 kcal Electronic energy + Delta-G solvation = -30866.879315 eV Core-core repulsion = 27023.571914 eV Total energy + Delta-G solvation = -3843.307400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79681 -40.44938 -39.56277 -36.62581 -36.51969 -34.07088 -32.76088 -31.83933 -31.62073 -31.27247 -29.65481 -27.55618 -27.08864 -25.87692 -24.69623 -23.40750 -23.07107 -21.86667 -21.48552 -20.83498 -19.84202 -18.81507 -18.14524 -17.49022 -17.19526 -16.81114 -16.63518 -16.49967 -16.03415 -15.76685 -15.54395 -15.21373 -14.82194 -14.55913 -14.31059 -14.20360 -13.93149 -13.88069 -13.77395 -13.54532 -13.45417 -13.34557 -13.24113 -13.01221 -12.94064 -12.79258 -12.71975 -12.37484 -12.07990 -11.95891 -11.93325 -11.85067 -11.81645 -11.61932 -11.54240 -11.43295 -11.38109 -10.80030 -10.66559 -9.73100 -9.59957 -9.52525 -8.87180 -7.82278 -5.22064 0.50122 0.57959 1.42337 1.45551 1.51603 1.62706 2.04313 2.47139 2.95196 3.29399 3.37758 3.46376 3.67988 3.76913 3.82174 3.87900 3.97086 4.08105 4.12464 4.22009 4.24540 4.30068 4.31761 4.39087 4.41773 4.51401 4.52298 4.58497 4.67315 4.72500 4.77247 4.81904 4.86492 4.93307 4.95794 4.99700 5.03764 5.10602 5.12291 5.19925 5.24292 5.26207 5.31013 5.35496 5.39758 5.47486 5.59242 5.66212 5.71224 5.80781 5.81412 6.19927 6.27566 6.59300 7.10722 7.17399 7.80112 8.40385 9.22001 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002650 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.928277 B =10563.093120 C =11078.908186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.083 4.083 4 H 0.117 0.883 5 C -0.059 4.059 6 C -0.083 4.083 7 C -0.125 4.125 8 C -0.123 4.123 9 C -0.130 4.130 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.527 3.473 13 O -0.589 6.589 14 N -0.609 5.609 15 C 0.130 3.870 16 C -0.109 4.109 17 H 0.121 0.879 18 C 0.176 3.824 19 N -0.622 5.622 20 C -0.239 4.239 21 H 0.077 0.923 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.975 3.025 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.282 1.282 28 C 0.138 3.862 29 C -0.095 4.095 30 H 0.134 0.866 31 C 0.110 3.890 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.123 0.877 44 H 0.023 0.977 45 H 0.063 0.937 46 H 0.053 0.947 47 H -0.006 1.006 48 H 0.246 0.754 49 H 0.015 0.985 50 H 0.029 0.971 51 H 0.106 0.894 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.182 -2.932 -23.199 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.104 4.104 4 H 0.135 0.865 5 C -0.096 4.096 6 C -0.083 4.083 7 C -0.143 4.143 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.143 4.143 11 C -0.143 4.143 12 C 0.317 3.683 13 O -0.469 6.469 14 N -0.342 5.342 15 C 0.006 3.994 16 C -0.129 4.129 17 H 0.139 0.861 18 C 0.050 3.950 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.095 0.905 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.804 3.196 25 H -0.200 1.200 26 H -0.219 1.219 27 H -0.209 1.209 28 C 0.013 3.987 29 C -0.114 4.114 30 H 0.152 0.848 31 C -0.012 4.012 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.141 0.859 44 H 0.042 0.958 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.012 0.988 48 H 0.056 0.944 49 H 0.033 0.967 50 H 0.047 0.953 51 H 0.124 0.876 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.499 -2.504 -23.194 26.953 hybrid contribution -1.570 -0.056 1.222 1.990 sum 11.929 -2.560 -21.972 25.132 Atomic orbital electron populations 1.21833 0.96563 1.01596 1.01132 1.21525 0.95597 0.93545 1.03902 1.21291 1.02478 0.96004 0.90592 0.86479 1.20341 1.00514 0.98548 0.90226 1.19769 0.95099 0.97118 0.96362 1.21249 0.94623 1.00572 0.97894 1.21415 1.00726 0.96563 0.95385 1.21462 0.95098 0.97808 1.00459 1.21403 0.95850 1.00185 0.96911 1.21244 1.00347 0.96663 0.96096 1.20959 0.82024 0.81518 0.83777 1.90668 1.29422 1.41210 1.85645 1.48376 1.38030 1.40253 1.07502 1.21529 0.97761 0.95745 0.84327 1.23047 0.97630 0.97598 0.94638 0.86062 1.21183 0.95052 0.86770 0.91973 1.44481 1.30191 1.13968 1.46129 1.19351 1.02788 0.98088 1.16633 0.90480 1.25596 1.02340 0.97458 1.00467 1.70108 1.41550 1.12781 1.35292 0.85197 0.79237 0.77436 0.77762 1.20005 1.21920 1.20873 1.21365 0.90863 0.95480 0.90987 1.22905 0.99770 0.93818 0.94932 0.84844 1.22286 0.90852 0.93475 0.94605 0.91696 0.96155 0.91683 0.88425 0.91073 0.91329 0.91341 0.85225 0.84228 0.84275 0.84586 0.85949 0.95805 0.91904 0.92841 0.98795 0.94419 0.96731 0.95301 0.87601 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.31 71.98 0.67 -3.25 16 2 C -0.11 -2.24 5.35 30.59 0.16 -2.07 16 3 C -0.08 -1.82 1.85 -11.54 -0.02 -1.84 16 4 H 0.12 1.97 7.79 -2.39 -0.02 1.95 16 5 C -0.06 -1.28 4.03 29.85 0.12 -1.16 16 6 C -0.08 -1.49 4.54 -19.87 -0.09 -1.59 16 7 C -0.13 -1.94 9.72 22.27 0.22 -1.73 16 8 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 9 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 10 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 11 C -0.13 -2.11 8.34 22.27 0.19 -1.92 16 12 C 0.53 16.79 5.69 87.66 0.50 17.29 16 13 O -0.59 -24.17 16.06 -3.03 -0.05 -24.22 16 14 N -0.61 -18.98 3.31 -817.54 -2.70 -21.69 16 15 C 0.13 4.86 6.24 86.58 0.54 5.40 16 16 C -0.11 -3.79 4.09 -9.40 -0.04 -3.83 16 17 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 18 C 0.18 8.54 4.84 86.66 0.42 8.96 16 19 N -0.62 -31.88 3.38 -697.70 -2.35 -34.24 16 20 C -0.24 -13.68 10.25 84.03 0.86 -12.82 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 22 C -0.07 -3.82 5.48 84.86 0.47 -3.36 16 23 N -0.95 -57.69 10.16 21.65 0.22 -57.47 16 24 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 28 C 0.14 5.40 6.62 86.57 0.57 5.97 16 29 C -0.10 -2.72 4.09 -9.41 -0.04 -2.76 16 30 H 0.13 2.95 8.14 -2.39 -0.02 2.94 16 31 C 0.11 2.51 5.49 86.66 0.48 2.99 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.02 0.67 6.69 -2.38 -0.02 0.65 16 34 H 0.06 1.51 5.84 -2.39 -0.01 1.50 16 35 H 0.10 1.65 6.37 -2.39 -0.02 1.63 16 36 H 0.07 1.47 5.98 -2.38 -0.01 1.45 16 37 H 0.07 1.72 6.20 -2.39 -0.01 1.71 16 38 H 0.07 1.57 8.12 -2.38 -0.02 1.55 16 39 H 0.13 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.14 1.39 8.06 -2.92 -0.02 1.37 16 43 H 0.12 1.97 7.25 -2.91 -0.02 1.95 16 44 H 0.02 1.15 7.47 -2.39 -0.02 1.13 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 3.06 5.83 -2.38 -0.01 3.04 16 47 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.01 0.60 7.47 -2.39 -0.02 0.58 16 50 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.09 1.83 5.39 -2.39 -0.01 1.82 16 Total: -1.00 -75.56 395.61 3.72 -71.84 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.90 Total: 16.83 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.67 Total: -0.08 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.84 Total: -113.39 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -75.56 3.72 -71.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049091802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.942 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds