Wall clock time and date at job start Wed Apr 1 2020 01:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47389 * 2 1 4 4 C 1.53004 * 109.47269 * 120.00058 * 2 1 3 5 5 C 1.50696 * 109.47145 * 64.99966 * 4 2 1 6 6 C 1.38363 * 119.85283 * 269.72978 * 5 4 2 7 7 C 1.37959 * 120.14445 * 179.72447 * 6 5 4 8 8 C 1.39575 * 119.85201 * 0.54562 * 7 6 5 9 9 C 1.47841 * 120.14549 * 179.70678 * 8 7 6 10 10 O 1.21557 * 119.99806 * 204.85719 * 9 8 7 11 11 N 1.34773 * 119.99900 * 24.85521 * 9 8 7 12 12 C 1.46739 * 125.33032 * 5.17554 * 11 9 8 13 13 C 1.54111 * 106.63152 * 161.56162 * 12 11 9 14 14 H 1.09005 * 113.48906 * 151.37674 * 13 12 11 15 15 C 1.53961 * 109.45809 * 278.65692 * 13 12 11 16 16 N 1.46781 * 106.62901 * 138.17426 * 15 13 12 17 17 C 1.36935 * 125.33998 * 161.48203 * 16 15 13 18 18 H 1.08001 * 120.00185 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00209 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99502 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00258 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47025 * 60.00338 * 21 19 17 23 23 H 1.48502 * 109.46977 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47116 * 300.00268 * 21 19 17 25 25 C 1.46661 * 109.32110 * 341.48240 * 16 15 13 26 26 C 1.53729 * 107.94467 * 0.54533 * 25 16 15 27 27 H 1.09000 * 113.05777 * 139.99817 * 26 25 16 28 28 C 1.46646 * 125.33110 * 185.47877 * 11 9 8 29 29 C 1.39580 * 119.71245 * 359.72484 * 8 7 6 30 30 C 1.37957 * 119.84976 * 0.02562 * 29 8 7 31 31 H 1.09006 * 109.46912 * 299.99900 * 1 2 3 32 32 H 1.08997 * 109.46913 * 59.99829 * 1 2 3 33 33 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47391 * 240.00072 * 2 1 3 35 35 H 1.09005 * 109.46864 * 59.99629 * 3 2 1 36 36 H 1.09000 * 109.47211 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46940 * 300.00242 * 3 2 1 38 38 H 1.08997 * 109.46926 * 185.00450 * 4 2 1 39 39 H 1.08998 * 109.46936 * 304.99893 * 4 2 1 40 40 H 1.08004 * 119.92703 * 359.97438 * 6 5 4 41 41 H 1.08002 * 120.07578 * 180.25103 * 7 6 5 42 42 H 1.09005 * 110.00927 * 280.99739 * 12 11 9 43 43 H 1.09002 * 110.00997 * 42.36344 * 12 11 9 44 44 H 1.09009 * 110.02592 * 257.46526 * 15 13 12 45 45 H 1.08996 * 110.02938 * 18.87810 * 15 13 12 46 46 H 0.97002 * 119.99163 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.77592 * 240.92668 * 25 16 15 48 48 H 1.09007 * 109.77432 * 120.16569 * 25 16 15 49 49 H 1.09007 * 109.75661 * 300.45862 * 28 11 9 50 50 H 1.09003 * 109.75744 * 61.17241 * 28 11 9 51 51 H 1.07999 * 120.07617 * 180.02562 * 29 8 7 52 52 H 1.08007 * 119.92795 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 -2.1733 1.1889 6 6 0.4363 -2.5799 1.7339 7 6 0.0628 -3.9067 1.6769 8 6 0.9087 -4.8415 1.0780 9 6 0.5178 -6.2661 1.0192 10 8 1.3712 -7.1274 0.9326 11 7 -0.7847 -6.6098 1.0617 12 6 -1.9110 -5.6693 1.0571 13 6 -3.1579 -6.4764 0.6463 14 1 -4.0866 -6.0807 1.0577 15 6 -3.1923 -6.6226 -0.8860 16 7 -3.5995 -8.0045 -1.1671 17 6 -4.0963 -8.4567 -2.3603 18 1 -4.2152 -7.7745 -3.1891 19 6 -4.4472 -9.7919 -2.5047 20 7 -4.3027 -10.6232 -1.4945 21 14 -5.1256 -10.4087 -4.1322 22 1 -4.1225 -10.1835 -5.2038 23 1 -5.4210 -11.8602 -4.0271 24 1 -6.3731 -9.6725 -4.4593 25 6 -3.3907 -8.8250 0.0305 26 6 -2.8334 -7.9149 1.1370 27 1 -3.2543 -8.1300 2.1191 28 6 -1.2980 -7.9820 1.1260 29 6 2.1255 -4.4256 0.5352 30 6 2.4847 -3.0949 0.5942 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.1263 -0.6443 1.2952 39 1 1.6054 -0.2617 2.1370 40 1 -0.2151 -1.8563 2.2013 41 1 -0.8799 -4.2222 2.0991 42 1 -2.0483 -5.2469 2.0526 43 1 -1.7290 -4.8729 0.3355 44 1 -3.9155 -5.9265 -1.3112 45 1 -2.2026 -6.4332 -1.3014 46 1 -4.5475 -11.5564 -1.5956 47 1 -2.6775 -9.6201 -0.1869 48 1 -4.3387 -9.2572 0.3512 49 1 -0.9599 -8.5431 0.2547 50 1 -0.9437 -8.4657 2.0362 51 1 2.7844 -5.1439 0.0700 52 1 3.4257 -2.7717 0.1742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049207841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:04 Heat of formation + Delta-G solvation = -4.763444 kcal Electronic energy + Delta-G solvation = -30133.312861 eV Core-core repulsion = 26290.141485 eV Total energy + Delta-G solvation = -3843.171376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.87795 -40.43506 -39.34497 -36.97418 -36.70918 -34.18956 -32.83513 -32.03065 -31.46301 -31.31562 -28.28022 -27.89503 -27.27546 -26.86361 -24.89761 -23.59571 -22.90441 -21.91333 -20.94820 -20.85608 -20.77266 -19.04397 -18.24299 -17.41857 -17.17878 -16.85060 -16.65984 -16.16136 -15.74808 -15.61376 -15.30985 -15.11702 -15.01881 -14.76840 -14.49435 -14.39134 -14.28100 -13.82680 -13.56627 -13.48617 -13.39109 -13.30232 -13.14344 -12.95647 -12.84504 -12.71228 -12.64482 -12.49568 -12.08255 -11.94783 -11.89234 -11.75243 -11.67447 -11.61912 -11.58239 -11.45687 -11.37047 -11.05186 -10.71407 -9.91130 -9.81765 -9.55448 -8.90522 -7.87367 -5.22686 -0.11114 0.44039 1.43295 1.46808 1.52989 1.70067 1.93099 2.47569 2.82691 3.28966 3.32207 3.42712 3.63618 3.77621 3.82209 3.91100 3.92550 4.01727 4.10538 4.16310 4.18418 4.25795 4.40331 4.46052 4.48894 4.49926 4.53226 4.74562 4.75568 4.78716 4.82977 4.85674 4.89321 4.91707 4.99699 5.06436 5.07751 5.11386 5.13048 5.17549 5.20610 5.33930 5.35115 5.39957 5.43036 5.47281 5.49354 5.54360 5.59724 5.68547 5.76089 5.97697 6.19412 6.43643 7.00782 7.09574 7.77882 8.39305 9.22520 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.002483 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.300024 B =11272.632295 C =12048.173097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.076 4.076 5 C -0.051 4.051 6 C -0.118 4.118 7 C -0.092 4.092 8 C -0.152 4.152 9 C 0.562 3.438 10 O -0.593 6.593 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.095 4.095 14 H 0.136 0.864 15 C 0.138 3.862 16 N -0.624 5.624 17 C -0.245 4.245 18 H 0.081 0.919 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.272 1.272 25 C 0.197 3.803 26 C -0.108 4.108 27 H 0.124 0.876 28 C 0.125 3.875 29 C -0.079 4.079 30 C -0.127 4.127 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.001 0.999 46 H 0.247 0.753 47 H 0.003 0.997 48 H 0.019 0.981 49 H 0.028 0.972 50 H 0.071 0.929 51 H 0.113 0.887 52 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 26.338 10.702 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.113 4.113 5 C -0.051 4.051 6 C -0.136 4.136 7 C -0.110 4.110 8 C -0.155 4.155 9 C 0.353 3.647 10 O -0.475 6.475 11 N -0.335 5.335 12 C -0.011 4.011 13 C -0.114 4.114 14 H 0.154 0.846 15 C 0.013 3.987 16 N -0.351 5.351 17 C -0.374 4.374 18 H 0.099 0.901 19 C -0.259 4.259 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.071 3.929 26 C -0.128 4.128 27 H 0.142 0.858 28 C 0.002 3.998 29 C -0.098 4.098 30 C -0.145 4.145 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.021 0.979 48 H 0.037 0.963 49 H 0.046 0.954 50 H 0.090 0.910 51 H 0.131 0.869 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.699 25.723 10.554 29.447 hybrid contribution -0.108 -1.677 -1.399 2.187 sum 9.591 24.046 9.155 27.459 Atomic orbital electron populations 1.21950 0.95035 1.01902 1.02171 1.21065 0.96238 0.96371 0.97253 1.21831 1.01173 0.95055 1.02217 1.20798 1.02085 0.89125 0.99288 1.20398 0.93744 0.96552 0.94418 1.21340 0.96763 0.95280 1.00203 1.22048 0.99440 0.92962 0.96503 1.19734 0.98062 0.91291 1.06443 1.18660 0.80679 0.89619 0.75696 1.90730 1.50730 1.53176 1.52889 1.48205 1.05456 1.08406 1.71451 1.22543 0.83501 0.91839 1.03202 1.23057 0.99366 0.94218 0.94760 0.84600 1.21447 0.96259 0.86372 0.94648 1.44538 1.74956 1.05316 1.10254 1.19392 1.34545 0.93584 0.89863 0.90150 1.25659 1.02554 0.96439 1.01266 1.70178 1.54674 1.03650 1.31394 0.85157 0.78457 0.76768 0.78983 1.20841 1.21998 1.19751 1.20744 0.96738 0.90915 0.84479 1.23001 0.92571 0.96720 1.00475 0.85775 1.21746 0.94251 0.83478 1.00363 1.21244 0.94512 0.96997 0.97084 1.21179 1.01106 0.91490 1.00754 0.91464 0.93075 0.92908 0.92187 0.91848 0.92306 0.92740 0.89914 0.89142 0.82468 0.82566 0.86723 0.89213 0.93495 0.98087 0.94372 0.97887 0.96278 0.95352 0.91046 0.86864 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.77 71.98 0.63 -0.95 16 2 C -0.09 -0.90 2.91 -10.79 -0.03 -0.93 16 3 C -0.15 -1.13 9.19 71.98 0.66 -0.47 16 4 C -0.08 -0.70 4.83 29.85 0.14 -0.55 16 5 C -0.05 -0.73 4.71 -19.81 -0.09 -0.82 16 6 C -0.12 -1.65 7.95 22.23 0.18 -1.47 16 7 C -0.09 -1.70 8.18 22.53 0.18 -1.52 16 8 C -0.15 -4.07 5.67 -20.09 -0.11 -4.19 16 9 C 0.56 19.68 7.63 86.79 0.66 20.34 16 10 O -0.59 -26.08 16.93 -3.90 -0.07 -26.14 16 11 N -0.60 -19.38 3.30 -820.72 -2.71 -22.09 16 12 C 0.11 2.56 4.24 86.71 0.37 2.93 16 13 C -0.09 -2.74 4.16 -9.26 -0.04 -2.78 16 14 H 0.14 3.09 8.14 -2.38 -0.02 3.07 16 15 C 0.14 5.49 6.49 86.65 0.56 6.05 16 16 N -0.62 -32.33 3.38 -697.57 -2.36 -34.69 16 17 C -0.24 -13.99 10.25 84.03 0.86 -13.13 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.84 5.48 84.86 0.47 -3.38 16 20 N -0.95 -58.11 10.25 21.65 0.22 -57.89 16 21 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 25 C 0.20 9.67 4.77 86.59 0.41 10.08 16 26 C -0.11 -3.75 4.01 -9.49 -0.04 -3.79 16 27 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 28 C 0.12 4.59 6.22 86.58 0.54 5.13 16 29 C -0.08 -2.00 9.59 22.53 0.22 -1.79 16 30 C -0.13 -2.31 9.68 22.23 0.22 -2.10 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.65 6.27 -2.39 -0.01 0.64 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 39 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 40 H 0.16 1.26 8.05 -2.91 -0.02 1.23 16 41 H 0.16 2.26 4.42 -2.91 -0.01 2.25 16 42 H 0.12 1.70 6.38 -2.38 -0.02 1.69 16 43 H 0.09 1.93 6.96 -2.39 -0.02 1.92 16 44 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.00 0.06 7.72 -2.39 -0.02 0.04 16 46 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 47 H 0.00 0.17 6.73 -2.39 -0.02 0.15 16 48 H 0.02 1.04 7.38 -2.38 -0.02 1.02 16 49 H 0.03 1.31 7.29 -2.38 -0.02 1.29 16 50 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.11 3.16 7.85 -2.91 -0.02 3.14 16 52 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -78.05 400.32 3.80 -74.25 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.90 Total: 11.13 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.78 Total: 6.67 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.85 Total: -114.66 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.07 Total: -26.14 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.05 3.80 -74.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049207841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.490 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds