Wall clock time and date at job start Wed Apr 1 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46629 * 2 1 4 4 C 1.52996 * 109.47122 * 119.99494 * 2 1 3 5 5 C 1.50704 * 109.47318 * 300.00268 * 4 2 1 6 6 C 1.38239 * 119.99713 * 90.00522 * 5 4 2 7 7 C 1.38234 * 119.99711 * 180.02562 * 6 5 4 8 8 C 1.38237 * 120.00132 * 359.97438 * 7 6 5 9 9 C 1.38239 * 119.99863 * 0.25789 * 8 7 6 10 10 C 1.38232 * 119.99776 * 270.02363 * 5 4 2 11 11 C 1.50694 * 109.47241 * 239.99830 * 2 1 3 12 12 O 1.21279 * 119.99937 * 229.75943 * 11 2 1 13 13 N 1.34780 * 120.00222 * 49.76809 * 11 2 1 14 14 C 1.46753 * 125.32698 * 3.76332 * 13 11 2 15 15 C 1.54126 * 106.61964 * 161.53348 * 14 13 11 16 16 H 1.08997 * 113.47688 * 151.40230 * 15 14 13 17 17 C 1.53967 * 109.47673 * 278.68388 * 15 14 13 18 18 N 1.46770 * 106.62592 * 138.17110 * 17 15 14 19 19 C 1.36936 * 125.33926 * 161.50245 * 18 17 15 20 20 H 1.08000 * 120.00047 * 354.22300 * 19 18 17 21 21 C 1.38812 * 120.00441 * 174.21977 * 19 18 17 22 22 N 1.31624 * 119.99569 * 6.82786 * 21 19 18 23 23 Si 1.86797 * 120.00312 * 186.82687 * 21 19 18 24 24 H 1.48502 * 109.47155 * 94.98581 * 23 21 19 25 25 H 1.48498 * 109.47381 * 214.98770 * 23 21 19 26 26 H 1.48500 * 109.47126 * 334.98731 * 23 21 19 27 27 C 1.46672 * 109.32466 * 341.48691 * 18 17 15 28 28 C 1.53716 * 107.94358 * 0.54234 * 27 18 17 29 29 H 1.08996 * 113.06031 * 140.00192 * 28 27 18 30 30 C 1.46634 * 125.33450 * 184.07591 * 13 11 2 31 31 H 1.08995 * 109.47500 * 299.99574 * 1 2 3 32 32 H 1.08994 * 109.47451 * 60.00429 * 1 2 3 33 33 H 1.09001 * 109.46632 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47252 * 173.71622 * 3 2 1 35 35 H 1.09003 * 109.47119 * 293.71052 * 3 2 1 36 36 H 1.08995 * 109.47560 * 53.71015 * 3 2 1 37 37 H 1.09000 * 109.46933 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47123 * 60.00599 * 4 2 1 39 39 H 1.07996 * 120.00154 * 359.97438 * 6 5 4 40 40 H 1.07994 * 119.99685 * 179.97438 * 7 6 5 41 41 H 1.08000 * 119.99951 * 179.97438 * 8 7 6 42 42 H 1.07997 * 119.99514 * 179.72833 * 9 8 7 43 43 H 1.08000 * 120.00499 * 359.97438 * 10 5 4 44 44 H 1.08999 * 110.01184 * 280.98257 * 14 13 11 45 45 H 1.08997 * 110.00716 * 42.34946 * 14 13 11 46 46 H 1.09001 * 110.02747 * 257.46384 * 17 15 14 47 47 H 1.09006 * 110.02345 * 18.88299 * 17 15 14 48 48 H 0.97002 * 119.99795 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.76823 * 240.91692 * 27 18 17 50 50 H 1.09005 * 109.77066 * 120.16777 * 27 18 17 51 51 H 1.09003 * 109.75747 * 300.47875 * 30 13 11 52 52 H 1.09007 * 109.75905 * 61.19345 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 6 0.3298 -0.3762 3.0441 7 6 -0.1313 0.2759 4.1725 8 6 0.6157 1.2930 4.7367 9 6 1.8212 1.6617 4.1695 10 6 2.2845 1.0067 3.0437 11 6 2.0324 -0.7104 -1.2304 12 8 2.8742 -1.5775 -1.1287 13 7 1.5463 -0.3821 -2.4438 14 6 0.5881 0.6970 -2.7106 15 6 0.6835 1.0088 -4.2170 16 1 -0.2445 1.3929 -4.6405 17 6 1.8897 1.9302 -4.4751 18 7 2.5452 1.4331 -5.6906 19 6 3.4196 2.1459 -6.4670 20 1 3.6042 3.1885 -6.2543 21 6 4.0686 1.5284 -7.5273 22 7 3.7456 0.2995 -7.8708 23 14 5.4002 2.4414 -8.4668 24 1 6.7303 2.0882 -7.9089 25 1 5.3467 2.0573 -9.9002 26 1 5.1821 3.9046 -8.3380 27 6 2.1173 0.0531 -5.9432 28 6 1.1268 -0.3454 -4.8373 29 1 0.2875 -0.9340 -5.2077 30 6 1.8870 -1.0513 -3.7033 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 3.1241 1.4447 0.1125 35 1 1.7714 1.9228 -0.9409 36 1 1.5876 1.9879 0.8283 37 1 3.1300 -0.7207 1.2495 38 1 1.6768 -1.7488 1.2493 39 1 -0.2540 -1.1705 2.6031 40 1 -1.0750 -0.0094 4.6131 41 1 0.2553 1.8027 5.6180 42 1 2.4027 2.4593 4.6078 43 1 3.2281 1.2922 2.6028 44 1 -0.4207 0.3711 -2.4574 45 1 0.8514 1.5813 -2.1304 46 1 1.5510 2.9551 -4.6262 47 1 2.5807 1.8851 -3.6333 48 1 4.1994 -0.1322 -8.6115 49 1 2.9815 -0.6107 -5.9211 50 1 1.6290 -0.0093 -6.9157 51 1 2.9604 -0.9807 -3.8794 52 1 1.5893 -2.0988 -3.6563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049154848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:01 Heat of formation + Delta-G solvation = 5.033328 kcal Electronic energy + Delta-G solvation = -30914.906380 eV Core-core repulsion = 27072.159824 eV Total energy + Delta-G solvation = -3842.746556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03285 -40.52051 -39.57036 -36.89998 -36.60087 -34.09870 -32.51694 -31.77664 -31.36612 -31.29201 -28.35247 -27.80416 -27.49283 -26.90099 -25.16174 -23.29467 -23.12730 -21.95620 -21.58888 -20.85446 -19.98044 -18.82843 -17.70066 -17.46429 -17.17215 -16.80536 -16.70580 -16.27338 -15.84772 -15.78931 -15.55123 -15.07856 -14.92632 -14.68858 -14.47528 -14.22023 -13.96374 -13.81670 -13.69741 -13.55744 -13.48755 -13.29438 -13.26567 -12.89229 -12.86985 -12.75788 -12.72830 -12.53688 -12.02989 -12.00645 -11.92501 -11.87433 -11.81968 -11.73505 -11.57841 -11.48501 -11.29006 -10.77153 -10.63691 -9.71765 -9.62254 -9.51886 -8.88959 -7.88641 -5.22299 0.50135 0.57844 1.42906 1.45493 1.53762 1.57827 1.98694 2.47272 2.94654 3.28151 3.33240 3.43167 3.58193 3.78041 3.81421 3.84336 3.93778 4.09892 4.14055 4.17404 4.22616 4.26556 4.29910 4.38516 4.42241 4.54109 4.55128 4.70619 4.71018 4.75059 4.79500 4.80868 4.84386 4.89893 4.96684 5.00363 5.02788 5.05792 5.10956 5.22988 5.24471 5.25682 5.32391 5.35570 5.39531 5.48092 5.60683 5.65968 5.71138 5.76210 5.80848 6.19580 6.19712 6.54122 7.09368 7.11166 7.78444 8.40311 9.22054 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020912 B = 0.002503 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.595166 B =11185.543347 C =11590.309941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.053 4.053 5 C -0.080 4.080 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.126 4.126 11 C 0.528 3.472 12 O -0.592 6.592 13 N -0.605 5.605 14 C 0.103 3.897 15 C -0.096 4.096 16 H 0.131 0.869 17 C 0.138 3.862 18 N -0.624 5.624 19 C -0.242 4.242 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.975 3.025 24 H -0.293 1.293 25 H -0.293 1.293 26 H -0.264 1.264 27 C 0.196 3.804 28 C -0.109 4.109 29 H 0.120 0.880 30 C 0.125 3.875 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.007 0.993 48 H 0.246 0.754 49 H 0.006 0.994 50 H 0.013 0.987 51 H 0.026 0.974 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 2.497 24.376 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.061 4.061 3 C -0.201 4.201 4 C -0.091 4.091 5 C -0.080 4.080 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.144 4.144 10 C -0.144 4.144 11 C 0.319 3.681 12 O -0.473 6.473 13 N -0.337 5.337 14 C -0.018 4.018 15 C -0.116 4.116 16 H 0.149 0.851 17 C 0.013 3.987 18 N -0.350 5.350 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.803 3.197 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.189 1.189 27 C 0.071 3.929 28 C -0.128 4.128 29 H 0.138 0.862 30 C 0.002 3.998 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.025 0.975 48 H 0.056 0.944 49 H 0.024 0.976 50 H 0.031 0.969 51 H 0.045 0.955 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.465 2.015 24.323 27.875 hybrid contribution 1.693 -0.123 -1.258 2.112 sum -11.772 1.892 23.066 25.965 Atomic orbital electron populations 1.22306 0.90467 1.03354 1.05066 1.20588 0.99000 0.96410 0.90084 1.22042 1.01042 0.93162 1.03838 1.20342 1.00328 0.98196 0.90241 1.19713 0.95521 0.96800 0.96012 1.21228 0.95531 1.00517 0.96528 1.21415 1.00614 0.96249 0.95812 1.21450 0.94941 0.97734 1.00595 1.21381 0.96952 1.00162 0.95877 1.21208 1.00099 0.96346 0.96786 1.21016 0.80365 0.82495 0.84268 1.90661 1.34303 1.35578 1.86763 1.48286 1.45076 1.34476 1.05827 1.22645 0.93758 0.90385 0.94993 1.23057 0.99365 0.94327 0.94827 0.85107 1.21460 0.92372 0.96893 0.87963 1.44532 1.51756 1.11991 1.26746 1.19434 1.15938 0.93956 1.07777 0.89971 1.25655 1.02219 0.97535 1.00483 1.70190 1.44554 1.14356 1.30678 0.85111 0.78970 0.78380 0.77229 1.22031 1.21959 1.18876 1.20738 0.93287 0.85251 0.93653 1.22964 0.98336 0.96952 0.94578 0.86245 1.21675 0.98116 0.96569 0.83441 0.89648 0.89408 0.92139 0.93447 0.91202 0.89135 0.92219 0.91294 0.85239 0.84161 0.84279 0.84707 0.86316 0.87040 0.88377 0.93576 0.97492 0.94431 0.97632 0.96868 0.95522 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 7.55 71.98 0.54 -1.87 16 2 C -0.06 -1.26 0.52 -52.93 -0.03 -1.29 16 3 C -0.14 -2.89 7.52 71.98 0.54 -2.35 16 4 C -0.05 -1.19 3.81 29.85 0.11 -1.08 16 5 C -0.08 -1.45 4.02 -19.86 -0.08 -1.53 16 6 C -0.12 -1.81 7.88 22.27 0.18 -1.63 16 7 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 8 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 9 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 10 C -0.13 -2.17 8.04 22.27 0.18 -1.99 16 11 C 0.53 16.60 6.57 87.65 0.58 17.17 16 12 O -0.59 -24.14 16.29 -3.03 -0.05 -24.19 16 13 N -0.60 -18.16 3.28 -817.28 -2.68 -20.84 16 14 C 0.10 2.28 4.09 86.71 0.35 2.64 16 15 C -0.10 -2.74 4.16 -9.26 -0.04 -2.78 16 16 H 0.13 2.99 8.14 -2.39 -0.02 2.98 16 17 C 0.14 5.33 6.49 86.65 0.56 5.90 16 18 N -0.62 -31.83 3.38 -697.59 -2.36 -34.19 16 19 C -0.24 -13.66 10.24 84.03 0.86 -12.80 16 20 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 21 C -0.07 -3.80 5.48 84.86 0.46 -3.34 16 22 N -0.95 -57.95 10.30 21.65 0.22 -57.72 16 23 Si 0.97 46.57 29.56 68.60 2.03 48.60 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 27 C 0.20 9.59 4.78 86.59 0.41 10.00 16 28 C -0.11 -3.74 4.01 -9.49 -0.04 -3.78 16 29 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 30 C 0.13 4.51 6.22 86.59 0.54 5.05 16 31 H 0.08 1.12 6.17 -2.39 -0.01 1.10 16 32 H 0.09 1.16 3.98 -2.39 -0.01 1.15 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.39 5.08 -2.39 -0.01 1.37 16 36 H 0.09 1.47 6.63 -2.39 -0.02 1.46 16 37 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 38 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 39 H 0.13 1.66 8.03 -2.91 -0.02 1.64 16 40 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 42 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.12 2.02 8.03 -2.91 -0.02 2.00 16 44 H 0.11 1.68 6.45 -2.39 -0.02 1.66 16 45 H 0.10 1.90 4.65 -2.39 -0.01 1.89 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 47 H 0.01 0.30 7.72 -2.38 -0.02 0.28 16 48 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 49 H 0.01 0.32 6.61 -2.39 -0.02 0.30 16 50 H 0.01 0.71 7.52 -2.38 -0.02 0.70 16 51 H 0.03 1.21 7.29 -2.39 -0.02 1.19 16 52 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -75.83 389.00 3.88 -71.95 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.91 Total: 14.35 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.81 Total: 2.05 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.81 Total: -112.75 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.83 3.88 -71.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049154848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.979 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds