Wall clock time and date at job start Wed Apr 1 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 C 1.52998 * 109.47211 * 239.99114 * 2 1 3 5 5 C 1.50697 * 109.47474 * 293.81067 * 4 2 1 6 6 C 1.37970 * 120.07475 * 271.27589 * 5 4 2 7 7 C 1.38336 * 120.14895 * 179.97438 * 6 5 4 8 8 C 1.38384 * 120.29195 * 0.02562 * 7 6 5 9 9 C 1.37939 * 120.14020 * 359.97438 * 8 7 6 10 10 C 1.39563 * 120.07165 * 91.00026 * 5 4 2 11 11 C 1.47845 * 120.14490 * 359.97438 * 10 5 4 12 12 O 1.21556 * 119.99798 * 44.45239 * 11 10 5 13 13 N 1.34776 * 120.00028 * 224.44356 * 11 10 5 14 14 C 1.46671 * 125.33567 * 185.47920 * 13 11 10 15 15 C 1.53729 * 107.93907 * 180.54558 * 14 13 11 16 16 H 1.09001 * 112.55873 * 139.71972 * 15 14 13 17 17 C 1.53690 * 109.34400 * 266.25151 * 15 14 13 18 18 N 1.46636 * 108.00603 * 127.55694 * 17 15 14 19 19 C 1.36940 * 125.32608 * 180.81712 * 18 17 15 20 20 H 1.08002 * 120.00199 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00204 * 0.02599 * 19 18 17 22 22 N 1.31619 * 119.99960 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00180 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46644 * 60.00256 * 23 21 19 25 25 H 1.48501 * 109.47060 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47277 * 300.00407 * 23 21 19 27 27 C 1.46739 * 109.34483 * 0.83913 * 18 17 15 28 28 C 1.53931 * 106.72115 * 341.65881 * 27 18 17 29 29 H 1.08992 * 113.01376 * 150.83151 * 28 27 18 30 30 C 1.46776 * 125.33793 * 5.17880 * 13 11 10 31 31 H 1.08998 * 109.47031 * 62.15507 * 1 2 3 32 32 H 1.08993 * 109.47527 * 182.15627 * 1 2 3 33 33 H 1.09000 * 109.46759 * 302.15868 * 1 2 3 34 34 H 1.09000 * 109.46785 * 119.99590 * 2 1 3 35 35 H 1.08996 * 109.47767 * 59.99689 * 3 2 1 36 36 H 1.09000 * 109.46958 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.46878 * 299.99533 * 3 2 1 38 38 H 1.09012 * 109.46683 * 53.81173 * 4 2 1 39 39 H 1.08999 * 109.47330 * 173.80621 * 4 2 1 40 40 H 1.07999 * 119.92545 * 359.95883 * 6 5 4 41 41 H 1.08004 * 119.85853 * 180.02562 * 7 6 5 42 42 H 1.07992 * 119.93188 * 180.02562 * 8 7 6 43 43 H 1.08001 * 120.07124 * 180.02562 * 9 8 7 44 44 H 1.08995 * 109.77320 * 300.16561 * 14 13 11 45 45 H 1.09006 * 109.76923 * 60.93104 * 14 13 11 46 46 H 1.08993 * 109.76251 * 247.20034 * 17 15 14 47 47 H 1.09009 * 109.75735 * 7.92136 * 17 15 14 48 48 H 0.96996 * 119.99987 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.01041 * 222.34254 * 27 18 17 50 50 H 1.09002 * 110.00881 * 100.97581 * 27 18 17 51 51 H 1.09001 * 110.02606 * 280.76794 * 30 13 11 52 52 H 1.09000 * 110.02801 * 42.18552 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6667 -2.1795 -1.1748 6 6 2.5133 -3.0796 -0.5609 7 6 2.1719 -4.4183 -0.4914 8 6 0.9807 -4.8642 -1.0366 9 6 0.1254 -3.9748 -1.6531 10 6 0.4612 -2.6215 -1.7216 11 6 -0.4539 -1.6616 -2.3750 12 8 -0.0133 -0.8271 -3.1412 13 7 -1.7766 -1.7119 -2.1212 14 6 -2.7995 -0.8975 -2.7859 15 6 -4.1645 -1.2673 -2.1833 16 1 -4.8036 -0.3977 -2.0306 17 6 -4.8240 -2.3549 -3.0460 18 7 -5.2072 -3.4623 -2.1645 19 6 -5.8090 -4.6241 -2.5685 20 1 -6.0550 -5.3855 -1.8431 21 6 -6.1030 -4.8233 -3.9104 22 7 -5.8029 -3.8957 -4.7946 23 14 -6.9234 -6.4085 -4.4616 24 1 -8.2363 -6.5485 -3.7820 25 1 -7.1288 -6.3742 -5.9319 26 1 -6.0579 -7.5623 -4.1089 27 6 -4.8452 -3.1305 -0.7817 28 6 -3.8105 -1.9932 -0.8555 29 1 -3.8363 -1.3366 0.0141 30 6 -2.4200 -2.5946 -1.1408 31 1 -0.3633 0.4800 -0.9087 32 1 -0.3634 -1.0268 0.0387 33 1 -0.3633 0.5470 0.8700 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4424 -0.0005 37 1 1.6768 1.9562 -0.8900 38 1 1.5890 -0.2756 -2.1358 39 1 3.1244 -0.6264 -1.3063 40 1 3.4448 -2.7382 -0.1340 41 1 2.8380 -5.1187 -0.0094 42 1 0.7198 -5.9105 -0.9786 43 1 -0.8042 -4.3239 -2.0779 44 1 -2.5961 0.1599 -2.6169 45 1 -2.7997 -1.1069 -3.8557 46 1 -5.7097 -1.9502 -3.5356 47 1 -4.1172 -2.7089 -3.7965 48 1 -6.0087 -4.0347 -5.7322 49 1 -4.4087 -4.0006 -0.2914 50 1 -5.7273 -2.7973 -0.2350 51 1 -2.5218 -3.5986 -1.5528 52 1 -1.8321 -2.6249 -0.2235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049242592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:07 Heat of formation + Delta-G solvation = -4.324382 kcal Electronic energy + Delta-G solvation = -31678.628244 eV Core-core repulsion = 27835.475908 eV Total energy + Delta-G solvation = -3843.152337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97089 -40.51021 -39.00309 -37.12663 -36.53847 -34.17370 -32.74143 -32.41274 -31.30751 -31.11619 -28.11984 -27.77206 -27.12857 -27.05138 -25.24660 -23.70007 -22.78693 -21.82160 -21.09888 -20.74258 -20.46465 -18.92516 -18.28847 -17.58821 -17.27420 -16.69500 -16.56799 -16.27957 -15.82027 -15.53756 -15.41102 -15.16324 -15.04587 -14.70410 -14.50503 -14.27664 -14.24325 -13.71098 -13.59637 -13.47912 -13.34183 -13.25949 -13.14832 -12.97800 -12.77766 -12.69255 -12.64553 -12.54692 -12.20073 -12.03294 -11.89570 -11.85939 -11.79700 -11.62629 -11.56341 -11.52412 -11.35296 -10.80342 -10.64998 -9.91472 -9.67027 -9.60709 -8.86664 -7.84249 -5.19213 0.00092 0.40427 1.45461 1.48036 1.54360 1.69779 1.97287 2.49830 2.79047 3.26693 3.34258 3.52239 3.66643 3.75905 3.83151 3.86052 3.95251 4.05962 4.08050 4.15179 4.24595 4.26804 4.32469 4.44606 4.50086 4.51781 4.55758 4.68148 4.75959 4.78687 4.80284 4.82878 4.85700 4.91404 4.96260 5.03146 5.06072 5.06473 5.08437 5.12378 5.24035 5.32831 5.36629 5.38726 5.42400 5.47865 5.49321 5.52608 5.63257 5.66512 5.77605 5.98968 6.21680 6.47714 7.05977 7.11832 7.81322 8.42616 9.25417 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.003453 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.802922 B = 8107.727379 C = 9019.010841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.101 4.101 5 C -0.037 4.037 6 C -0.124 4.124 7 C -0.087 4.087 8 C -0.131 4.131 9 C -0.098 4.098 10 C -0.144 4.144 11 C 0.577 3.423 12 O -0.574 6.574 13 N -0.601 5.601 14 C 0.127 3.873 15 C -0.110 4.110 16 H 0.115 0.885 17 C 0.200 3.800 18 N -0.622 5.622 19 C -0.238 4.238 20 H 0.086 0.914 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.975 3.025 24 H -0.276 1.276 25 H -0.300 1.300 26 H -0.277 1.277 27 C 0.140 3.860 28 C -0.093 4.093 29 H 0.132 0.868 30 C 0.122 3.878 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.004 0.996 47 H 0.008 0.992 48 H 0.244 0.756 49 H 0.048 0.952 50 H 0.031 0.969 51 H 0.053 0.947 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.302 4.838 15.323 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.138 4.138 5 C -0.038 4.038 6 C -0.142 4.142 7 C -0.105 4.105 8 C -0.149 4.149 9 C -0.117 4.117 10 C -0.147 4.147 11 C 0.368 3.632 12 O -0.455 6.455 13 N -0.332 5.332 14 C 0.004 3.996 15 C -0.130 4.130 16 H 0.133 0.867 17 C 0.074 3.926 18 N -0.348 5.348 19 C -0.367 4.367 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.202 1.202 25 H -0.226 1.226 26 H -0.203 1.203 27 C 0.015 3.985 28 C -0.112 4.112 29 H 0.150 0.850 30 C -0.001 4.001 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.026 0.974 48 H 0.053 0.947 49 H 0.066 0.934 50 H 0.049 0.951 51 H 0.071 0.929 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.513 5.184 14.726 23.461 hybrid contribution -1.151 -0.920 -1.452 2.069 sum 16.362 4.264 13.274 21.496 Atomic orbital electron populations 1.21938 0.96212 1.01140 1.01144 1.21025 0.95167 0.96661 0.97156 1.21798 1.01520 0.94952 1.01664 1.21051 1.02146 0.90530 1.00119 1.20048 0.91772 0.96978 0.94967 1.21321 1.00235 0.92952 0.99680 1.21696 0.95996 0.96064 0.96748 1.21350 0.94745 1.00350 0.98473 1.21401 0.99855 0.92318 0.98144 1.19671 0.96639 0.93730 1.04633 1.18285 0.80759 0.83376 0.80736 1.90662 1.76199 1.39648 1.39003 1.48201 1.05321 1.40053 1.39633 1.21677 0.86708 0.95292 0.95927 1.22992 0.95014 0.99234 0.95767 0.86732 1.20738 0.95280 0.85907 0.90630 1.44482 1.70513 1.16749 1.03075 1.19406 1.30908 0.94092 0.92324 0.89613 1.25613 1.02691 1.01321 0.96238 1.70194 1.53810 1.34961 1.01066 0.85206 0.78676 0.79450 0.76347 1.20165 1.22612 1.20253 1.21373 0.95190 0.95674 0.86272 1.22988 0.93100 0.97012 0.98134 0.85003 1.22124 0.93138 0.93100 0.91710 0.94760 0.93557 0.91549 0.89932 0.91648 0.91383 0.94009 0.90830 0.89240 0.82668 0.82242 0.83718 0.87140 0.90490 0.94073 0.97761 0.97418 0.94706 0.93426 0.95092 0.92901 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 7.70 71.98 0.55 -2.80 16 2 C -0.08 -1.58 2.90 -10.80 -0.03 -1.61 16 3 C -0.14 -2.36 9.19 71.98 0.66 -1.70 16 4 C -0.10 -2.32 4.58 29.85 0.14 -2.19 16 5 C -0.04 -0.88 4.73 -19.61 -0.09 -0.98 16 6 C -0.12 -2.19 9.69 22.23 0.22 -1.98 16 7 C -0.09 -1.41 10.04 22.33 0.22 -1.19 16 8 C -0.13 -2.70 10.03 22.23 0.22 -2.48 16 9 C -0.10 -2.70 8.47 22.53 0.19 -2.51 16 10 C -0.14 -4.21 4.32 -20.09 -0.09 -4.30 16 11 C 0.58 20.15 4.29 86.79 0.37 20.52 16 12 O -0.57 -23.28 14.58 -3.89 -0.06 -23.33 16 13 N -0.60 -20.26 3.20 -820.39 -2.63 -22.89 16 14 C 0.13 4.48 6.24 86.59 0.54 5.02 16 15 C -0.11 -3.88 4.02 -9.49 -0.04 -3.91 16 16 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 17 C 0.20 9.68 4.75 86.59 0.41 10.09 16 18 N -0.62 -30.55 3.37 -697.89 -2.35 -32.90 16 19 C -0.24 -12.99 10.25 84.03 0.86 -12.13 16 20 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.72 5.48 84.86 0.47 -3.25 16 22 N -0.95 -57.64 10.25 21.65 0.22 -57.42 16 23 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 C 0.14 5.15 6.37 86.65 0.55 5.70 16 28 C -0.09 -2.77 4.19 -9.26 -0.04 -2.81 16 29 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 30 C 0.12 3.71 4.56 86.72 0.40 4.10 16 31 H 0.03 0.95 7.26 -2.39 -0.02 0.93 16 32 H 0.05 1.13 5.04 -2.39 -0.01 1.12 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 2.23 5.27 -2.38 -0.01 2.22 16 39 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.11 3.44 6.40 -2.91 -0.02 3.42 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.04 1.71 7.44 -2.38 -0.02 1.69 16 46 H 0.00 0.23 7.46 -2.39 -0.02 0.21 16 47 H 0.01 0.43 6.51 -2.38 -0.02 0.42 16 48 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 49 H 0.05 1.67 7.94 -2.39 -0.02 1.65 16 50 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.05 1.91 6.40 -2.39 -0.02 1.89 16 52 H 0.09 2.31 7.02 -2.39 -0.02 2.29 16 Total: -1.00 -71.55 392.47 3.63 -67.92 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.90 Total: 19.31 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.52 Total: 1.61 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.76 Total: -113.21 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.55 3.63 -67.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049242592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.596 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds