Wall clock time and date at job start Wed Apr 1 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46629 * 2 1 4 4 C 1.52996 * 109.47122 * 119.99494 * 2 1 3 5 5 C 1.50704 * 109.47318 * 300.00268 * 4 2 1 6 6 C 1.38239 * 119.99713 * 90.00522 * 5 4 2 7 7 C 1.38234 * 119.99711 * 180.02562 * 6 5 4 8 8 C 1.38237 * 120.00132 * 359.97438 * 7 6 5 9 9 C 1.38239 * 119.99863 * 0.25789 * 8 7 6 10 10 C 1.38232 * 119.99776 * 270.02363 * 5 4 2 11 11 C 1.50694 * 109.47241 * 239.99830 * 2 1 3 12 12 O 1.21279 * 119.99937 * 229.75943 * 11 2 1 13 13 N 1.34780 * 120.00222 * 49.76809 * 11 2 1 14 14 C 1.46753 * 125.32698 * 3.76332 * 13 11 2 15 15 C 1.54126 * 106.61964 * 161.53348 * 14 13 11 16 16 H 1.08997 * 113.47688 * 151.40230 * 15 14 13 17 17 C 1.53967 * 109.47673 * 278.68388 * 15 14 13 18 18 N 1.46770 * 106.62592 * 138.17110 * 17 15 14 19 19 C 1.36936 * 125.33926 * 161.50245 * 18 17 15 20 20 H 1.08000 * 120.00047 * 354.22300 * 19 18 17 21 21 C 1.38812 * 120.00441 * 174.21977 * 19 18 17 22 22 N 1.31624 * 119.99569 * 6.82786 * 21 19 18 23 23 Si 1.86797 * 120.00312 * 186.82687 * 21 19 18 24 24 H 1.48502 * 109.47155 * 94.98581 * 23 21 19 25 25 H 1.48498 * 109.47381 * 214.98770 * 23 21 19 26 26 H 1.48500 * 109.47126 * 334.98731 * 23 21 19 27 27 C 1.46672 * 109.32466 * 341.48691 * 18 17 15 28 28 C 1.53716 * 107.94358 * 0.54234 * 27 18 17 29 29 H 1.08996 * 113.06031 * 140.00192 * 28 27 18 30 30 C 1.46634 * 125.33450 * 184.07591 * 13 11 2 31 31 H 1.08995 * 109.47500 * 299.99574 * 1 2 3 32 32 H 1.08994 * 109.47451 * 60.00429 * 1 2 3 33 33 H 1.09001 * 109.46632 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47252 * 173.71622 * 3 2 1 35 35 H 1.09003 * 109.47119 * 293.71052 * 3 2 1 36 36 H 1.08995 * 109.47560 * 53.71015 * 3 2 1 37 37 H 1.09000 * 109.46933 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47123 * 60.00599 * 4 2 1 39 39 H 1.07996 * 120.00154 * 359.97438 * 6 5 4 40 40 H 1.07994 * 119.99685 * 179.97438 * 7 6 5 41 41 H 1.08000 * 119.99951 * 179.97438 * 8 7 6 42 42 H 1.07997 * 119.99514 * 179.72833 * 9 8 7 43 43 H 1.08000 * 120.00499 * 359.97438 * 10 5 4 44 44 H 1.08999 * 110.01184 * 280.98257 * 14 13 11 45 45 H 1.08997 * 110.00716 * 42.34946 * 14 13 11 46 46 H 1.09001 * 110.02747 * 257.46384 * 17 15 14 47 47 H 1.09006 * 110.02345 * 18.88299 * 17 15 14 48 48 H 0.97002 * 119.99795 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.76823 * 240.91692 * 27 18 17 50 50 H 1.09005 * 109.77066 * 120.16777 * 27 18 17 51 51 H 1.09003 * 109.75747 * 300.47875 * 30 13 11 52 52 H 1.09007 * 109.75905 * 61.19345 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 6 0.3298 -0.3762 3.0441 7 6 -0.1313 0.2759 4.1725 8 6 0.6157 1.2930 4.7367 9 6 1.8212 1.6617 4.1695 10 6 2.2845 1.0067 3.0437 11 6 2.0324 -0.7104 -1.2304 12 8 2.8742 -1.5775 -1.1287 13 7 1.5463 -0.3821 -2.4438 14 6 0.5881 0.6970 -2.7106 15 6 0.6835 1.0088 -4.2170 16 1 -0.2445 1.3929 -4.6405 17 6 1.8897 1.9302 -4.4751 18 7 2.5452 1.4331 -5.6906 19 6 3.4196 2.1459 -6.4670 20 1 3.6042 3.1885 -6.2543 21 6 4.0686 1.5284 -7.5273 22 7 3.7456 0.2995 -7.8708 23 14 5.4002 2.4414 -8.4668 24 1 6.7303 2.0882 -7.9089 25 1 5.3467 2.0573 -9.9002 26 1 5.1821 3.9046 -8.3380 27 6 2.1173 0.0531 -5.9432 28 6 1.1268 -0.3454 -4.8373 29 1 0.2875 -0.9340 -5.2077 30 6 1.8870 -1.0513 -3.7033 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 3.1241 1.4447 0.1125 35 1 1.7714 1.9228 -0.9409 36 1 1.5876 1.9879 0.8283 37 1 3.1300 -0.7207 1.2495 38 1 1.6768 -1.7488 1.2493 39 1 -0.2540 -1.1705 2.6031 40 1 -1.0750 -0.0094 4.6131 41 1 0.2553 1.8027 5.6180 42 1 2.4027 2.4593 4.6078 43 1 3.2281 1.2922 2.6028 44 1 -0.4207 0.3711 -2.4574 45 1 0.8514 1.5813 -2.1304 46 1 1.5510 2.9551 -4.6262 47 1 2.5807 1.8851 -3.6333 48 1 4.1994 -0.1322 -8.6115 49 1 2.9815 -0.6107 -5.9211 50 1 1.6290 -0.0093 -6.9157 51 1 2.9604 -0.9807 -3.8794 52 1 1.5893 -2.0988 -3.6563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049154848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:02 Heat of formation + Delta-G solvation = 22.712304 kcal Electronic energy + Delta-G solvation = -30914.139762 eV Core-core repulsion = 27072.159824 eV Total energy + Delta-G solvation = -3841.979938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85415 -39.58794 -38.32447 -35.84982 -35.01228 -32.35057 -31.47971 -31.16601 -30.02170 -29.63707 -27.53765 -26.93508 -25.73099 -25.43464 -23.70294 -22.67971 -22.10051 -20.70304 -20.18910 -19.39042 -18.82793 -16.97025 -16.83070 -16.41467 -15.88659 -15.63654 -15.47242 -15.13947 -14.75309 -14.58519 -14.07253 -13.93485 -13.65847 -13.57049 -13.39092 -13.14914 -13.04547 -12.73336 -12.57134 -12.38044 -12.09552 -11.95218 -11.90497 -11.76272 -11.58290 -11.47221 -11.17899 -11.16209 -10.97713 -10.93046 -10.86838 -10.77314 -10.26132 -10.11655 -10.00966 -9.88298 -9.66705 -9.45446 -9.10001 -8.85654 -8.60155 -8.31907 -6.84117 -5.74947 -3.07248 1.14517 1.19458 2.81144 3.18569 3.39654 3.44984 3.46736 3.59877 4.35896 4.47457 4.61133 4.63783 4.73525 4.76484 4.82704 4.83160 4.92144 5.00239 5.13038 5.24062 5.27825 5.32772 5.40812 5.42461 5.51095 5.55473 5.58133 5.62787 5.66618 5.72884 5.76574 5.78054 5.86134 5.87117 5.93919 5.99472 6.08838 6.14580 6.18144 6.26697 6.28050 6.30724 6.33929 6.48285 6.57025 6.61387 6.69270 6.80503 6.82896 7.50701 7.57728 7.76969 7.79300 8.24869 8.36124 9.20429 9.81118 10.45346 11.37152 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020912 B = 0.002503 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.595166 B =11185.543347 C =11590.309941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.059 4.059 5 C -0.071 4.071 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.120 4.120 10 C -0.114 4.114 11 C 0.536 3.464 12 O -0.544 6.544 13 N -0.604 5.604 14 C 0.101 3.899 15 C -0.112 4.112 16 H 0.098 0.902 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.186 3.814 28 C -0.122 4.122 29 H 0.088 0.912 30 C 0.118 3.882 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.052 0.948 50 H 0.045 0.955 51 H 0.075 0.925 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 0.682 21.973 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.071 4.071 3 C -0.206 4.206 4 C -0.097 4.097 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.138 4.138 10 C -0.132 4.132 11 C 0.324 3.676 12 O -0.422 6.422 13 N -0.337 5.337 14 C -0.022 4.022 15 C -0.132 4.132 16 H 0.116 0.884 17 C 0.019 3.981 18 N -0.328 5.328 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.061 3.939 28 C -0.142 4.142 29 H 0.106 0.894 30 C -0.004 4.004 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.093 0.907 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.416 0.154 21.891 24.244 hybrid contribution 0.692 0.432 -0.571 0.996 sum -9.724 0.586 21.321 23.441 Atomic orbital electron populations 1.22320 0.92897 1.02755 1.03841 1.20592 0.97250 0.96757 0.92456 1.22063 1.01785 0.93606 1.03105 1.20465 1.01706 0.98279 0.89208 1.19862 0.94669 0.96261 0.96284 1.21088 0.95877 1.00210 0.96125 1.21125 0.99820 0.96642 0.96315 1.21122 0.95347 0.97934 1.00162 1.21147 0.96461 0.99900 0.96287 1.21128 1.00013 0.95971 0.96059 1.20126 0.81241 0.83007 0.83252 1.90686 1.32174 1.33286 1.86035 1.48187 1.44692 1.34081 1.06702 1.22398 0.92380 0.90440 0.96995 1.23017 1.00140 0.97164 0.92845 0.88366 1.21234 0.91182 0.95262 0.90449 1.44206 1.51662 1.11451 1.25482 1.19034 1.15653 0.93421 1.07719 0.90428 1.24817 0.99919 0.96539 0.98990 1.69965 1.43573 1.12883 1.30287 0.86118 0.82112 0.78689 0.78968 1.21599 1.21748 1.20637 1.21045 0.93837 0.86239 0.92742 1.23123 0.99172 0.95133 0.96770 0.89411 1.21969 1.00938 0.95580 0.81888 0.91198 0.90473 0.92361 0.91957 0.91234 0.91126 0.89950 0.90483 0.86135 0.86291 0.86406 0.86227 0.85998 0.91314 0.90157 0.94798 0.96492 0.93681 0.93027 0.93691 0.90663 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 7.55 37.16 0.28 -1.26 16 2 C -0.07 -0.78 0.52 -155.66 -0.08 -0.86 16 3 C -0.15 -1.61 7.52 37.16 0.28 -1.33 16 4 C -0.06 -0.66 3.81 -27.88 -0.11 -0.77 16 5 C -0.07 -0.69 4.02 -104.62 -0.42 -1.11 16 6 C -0.11 -1.01 7.88 -39.58 -0.31 -1.32 16 7 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 8 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 9 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.11 -1.05 8.04 -39.58 -0.32 -1.37 16 11 C 0.54 8.45 6.57 -10.99 -0.07 8.37 16 12 O -0.54 -10.63 16.29 5.56 0.09 -10.54 16 13 N -0.60 -9.39 3.28 -172.26 -0.56 -9.95 16 14 C 0.10 1.30 4.09 -3.32 -0.01 1.28 16 15 C -0.11 -1.75 4.16 -88.25 -0.37 -2.12 16 16 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.15 2.87 6.49 -3.39 -0.02 2.85 16 18 N -0.60 -15.00 3.38 -171.84 -0.58 -15.58 16 19 C -0.23 -6.35 10.24 -15.06 -0.15 -6.51 16 20 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -26.79 10.30 55.49 0.57 -26.22 16 23 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.19 4.37 4.78 -3.58 -0.02 4.35 16 28 C -0.12 -2.15 4.01 -88.61 -0.36 -2.50 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 C 0.12 2.09 6.22 -3.61 -0.02 2.07 16 31 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 32 H 0.08 0.70 3.98 -51.93 -0.21 0.50 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.78 5.08 -51.93 -0.26 0.51 16 36 H 0.07 0.67 6.63 -51.93 -0.34 0.32 16 37 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 38 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.12 0.94 8.03 -52.49 -0.42 0.52 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 1.05 8.03 -52.49 -0.42 0.63 16 44 H 0.07 0.73 6.45 -51.93 -0.34 0.39 16 45 H 0.08 0.95 4.65 -51.93 -0.24 0.70 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.05 1.37 6.61 -51.93 -0.34 1.03 16 50 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 51 H 0.08 1.59 7.29 -51.93 -0.38 1.21 16 52 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -32.25 389.00 -10.89 -43.14 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.25 Total: 0.84 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.99 Total: -4.64 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.57 Total: -51.75 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.25 -10.89 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049154848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.853 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds