Wall clock time and date at job start Wed Apr 1 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47714 * 2 1 4 4 C 1.53006 * 109.47088 * 120.00054 * 2 1 3 5 5 H 1.08998 * 115.54818 * 325.72275 * 4 2 1 6 6 C 1.52999 * 117.49951 * 111.38614 * 4 2 1 7 7 C 1.52999 * 60.03231 * 107.48090 * 6 4 2 8 8 H 1.09000 * 117.49918 * 252.52813 * 7 6 4 9 9 C 1.50695 * 117.49912 * 107.49999 * 7 6 4 10 10 O 1.21285 * 120.00392 * 291.39255 * 9 7 6 11 11 N 1.34773 * 120.00159 * 111.39307 * 9 7 6 12 12 C 1.46501 * 120.00219 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46921 * 180.02562 * 12 11 9 14 14 C 1.37944 * 119.70759 * 259.99523 * 13 12 11 15 15 C 1.38223 * 119.82713 * 180.02562 * 14 13 12 16 16 C 1.38003 * 119.71526 * 0.26410 * 15 14 13 17 17 C 1.38788 * 120.50593 * 359.84043 * 16 15 14 18 18 C 1.37719 * 119.84392 * 359.44076 * 17 16 15 19 19 C 1.50593 * 122.84213 * 181.02099 * 18 17 16 20 20 C 1.52798 * 110.92520 * 340.15491 * 19 18 17 21 21 N 1.47220 * 107.90665 * 47.32306 * 20 19 18 22 22 C 1.36935 * 121.32686 * 115.78106 * 21 20 19 23 23 H 1.08000 * 120.00241 * 335.40688 * 22 21 20 24 24 C 1.38813 * 120.00258 * 155.41274 * 22 21 20 25 25 N 1.31617 * 119.99830 * 344.26306 * 24 22 21 26 26 Si 1.86804 * 120.00043 * 164.26444 * 24 22 21 27 27 H 1.48500 * 109.47104 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47094 * 120.00070 * 26 24 22 29 29 H 1.48506 * 109.46833 * 239.99794 * 26 24 22 30 30 C 1.46682 * 117.34907 * 295.79441 * 21 20 19 31 31 H 1.08999 * 109.46869 * 300.00369 * 1 2 3 32 32 H 1.09003 * 109.46872 * 59.99825 * 1 2 3 33 33 H 1.08995 * 109.47666 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47365 * 239.99555 * 2 1 3 35 35 H 1.08994 * 109.47005 * 300.00274 * 3 2 1 36 36 H 1.09000 * 109.46373 * 59.99629 * 3 2 1 37 37 H 1.08991 * 109.47483 * 179.97438 * 3 2 1 38 38 H 1.08995 * 117.50116 * 214.98326 * 6 4 2 39 39 H 1.09008 * 117.49944 * 359.97438 * 6 4 2 40 40 H 0.97007 * 119.99894 * 0.02562 * 11 9 7 41 41 H 1.09008 * 109.46927 * 300.00041 * 12 11 9 42 42 H 1.08992 * 109.47458 * 60.00010 * 12 11 9 43 43 H 1.08007 * 120.09073 * 0.06250 * 14 13 12 44 44 H 1.08008 * 120.13953 * 180.28455 * 15 14 13 45 45 H 1.08007 * 119.74354 * 179.81887 * 16 15 14 46 46 H 1.09003 * 109.33660 * 219.67321 * 19 18 17 47 47 H 1.08998 * 108.95516 * 100.39723 * 19 18 17 48 48 H 1.09000 * 109.77450 * 287.72010 * 20 19 18 49 49 H 1.08998 * 109.76708 * 166.92561 * 20 19 18 50 50 H 0.97000 * 119.99956 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.43904 * 284.33862 * 30 21 20 52 52 H 1.08998 * 109.43434 * 164.46070 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4305 -0.5987 2.1446 6 6 2.7420 -2.0662 1.0514 7 6 3.5557 -0.8284 1.4342 8 1 4.1889 -0.3849 0.6658 9 6 4.0922 -0.7560 2.8406 10 8 3.3303 -0.6177 3.7740 11 7 5.4188 -0.8449 3.0612 12 6 5.9404 -0.7750 4.4284 13 6 7.4422 -0.8978 4.4000 14 6 8.0347 -2.1092 4.6903 15 6 9.4119 -2.2244 4.6655 16 6 10.1849 -1.1240 4.3555 17 6 9.5899 0.0958 4.0655 18 6 8.2174 0.2084 4.0753 19 6 7.5009 1.4923 3.7492 20 6 8.4352 2.6920 3.8997 21 7 9.6976 2.3714 3.2134 22 6 10.1127 3.0809 2.1182 23 1 9.3902 3.5975 1.5039 24 6 11.4621 3.1360 1.7975 25 7 12.3651 2.7835 2.6879 26 14 11.9966 3.7106 0.1023 27 1 10.7978 4.0467 -0.7072 28 1 12.8574 4.9132 0.2358 29 1 12.7594 2.6280 -0.5696 30 6 10.4930 1.2616 3.7494 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 3.1300 1.4424 0.0005 38 1 2.5948 -2.8282 1.8167 39 1 2.8402 -2.4374 0.0312 40 1 6.0283 -0.9551 2.3146 41 1 5.6626 0.1798 4.8749 42 1 5.5201 -1.5885 5.0196 43 1 7.4241 -2.9656 4.9357 44 1 9.8809 -3.1717 4.8875 45 1 11.2612 -1.2128 4.3389 46 1 6.6518 1.6127 4.4221 47 1 7.1403 1.4454 2.7217 48 1 8.6271 2.8798 4.9561 49 1 7.9811 3.5721 3.4445 50 1 13.3080 2.8217 2.4637 51 1 10.9999 1.5846 4.6586 52 1 11.2340 0.9565 3.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306303.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:58 Heat of formation + Delta-G solvation = 15.401558 kcal Electronic energy + Delta-G solvation = -29875.346644 eV Core-core repulsion = 26033.049688 eV Total energy + Delta-G solvation = -3842.296956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.28796 -39.48651 -37.68163 -35.99826 -34.90495 -33.54016 -32.74843 -31.66681 -30.15388 -28.90122 -27.41473 -26.48713 -25.58085 -23.87641 -23.17657 -23.05861 -22.14397 -20.52812 -20.36569 -19.80078 -19.02754 -17.43649 -16.80857 -16.20509 -15.80730 -15.50032 -15.19049 -14.91353 -14.81391 -14.44642 -14.26640 -14.12353 -13.62106 -13.35663 -13.30484 -13.01804 -12.91159 -12.63804 -12.60292 -12.56732 -12.42117 -12.31315 -11.97139 -11.56392 -11.54129 -11.38076 -11.27947 -10.98416 -10.91919 -10.88453 -10.76152 -10.47943 -10.37443 -10.27709 -10.17397 -9.93574 -9.88137 -9.75230 -9.02559 -8.71979 -8.28595 -7.90535 -6.81880 -5.87339 -3.26995 1.59557 1.85264 2.46543 3.20835 3.32829 3.40841 3.42687 3.63551 4.17060 4.38312 4.42786 4.52356 4.59419 4.78328 4.85725 5.00983 5.04919 5.09883 5.13398 5.24348 5.29613 5.33398 5.39828 5.43731 5.47437 5.49929 5.52637 5.63057 5.64755 5.69739 5.77772 5.81803 5.84463 5.90974 5.97258 6.07964 6.09377 6.12284 6.18879 6.20203 6.41252 6.46393 6.53111 6.63494 6.81415 6.83122 6.92840 7.08618 7.18419 7.42635 7.51713 7.58827 7.72151 8.22184 8.30950 9.11824 9.74196 10.32227 11.23176 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.003011 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.808310 B = 9297.959903 C =11282.555646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.111 4.111 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.189 4.189 8 H 0.124 0.876 9 C 0.543 3.457 10 O -0.547 6.547 11 N -0.716 5.716 12 C 0.166 3.834 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.046 4.046 19 C -0.099 4.099 20 C 0.142 3.858 21 N -0.593 5.593 22 C -0.248 4.248 23 H 0.070 0.930 24 C 0.000 4.000 25 N -0.908 5.908 26 Si 0.904 3.096 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.205 3.795 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.404 0.596 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.060 0.940 50 H 0.254 0.746 51 H 0.041 0.959 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 -10.405 -2.229 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.205 4.205 4 C -0.130 4.130 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.210 4.210 8 H 0.142 0.858 9 C 0.329 3.671 10 O -0.425 6.425 11 N -0.366 5.366 12 C 0.043 3.957 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.046 4.046 19 C -0.138 4.138 20 C 0.015 3.985 21 N -0.315 5.315 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.198 4.198 25 N -0.553 5.553 26 Si 0.734 3.266 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 C 0.079 3.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.238 0.762 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.113 -10.251 -1.581 20.011 hybrid contribution 0.977 0.089 -1.123 1.491 sum -16.136 -10.163 -2.703 19.260 Atomic orbital electron populations 1.21799 0.94645 1.01799 1.01900 1.20751 0.95939 0.96167 0.95695 1.21833 1.01383 0.95449 1.01857 1.22474 0.91911 0.98295 1.00286 0.86508 1.23075 1.01845 0.90912 1.02844 1.22289 0.96353 1.06266 0.96056 0.85832 1.19644 0.82051 0.75708 0.89670 1.90680 1.57365 1.49759 1.44711 1.46032 1.07027 1.73921 1.09649 1.20155 0.89775 1.02465 0.83266 1.19793 0.93865 0.94228 1.04605 1.20753 0.94840 0.96288 1.01781 1.20938 0.93726 0.98408 1.01920 1.21194 0.99976 0.92523 0.99504 1.21041 0.94308 0.96946 0.95588 1.19442 0.92908 0.94603 0.97690 1.21038 0.97947 0.93952 1.00831 1.20912 0.87659 0.94235 0.95677 1.44001 1.21010 1.33992 1.32504 1.19211 0.90816 1.26773 1.00884 0.91234 1.25013 0.95993 1.00518 0.98244 1.70010 1.00274 1.52676 1.32319 0.86188 0.78405 0.77959 0.84039 1.20248 1.21659 1.21537 1.19770 0.90781 0.82961 0.98548 0.92454 0.92585 0.92583 0.91059 0.92635 0.92387 0.92424 0.88398 0.87880 0.76162 0.90489 0.91333 0.86890 0.86664 0.86250 0.91938 0.91243 0.95562 0.92112 0.93545 0.94147 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.07 -0.53 3.07 -90.62 -0.28 -0.81 16 3 C -0.15 -1.26 9.03 37.16 0.34 -0.92 16 4 C -0.11 -1.05 4.66 -90.58 -0.42 -1.47 16 5 H 0.12 1.30 7.64 -51.93 -0.40 0.90 16 6 C -0.15 -1.27 9.88 -26.73 -0.26 -1.53 16 7 C -0.19 -1.91 5.40 -91.74 -0.49 -2.41 16 8 H 0.12 1.12 7.61 -51.93 -0.40 0.73 16 9 C 0.54 7.15 7.61 -10.99 -0.08 7.06 16 10 O -0.55 -9.04 16.26 5.55 0.09 -8.95 16 11 N -0.72 -8.96 5.52 -61.47 -0.34 -9.30 16 12 C 0.17 2.25 5.10 -5.19 -0.03 2.22 16 13 C -0.12 -1.86 5.25 -104.47 -0.55 -2.40 16 14 C -0.12 -1.64 9.65 -39.69 -0.38 -2.03 16 15 C -0.13 -1.90 10.05 -39.67 -0.40 -2.30 16 16 C -0.11 -1.92 9.62 -39.46 -0.38 -2.30 16 17 C -0.08 -1.50 5.82 -104.55 -0.61 -2.11 16 18 C -0.05 -0.81 5.76 -104.61 -0.60 -1.41 16 19 C -0.10 -1.72 5.24 -28.04 -0.15 -1.87 16 20 C 0.14 2.91 6.52 -3.75 -0.02 2.89 16 21 N -0.59 -14.50 2.97 -173.94 -0.52 -15.01 16 22 C -0.25 -6.60 9.69 -15.06 -0.15 -6.75 16 23 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 24 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 25 N -0.91 -25.56 11.10 55.49 0.62 -24.95 16 26 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 C 0.20 4.79 4.85 -5.04 -0.02 4.77 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.70 8.05 -51.92 -0.42 0.28 16 40 H 0.40 4.69 8.46 -40.82 -0.35 4.34 16 41 H 0.08 1.12 6.34 -51.92 -0.33 0.79 16 42 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 43 H 0.11 1.32 8.03 -52.48 -0.42 0.90 16 44 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.12 1.91 8.05 -52.48 -0.42 1.49 16 46 H 0.06 0.98 6.25 -51.93 -0.32 0.66 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 50 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 51 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.10 2.50 6.34 -51.93 -0.33 2.17 16 LS Contribution 413.58 15.07 6.23 6.23 Total: -1.00 -30.14 413.58 -11.97 -42.10 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.78 Total: 5.80 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.24 Total: -12.11 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.24 Total: -49.26 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.14 -11.97 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306303.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.503 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds