Wall clock time and date at job start Wed Apr 1 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47422 * 2 1 4 4 C 1.52998 * 109.47119 * 239.99541 * 2 1 3 5 5 C 1.50696 * 109.46985 * 60.00647 * 4 2 1 6 6 O 1.21274 * 120.00138 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99752 * 180.02562 * 5 4 2 8 8 C 1.46669 * 125.33956 * 179.97438 * 7 5 4 9 9 C 1.53720 * 107.94830 * 180.54110 * 8 7 5 10 10 H 1.09001 * 112.56275 * 139.71793 * 9 8 7 11 11 C 1.53687 * 109.34385 * 266.25452 * 9 8 7 12 12 N 1.47173 * 107.73449 * 128.69123 * 11 9 8 13 13 C 1.36939 * 125.25806 * 180.39914 * 12 11 9 14 14 H 1.08003 * 119.99870 * 179.14048 * 13 12 11 15 15 C 1.38813 * 119.99781 * 359.13831 * 13 12 11 16 16 N 1.31616 * 119.99918 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99995 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47123 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47297 * 209.99882 * 17 15 13 20 20 H 1.48499 * 109.47367 * 330.00147 * 17 15 13 21 21 C 1.46751 * 109.41219 * 359.65506 * 12 11 9 22 22 C 1.53933 * 106.71811 * 342.40540 * 21 12 11 23 23 H 1.09000 * 113.00985 * 150.83482 * 22 21 12 24 24 C 1.46782 * 125.33942 * 359.68976 * 7 5 4 25 25 C 1.50706 * 109.46664 * 119.99997 * 2 1 3 26 26 C 1.38238 * 119.99775 * 299.99919 * 25 2 1 27 27 C 1.38235 * 119.99712 * 179.97438 * 26 25 2 28 28 C 1.38234 * 120.00220 * 359.97124 * 27 26 25 29 29 C 1.38233 * 120.00037 * 0.28719 * 28 27 26 30 30 C 1.38233 * 120.00212 * 120.01965 * 25 2 1 31 31 H 1.08995 * 109.47209 * 300.00321 * 1 2 3 32 32 H 1.09002 * 109.46703 * 60.00320 * 1 2 3 33 33 H 1.08992 * 109.47234 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47316 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46920 * 299.99547 * 3 2 1 36 36 H 1.09004 * 109.47271 * 59.99510 * 3 2 1 37 37 H 1.09005 * 109.47140 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.47114 * 300.00500 * 4 2 1 39 39 H 1.08999 * 109.77382 * 300.16729 * 8 7 5 40 40 H 1.09008 * 109.76893 * 60.92298 * 8 7 5 41 41 H 1.09003 * 109.76309 * 247.19061 * 11 9 8 42 42 H 1.08999 * 109.76207 * 7.91741 * 11 9 8 43 43 H 0.97003 * 120.00294 * 180.02562 * 16 15 13 44 44 H 1.09000 * 110.01159 * 223.08953 * 21 12 11 45 45 H 1.09001 * 110.00992 * 101.71990 * 21 12 11 46 46 H 1.08999 * 110.02676 * 280.77407 * 24 7 5 47 47 H 1.08996 * 110.02603 * 42.19457 * 24 7 5 48 48 H 1.08005 * 120.00068 * 359.97438 * 26 25 2 49 49 H 1.07999 * 119.99770 * 179.97438 * 27 26 25 50 50 H 1.08002 * 119.99744 * 180.02562 * 28 27 26 51 51 H 1.07998 * 120.00395 * 179.72811 * 29 28 27 52 52 H 1.07999 * 119.99956 * 0.02562 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 8 0.8403 0.9749 -2.3684 7 7 1.8630 -0.4718 -3.7037 8 6 1.4402 0.1252 -4.9749 9 6 2.0239 -0.7250 -6.1149 10 1 1.3211 -0.8615 -6.9368 11 6 3.3651 -0.1234 -6.5634 12 7 4.3642 -1.2040 -6.5611 13 6 5.6844 -1.0607 -6.8956 14 1 6.3482 -1.9114 -6.8508 15 6 6.1693 0.1781 -7.2922 16 7 5.3604 1.2149 -7.3463 17 14 7.9702 0.3738 -7.7478 18 1 8.1440 0.1180 -9.2003 19 1 8.4134 1.7555 -7.4320 20 1 8.7851 -0.5966 -6.9734 21 6 3.7296 -2.4541 -6.1276 22 6 2.4142 -2.0642 -5.4296 23 1 1.6440 -2.8309 -5.5131 24 6 2.7007 -1.6465 -3.9737 25 6 2.0323 -0.7105 1.2305 26 6 1.6982 -0.2381 2.4860 27 6 2.1585 -0.8901 3.6148 28 6 2.9522 -2.0147 3.4880 29 6 3.2907 -2.4839 2.2326 30 6 2.8273 -1.8342 1.1038 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1301 -0.7217 -1.2489 38 1 1.6766 -1.7490 -1.2491 39 1 0.3520 0.1282 -5.0370 40 1 1.8167 1.1458 -5.0462 41 1 3.2723 0.2707 -7.5754 42 1 3.6568 0.6758 -5.8819 43 1 5.6991 2.0804 -7.6238 44 1 4.3806 -2.9804 -5.4295 45 1 3.5206 -3.0853 -6.9914 46 1 3.7534 -1.3891 -3.8567 47 1 2.4365 -2.4573 -3.2949 48 1 1.0777 0.6403 2.5851 49 1 1.8979 -0.5208 4.5956 50 1 3.3114 -2.5243 4.3699 51 1 3.9144 -3.3600 2.1335 52 1 3.0889 -2.2027 0.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049233688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:06 Heat of formation + Delta-G solvation = 18.052758 kcal Electronic energy + Delta-G solvation = -30700.804321 eV Core-core repulsion = 26858.622330 eV Total energy + Delta-G solvation = -3842.181991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.65532 -39.65784 -38.36426 -35.82979 -34.84747 -32.33728 -31.28990 -30.63671 -29.90067 -29.45368 -28.11800 -27.16251 -25.51764 -25.36245 -23.42950 -22.81791 -22.26334 -20.13940 -19.88897 -19.28799 -18.59665 -17.57599 -16.89110 -16.43090 -15.97223 -15.39065 -15.10993 -15.05284 -14.66756 -14.44419 -14.09157 -13.97727 -13.68932 -13.47212 -13.40890 -13.19592 -13.07362 -12.60624 -12.49496 -12.11994 -12.04304 -11.89409 -11.79261 -11.54290 -11.51374 -11.47633 -11.27267 -10.97022 -10.90182 -10.85553 -10.79402 -10.60619 -10.41936 -10.12247 -10.10817 -9.87103 -9.65831 -9.31292 -9.05033 -8.80295 -8.63477 -8.28129 -6.87271 -5.75452 -3.09399 1.24110 1.26768 2.82706 3.23735 3.37685 3.42782 3.44922 3.66047 4.43673 4.46590 4.53665 4.73286 4.84532 4.86773 4.92531 4.93024 4.98934 5.13722 5.21703 5.28539 5.35230 5.44625 5.47645 5.50533 5.57096 5.61061 5.65969 5.68651 5.78309 5.83516 5.86306 5.86699 5.95870 5.97934 6.06745 6.08784 6.15860 6.25650 6.29952 6.36431 6.37998 6.45545 6.49673 6.51765 6.54488 6.57546 6.67000 6.78629 6.87718 7.52911 7.54698 7.78098 7.81297 8.22209 8.40612 9.17794 9.78837 10.42305 11.35976 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.002776 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.838950 B =10082.958232 C =10803.354661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.005 4.005 3 C -0.150 4.150 4 C -0.130 4.130 5 C 0.528 3.472 6 O -0.540 6.540 7 N -0.607 5.607 8 C 0.121 3.879 9 C -0.124 4.124 10 H 0.090 0.910 11 C 0.185 3.815 12 N -0.603 5.603 13 C -0.231 4.231 14 H 0.078 0.922 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.146 3.854 22 C -0.111 4.111 23 H 0.088 0.912 24 C 0.111 3.889 25 C -0.064 4.064 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.130 4.130 29 C -0.117 4.117 30 C -0.125 4.125 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.253 0.747 44 H 0.036 0.964 45 H 0.021 0.979 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -6.817 17.357 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.005 4.005 3 C -0.207 4.207 4 C -0.170 4.170 5 C 0.318 3.682 6 O -0.419 6.419 7 N -0.340 5.340 8 C -0.002 4.002 9 C -0.143 4.143 10 H 0.108 0.892 11 C 0.061 3.939 12 N -0.330 5.330 13 C -0.359 4.359 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.020 3.980 22 C -0.131 4.131 23 H 0.106 0.894 24 C -0.012 4.012 25 C -0.064 4.064 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.148 4.148 29 C -0.135 4.135 30 C -0.143 4.143 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.552 -6.085 17.413 20.772 hybrid contribution 1.139 -0.002 -0.229 1.162 sum -8.412 -6.087 17.184 20.078 Atomic orbital electron populations 1.22115 0.93098 1.01566 1.03740 1.19201 0.96364 0.95283 0.89684 1.22127 1.00459 0.94388 1.03721 1.21830 1.02628 1.00287 0.92235 1.20141 0.80295 0.84456 0.83316 1.90546 1.38928 1.26680 1.85775 1.48318 1.50555 1.29543 1.05546 1.21804 0.98366 0.97862 0.82155 1.23159 1.00459 0.94421 0.96310 0.89185 1.21208 0.82465 0.89974 1.00288 1.44352 1.06416 1.03364 1.78869 1.19024 0.83562 0.94956 1.38364 0.90407 1.24799 0.98113 0.95753 1.01625 1.69950 1.33417 1.00062 1.53325 0.86129 0.84380 0.77044 0.78245 1.21583 1.21688 1.20699 1.21142 0.90876 0.90478 0.95525 1.22929 0.98987 0.97558 0.93596 0.89356 1.22112 0.95801 0.86828 0.96414 1.19927 0.96773 0.95164 0.94515 1.20974 1.00320 1.00042 0.91874 1.21116 0.98268 0.96020 0.98374 1.21118 0.99190 0.97138 0.97401 1.21158 0.99827 0.99924 0.92614 1.21235 0.98196 0.95778 0.99042 0.92975 0.89168 0.93486 0.93247 0.89108 0.92984 0.88656 0.88939 0.92396 0.90942 0.93562 0.93178 0.93687 0.94546 0.96155 0.90334 0.91748 0.86156 0.86323 0.86414 0.86159 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 7.99 37.16 0.30 -1.43 16 2 C 0.00 -0.06 0.60 -155.66 -0.09 -0.15 16 3 C -0.15 -1.91 7.99 37.16 0.30 -1.61 16 4 C -0.13 -1.56 2.46 -27.89 -0.07 -1.63 16 5 C 0.53 8.07 7.25 -10.99 -0.08 7.99 16 6 O -0.54 -9.41 11.65 5.56 0.06 -9.35 16 7 N -0.61 -9.57 3.31 -172.17 -0.57 -10.14 16 8 C 0.12 2.02 6.23 -3.58 -0.02 2.00 16 9 C -0.12 -2.15 4.01 -88.61 -0.36 -2.51 16 10 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 11 C 0.19 4.26 4.77 -3.32 -0.02 4.25 16 12 N -0.60 -14.53 3.39 -171.50 -0.58 -15.11 16 13 C -0.23 -6.19 10.25 -15.06 -0.15 -6.35 16 14 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 15 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 16 N -0.92 -26.49 10.24 55.49 0.57 -25.92 16 17 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.15 2.76 6.41 -3.42 -0.02 2.74 16 22 C -0.11 -1.72 4.14 -88.25 -0.37 -2.08 16 23 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 24 C 0.11 1.64 5.88 -3.29 -0.02 1.62 16 25 C -0.06 -0.70 4.76 -104.62 -0.50 -1.20 16 26 C -0.11 -1.16 8.71 -39.58 -0.34 -1.51 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.13 -1.18 10.05 -39.58 -0.40 -1.57 16 29 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 30 C -0.12 -1.29 8.98 -39.58 -0.36 -1.65 16 31 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 32 H 0.09 1.24 5.51 -51.93 -0.29 0.96 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.36 5.51 -51.93 -0.29 1.08 16 36 H 0.05 0.59 7.39 -51.93 -0.38 0.20 16 37 H 0.10 1.12 7.51 -51.93 -0.39 0.73 16 38 H 0.09 0.95 7.25 -51.93 -0.38 0.58 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.36 7.44 -51.92 -0.39 0.98 16 41 H 0.05 1.20 7.40 -51.93 -0.38 0.82 16 42 H 0.05 1.31 6.58 -51.93 -0.34 0.97 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.04 0.66 7.97 -51.93 -0.41 0.24 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 47 H 0.06 0.75 7.61 -51.93 -0.40 0.35 16 48 H 0.12 1.10 7.10 -52.48 -0.37 0.73 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 52 H 0.13 1.17 5.90 -52.49 -0.31 0.86 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -30.57 393.00 -11.17 -41.74 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.46 Total: 2.51 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.09 Total: -6.37 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.58 Total: -51.17 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.57 -11.17 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049233688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.792 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds