Wall clock time and date at job start Wed Apr 1 2020 01:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47389 * 2 1 4 4 C 1.53004 * 109.47269 * 120.00058 * 2 1 3 5 5 C 1.50696 * 109.47145 * 64.99966 * 4 2 1 6 6 C 1.38363 * 119.85283 * 269.72978 * 5 4 2 7 7 C 1.37959 * 120.14445 * 179.72447 * 6 5 4 8 8 C 1.39575 * 119.85201 * 0.54562 * 7 6 5 9 9 C 1.47841 * 120.14549 * 179.70678 * 8 7 6 10 10 O 1.21557 * 119.99806 * 204.85719 * 9 8 7 11 11 N 1.34773 * 119.99900 * 24.85521 * 9 8 7 12 12 C 1.46739 * 125.33032 * 5.17554 * 11 9 8 13 13 C 1.54111 * 106.63152 * 161.56162 * 12 11 9 14 14 H 1.09005 * 113.48906 * 151.37674 * 13 12 11 15 15 C 1.53961 * 109.45809 * 278.65692 * 13 12 11 16 16 N 1.46781 * 106.62901 * 138.17426 * 15 13 12 17 17 C 1.36935 * 125.33998 * 161.48203 * 16 15 13 18 18 H 1.08001 * 120.00185 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00209 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99502 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00258 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47025 * 60.00338 * 21 19 17 23 23 H 1.48502 * 109.46977 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47116 * 300.00268 * 21 19 17 25 25 C 1.46661 * 109.32110 * 341.48240 * 16 15 13 26 26 C 1.53729 * 107.94467 * 0.54533 * 25 16 15 27 27 H 1.09000 * 113.05777 * 139.99817 * 26 25 16 28 28 C 1.46646 * 125.33110 * 185.47877 * 11 9 8 29 29 C 1.39580 * 119.71245 * 359.72484 * 8 7 6 30 30 C 1.37957 * 119.84976 * 0.02562 * 29 8 7 31 31 H 1.09006 * 109.46912 * 299.99900 * 1 2 3 32 32 H 1.08997 * 109.46913 * 59.99829 * 1 2 3 33 33 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47391 * 240.00072 * 2 1 3 35 35 H 1.09005 * 109.46864 * 59.99629 * 3 2 1 36 36 H 1.09000 * 109.47211 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46940 * 300.00242 * 3 2 1 38 38 H 1.08997 * 109.46926 * 185.00450 * 4 2 1 39 39 H 1.08998 * 109.46936 * 304.99893 * 4 2 1 40 40 H 1.08004 * 119.92703 * 359.97438 * 6 5 4 41 41 H 1.08002 * 120.07578 * 180.25103 * 7 6 5 42 42 H 1.09005 * 110.00927 * 280.99739 * 12 11 9 43 43 H 1.09002 * 110.00997 * 42.36344 * 12 11 9 44 44 H 1.09009 * 110.02592 * 257.46526 * 15 13 12 45 45 H 1.08996 * 110.02938 * 18.87810 * 15 13 12 46 46 H 0.97002 * 119.99163 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.77592 * 240.92668 * 25 16 15 48 48 H 1.09007 * 109.77432 * 120.16569 * 25 16 15 49 49 H 1.09007 * 109.75661 * 300.45862 * 28 11 9 50 50 H 1.09003 * 109.75744 * 61.17241 * 28 11 9 51 51 H 1.07999 * 120.07617 * 180.02562 * 29 8 7 52 52 H 1.08007 * 119.92795 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 -2.1733 1.1889 6 6 0.4363 -2.5799 1.7339 7 6 0.0628 -3.9067 1.6769 8 6 0.9087 -4.8415 1.0780 9 6 0.5178 -6.2661 1.0192 10 8 1.3712 -7.1274 0.9326 11 7 -0.7847 -6.6098 1.0617 12 6 -1.9110 -5.6693 1.0571 13 6 -3.1579 -6.4764 0.6463 14 1 -4.0866 -6.0807 1.0577 15 6 -3.1923 -6.6226 -0.8860 16 7 -3.5995 -8.0045 -1.1671 17 6 -4.0963 -8.4567 -2.3603 18 1 -4.2152 -7.7745 -3.1891 19 6 -4.4472 -9.7919 -2.5047 20 7 -4.3027 -10.6232 -1.4945 21 14 -5.1256 -10.4087 -4.1322 22 1 -4.1225 -10.1835 -5.2038 23 1 -5.4210 -11.8602 -4.0271 24 1 -6.3731 -9.6725 -4.4593 25 6 -3.3907 -8.8250 0.0305 26 6 -2.8334 -7.9149 1.1370 27 1 -3.2543 -8.1300 2.1191 28 6 -1.2980 -7.9820 1.1260 29 6 2.1255 -4.4256 0.5352 30 6 2.4847 -3.0949 0.5942 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.1263 -0.6443 1.2952 39 1 1.6054 -0.2617 2.1370 40 1 -0.2151 -1.8563 2.2013 41 1 -0.8799 -4.2222 2.0991 42 1 -2.0483 -5.2469 2.0526 43 1 -1.7290 -4.8729 0.3355 44 1 -3.9155 -5.9265 -1.3112 45 1 -2.2026 -6.4332 -1.3014 46 1 -4.5475 -11.5564 -1.5956 47 1 -2.6775 -9.6201 -0.1869 48 1 -4.3387 -9.2572 0.3512 49 1 -0.9599 -8.5431 0.2547 50 1 -0.9437 -8.4657 2.0362 51 1 2.7844 -5.1439 0.0700 52 1 3.4257 -2.7717 0.1742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049207841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:05 Heat of formation + Delta-G solvation = 13.031945 kcal Electronic energy + Delta-G solvation = -30132.541195 eV Core-core repulsion = 26290.141485 eV Total energy + Delta-G solvation = -3842.399710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.65268 -39.40395 -38.03737 -36.31499 -35.05811 -32.48433 -31.73244 -31.17978 -30.08217 -29.66938 -27.50004 -27.25979 -25.62288 -25.38913 -23.50860 -22.73674 -21.87188 -20.33070 -20.13963 -19.75187 -19.39737 -17.47494 -16.66951 -16.29732 -15.96825 -15.84159 -15.21933 -14.82716 -14.71611 -14.65044 -14.28283 -14.04231 -13.81450 -13.47823 -13.45344 -13.20409 -12.97738 -12.74519 -12.55326 -12.50818 -12.26559 -12.08969 -11.88232 -11.76929 -11.72470 -11.46486 -11.24596 -11.08787 -11.01744 -10.95870 -10.87614 -10.78786 -10.37980 -10.14598 -10.01618 -9.89701 -9.73408 -9.66037 -9.10062 -8.85605 -8.61371 -8.35568 -6.83928 -5.72657 -3.06111 0.79359 1.23498 2.86349 3.15578 3.40732 3.45057 3.46258 3.73496 4.36005 4.44942 4.48629 4.54801 4.61852 4.67332 4.76331 4.82392 4.94969 5.03295 5.10880 5.14879 5.26329 5.30759 5.34668 5.38931 5.45667 5.48550 5.51661 5.57171 5.59508 5.63639 5.67992 5.70213 5.76754 5.84114 5.86311 5.92451 5.97910 6.00983 6.09400 6.16674 6.24024 6.26832 6.33911 6.38559 6.54909 6.61163 6.68396 6.75781 6.83133 7.53243 7.55216 7.70418 7.79848 8.25851 8.30616 9.21746 9.82032 10.45833 11.39005 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.002483 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.300024 B =11272.632295 C =12048.173097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.060 4.060 6 C -0.125 4.125 7 C -0.097 4.097 8 C -0.127 4.127 9 C 0.568 3.432 10 O -0.541 6.541 11 N -0.602 5.602 12 C 0.107 3.893 13 C -0.111 4.111 14 H 0.100 0.900 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.187 3.813 26 C -0.123 4.123 27 H 0.089 0.911 28 C 0.118 3.882 29 C -0.060 4.060 30 C -0.127 4.127 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.017 0.983 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.049 0.951 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.132 0.868 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 22.038 9.149 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.116 4.116 5 C -0.061 4.061 6 C -0.143 4.143 7 C -0.115 4.115 8 C -0.130 4.130 9 C 0.358 3.642 10 O -0.419 6.419 11 N -0.335 5.335 12 C -0.016 4.016 13 C -0.131 4.131 14 H 0.118 0.882 15 C 0.018 3.982 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.062 3.938 26 C -0.142 4.142 27 H 0.107 0.893 28 C -0.003 4.003 29 C -0.079 4.079 30 C -0.145 4.145 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.095 0.905 50 H 0.079 0.921 51 H 0.150 0.850 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.456 21.360 9.000 25.428 hybrid contribution -0.406 -0.421 -0.853 1.034 sum 10.050 20.939 8.147 24.613 Atomic orbital electron populations 1.21937 0.94937 1.02454 1.01631 1.21090 0.96344 0.95808 0.97802 1.21854 1.00887 0.95857 1.01883 1.20744 1.01265 0.90945 0.98664 1.20053 0.94241 0.95512 0.96249 1.20985 0.96550 0.95611 1.01120 1.21917 0.99468 0.92820 0.97300 1.19905 0.96581 0.93025 1.03506 1.17974 0.81057 0.88316 0.76883 1.90772 1.49335 1.51395 1.50415 1.48125 1.04728 1.08721 1.71890 1.22293 0.86280 0.92815 1.00182 1.23015 0.96448 0.95166 0.98474 0.88191 1.21237 0.97197 0.88750 0.90977 1.44205 1.75255 1.02875 1.10493 1.18989 1.35102 0.93178 0.88498 0.90494 1.24801 1.01574 0.96098 0.97898 1.69942 1.53558 1.03903 1.29594 0.86181 0.78806 0.77728 0.82933 1.21174 1.21573 1.21162 1.21039 0.99245 0.90585 0.82910 1.23152 0.93319 0.96677 1.01101 0.89265 1.22013 0.93874 0.82379 1.02078 1.21233 0.94624 0.95919 0.96117 1.20974 1.00072 0.92562 1.00907 0.92741 0.92750 0.91922 0.90977 0.92653 0.92716 0.92567 0.90860 0.90808 0.85613 0.84197 0.91534 0.90489 0.94679 0.96519 0.93631 0.93248 0.93300 0.90452 0.92080 0.84995 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.77 37.16 0.33 -0.72 16 2 C -0.09 -0.60 2.91 -90.62 -0.26 -0.86 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C -0.08 -0.52 4.83 -27.88 -0.13 -0.66 16 5 C -0.06 -0.53 4.71 -104.53 -0.49 -1.03 16 6 C -0.12 -1.13 7.95 -39.64 -0.32 -1.45 16 7 C -0.10 -1.06 8.18 -39.19 -0.32 -1.38 16 8 C -0.13 -1.74 5.67 -104.97 -0.60 -2.34 16 9 C 0.57 9.74 7.63 -12.33 -0.09 9.65 16 10 O -0.54 -11.16 16.93 5.32 0.09 -11.07 16 11 N -0.60 -9.82 3.30 -173.38 -0.57 -10.39 16 12 C 0.11 1.43 4.24 -3.33 -0.01 1.41 16 13 C -0.11 -1.76 4.16 -88.26 -0.37 -2.13 16 14 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 15 C 0.14 2.92 6.49 -3.39 -0.02 2.90 16 16 N -0.60 -15.15 3.38 -171.84 -0.58 -15.74 16 17 C -0.23 -6.38 10.25 -15.06 -0.15 -6.53 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -26.92 10.25 55.49 0.57 -26.35 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 C 0.19 4.41 4.77 -3.58 -0.02 4.39 16 26 C -0.12 -2.17 4.01 -88.61 -0.36 -2.52 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 C 0.12 2.12 6.22 -3.61 -0.02 2.10 16 29 C -0.06 -0.75 9.59 -39.18 -0.38 -1.13 16 30 C -0.13 -1.26 9.68 -39.64 -0.38 -1.64 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.50 6.27 -51.93 -0.33 0.17 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.13 0.88 8.05 -52.48 -0.42 0.45 16 41 H 0.14 1.36 4.42 -52.49 -0.23 1.13 16 42 H 0.07 0.70 6.38 -51.93 -0.33 0.37 16 43 H 0.08 0.97 6.96 -51.93 -0.36 0.61 16 44 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.05 1.31 6.73 -51.93 -0.35 0.96 16 48 H 0.05 1.27 7.38 -51.92 -0.38 0.89 16 49 H 0.08 1.65 7.29 -51.93 -0.38 1.27 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.13 1.69 7.85 -52.49 -0.41 1.28 16 52 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -32.61 400.32 -11.48 -44.09 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.63 Total: -1.01 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.36 Total: -2.71 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.58 Total: -52.48 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.61 -11.48 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049207841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.117 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds