Wall clock time and date at job start Wed Apr 1 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47714 * 2 1 4 4 C 1.53006 * 109.47088 * 120.00054 * 2 1 3 5 5 H 1.08998 * 115.54818 * 325.72275 * 4 2 1 6 6 C 1.52999 * 117.49951 * 111.38614 * 4 2 1 7 7 C 1.52999 * 60.03231 * 107.48090 * 6 4 2 8 8 H 1.09000 * 117.49918 * 252.52813 * 7 6 4 9 9 C 1.50695 * 117.49912 * 107.49999 * 7 6 4 10 10 O 1.21285 * 120.00392 * 291.39255 * 9 7 6 11 11 N 1.34773 * 120.00159 * 111.39307 * 9 7 6 12 12 C 1.46501 * 120.00219 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46921 * 180.02562 * 12 11 9 14 14 C 1.37944 * 119.70759 * 259.99523 * 13 12 11 15 15 C 1.38223 * 119.82713 * 180.02562 * 14 13 12 16 16 C 1.38003 * 119.71526 * 0.26410 * 15 14 13 17 17 C 1.38788 * 120.50593 * 359.84043 * 16 15 14 18 18 C 1.37719 * 119.84392 * 359.44076 * 17 16 15 19 19 C 1.50593 * 122.84213 * 181.02099 * 18 17 16 20 20 C 1.52798 * 110.92520 * 340.15491 * 19 18 17 21 21 N 1.47220 * 107.90665 * 47.32306 * 20 19 18 22 22 C 1.36935 * 121.32686 * 115.78106 * 21 20 19 23 23 H 1.08000 * 120.00241 * 335.40688 * 22 21 20 24 24 C 1.38813 * 120.00258 * 155.41274 * 22 21 20 25 25 N 1.31617 * 119.99830 * 344.26306 * 24 22 21 26 26 Si 1.86804 * 120.00043 * 164.26444 * 24 22 21 27 27 H 1.48500 * 109.47104 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47094 * 120.00070 * 26 24 22 29 29 H 1.48506 * 109.46833 * 239.99794 * 26 24 22 30 30 C 1.46682 * 117.34907 * 295.79441 * 21 20 19 31 31 H 1.08999 * 109.46869 * 300.00369 * 1 2 3 32 32 H 1.09003 * 109.46872 * 59.99825 * 1 2 3 33 33 H 1.08995 * 109.47666 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47365 * 239.99555 * 2 1 3 35 35 H 1.08994 * 109.47005 * 300.00274 * 3 2 1 36 36 H 1.09000 * 109.46373 * 59.99629 * 3 2 1 37 37 H 1.08991 * 109.47483 * 179.97438 * 3 2 1 38 38 H 1.08995 * 117.50116 * 214.98326 * 6 4 2 39 39 H 1.09008 * 117.49944 * 359.97438 * 6 4 2 40 40 H 0.97007 * 119.99894 * 0.02562 * 11 9 7 41 41 H 1.09008 * 109.46927 * 300.00041 * 12 11 9 42 42 H 1.08992 * 109.47458 * 60.00010 * 12 11 9 43 43 H 1.08007 * 120.09073 * 0.06250 * 14 13 12 44 44 H 1.08008 * 120.13953 * 180.28455 * 15 14 13 45 45 H 1.08007 * 119.74354 * 179.81887 * 16 15 14 46 46 H 1.09003 * 109.33660 * 219.67321 * 19 18 17 47 47 H 1.08998 * 108.95516 * 100.39723 * 19 18 17 48 48 H 1.09000 * 109.77450 * 287.72010 * 20 19 18 49 49 H 1.08998 * 109.76708 * 166.92561 * 20 19 18 50 50 H 0.97000 * 119.99956 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.43904 * 284.33862 * 30 21 20 52 52 H 1.08998 * 109.43434 * 164.46070 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4305 -0.5987 2.1446 6 6 2.7420 -2.0662 1.0514 7 6 3.5557 -0.8284 1.4342 8 1 4.1889 -0.3849 0.6658 9 6 4.0922 -0.7560 2.8406 10 8 3.3303 -0.6177 3.7740 11 7 5.4188 -0.8449 3.0612 12 6 5.9404 -0.7750 4.4284 13 6 7.4422 -0.8978 4.4000 14 6 8.0347 -2.1092 4.6903 15 6 9.4119 -2.2244 4.6655 16 6 10.1849 -1.1240 4.3555 17 6 9.5899 0.0958 4.0655 18 6 8.2174 0.2084 4.0753 19 6 7.5009 1.4923 3.7492 20 6 8.4352 2.6920 3.8997 21 7 9.6976 2.3714 3.2134 22 6 10.1127 3.0809 2.1182 23 1 9.3902 3.5975 1.5039 24 6 11.4621 3.1360 1.7975 25 7 12.3651 2.7835 2.6879 26 14 11.9966 3.7106 0.1023 27 1 10.7978 4.0467 -0.7072 28 1 12.8574 4.9132 0.2358 29 1 12.7594 2.6280 -0.5696 30 6 10.4930 1.2616 3.7494 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 3.1300 1.4424 0.0005 38 1 2.5948 -2.8282 1.8167 39 1 2.8402 -2.4374 0.0312 40 1 6.0283 -0.9551 2.3146 41 1 5.6626 0.1798 4.8749 42 1 5.5201 -1.5885 5.0196 43 1 7.4241 -2.9656 4.9357 44 1 9.8809 -3.1717 4.8875 45 1 11.2612 -1.2128 4.3389 46 1 6.6518 1.6127 4.4221 47 1 7.1403 1.4454 2.7217 48 1 8.6271 2.8798 4.9561 49 1 7.9811 3.5721 3.4445 50 1 13.3080 2.8217 2.4637 51 1 10.9999 1.5846 4.6586 52 1 11.2340 0.9565 3.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051306303.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:56 Heat of formation + Delta-G solvation = 0.497178 kcal Electronic energy + Delta-G solvation = -29875.992946 eV Core-core repulsion = 26033.049688 eV Total energy + Delta-G solvation = -3842.943258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.37781 -40.68894 -38.53725 -37.63772 -36.06772 -34.47716 -34.21698 -33.06766 -31.78757 -30.40356 -28.04624 -27.63271 -27.37577 -24.88320 -24.71024 -23.77081 -23.73965 -21.76067 -21.26655 -20.64325 -20.55153 -18.65884 -18.38894 -17.37095 -17.05699 -16.73786 -16.52704 -16.10000 -15.93733 -15.76063 -15.47495 -15.38415 -14.97557 -14.73975 -14.47743 -14.14374 -14.01479 -13.96440 -13.69710 -13.52146 -13.40403 -13.33475 -13.25655 -13.00028 -12.82930 -12.77585 -12.53784 -12.39118 -12.16727 -12.14193 -12.04025 -11.85790 -11.63015 -11.55317 -11.34981 -11.22548 -11.04088 -10.85661 -10.69421 -10.09401 -9.56324 -9.33493 -8.79308 -7.91987 -5.34816 0.34138 0.55291 1.45358 1.46985 1.49872 1.57556 2.21187 2.48453 2.86327 2.93154 3.25236 3.59839 3.61962 3.70283 3.79064 3.85767 3.92999 4.01379 4.11716 4.14024 4.22279 4.32658 4.38212 4.40993 4.45980 4.53916 4.60458 4.68520 4.72586 4.75836 4.81388 4.84914 4.87337 4.96082 4.98429 5.04660 5.08674 5.10829 5.13667 5.16372 5.23800 5.29160 5.36275 5.39419 5.43943 5.44501 5.55183 5.58071 5.62680 5.69248 5.93823 6.15383 6.30427 6.53371 7.09032 7.21735 7.77584 8.32932 9.17043 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.003011 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.808310 B = 9297.959903 C =11282.555646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.114 4.114 5 H 0.095 0.905 6 C -0.131 4.131 7 C -0.197 4.197 8 H 0.137 0.863 9 C 0.541 3.459 10 O -0.585 6.585 11 N -0.710 5.710 12 C 0.171 3.829 13 C -0.115 4.115 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.058 4.058 19 C -0.085 4.085 20 C 0.137 3.863 21 N -0.610 5.610 22 C -0.258 4.258 23 H 0.072 0.928 24 C -0.052 4.052 25 N -0.939 5.939 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.292 1.292 29 H -0.289 1.289 30 C 0.221 3.779 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.410 0.590 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.118 0.882 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.021 0.979 49 H 0.062 0.938 50 H 0.251 0.749 51 H 0.005 0.995 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.668 -12.672 -3.492 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.206 4.206 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.169 4.169 7 C -0.218 4.218 8 H 0.155 0.845 9 C 0.329 3.671 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.048 3.952 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.109 4.109 18 C -0.058 4.058 19 C -0.123 4.123 20 C 0.012 3.988 21 N -0.333 5.333 22 C -0.388 4.388 23 H 0.090 0.910 24 C -0.247 4.247 25 N -0.586 5.586 26 Si 0.797 3.203 27 H -0.189 1.189 28 H -0.219 1.219 29 H -0.216 1.216 30 C 0.096 3.904 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.246 0.754 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.136 0.864 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.039 0.961 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.023 0.977 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.043 -12.524 -2.849 22.969 hybrid contribution 1.517 0.761 -0.638 1.813 sum -17.525 -11.763 -3.487 21.393 Atomic orbital electron populations 1.21792 0.94036 1.02249 1.01968 1.20753 0.96424 0.95532 0.95380 1.21844 1.00967 0.96066 1.01744 1.22455 0.91091 0.99530 1.00207 0.88654 1.23176 0.99660 0.90033 1.03995 1.22298 0.96883 1.08159 0.94462 0.84512 1.20125 0.81775 0.74647 0.90503 1.90664 1.58195 1.51571 1.46158 1.45977 1.07075 1.73476 1.09460 1.20063 0.88705 1.02437 0.83963 1.19830 0.94303 0.93746 1.03630 1.21172 0.94976 0.96726 0.99369 1.21276 0.93886 0.98645 1.00012 1.21286 1.00428 0.92587 0.99841 1.20683 0.94741 0.96458 0.99038 1.19447 0.92314 0.95549 0.98538 1.20847 0.97495 0.92619 1.01346 1.21058 0.86847 0.95991 0.94934 1.44249 1.22111 1.34412 1.32576 1.19536 0.91099 1.26530 1.01621 0.91036 1.25784 0.96075 1.01305 1.01544 1.70178 1.00201 1.54154 1.34027 0.85175 0.78047 0.77063 0.79996 1.18939 1.21939 1.21617 1.19325 0.90977 0.84314 0.95834 0.93319 0.91609 0.91954 0.89602 0.91588 0.93684 0.93044 0.88813 0.85398 0.75430 0.91489 0.90212 0.83395 0.83187 0.86368 0.90005 0.91232 0.96099 0.91909 0.94003 0.97740 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.06 -0.86 3.07 -10.79 -0.03 -0.89 16 3 C -0.15 -2.34 9.03 71.98 0.65 -1.69 16 4 C -0.11 -1.97 4.66 -10.77 -0.05 -2.02 16 5 H 0.10 2.09 7.64 -2.39 -0.02 2.07 16 6 C -0.13 -1.88 9.88 30.59 0.30 -1.58 16 7 C -0.20 -3.61 5.40 -11.52 -0.06 -3.67 16 8 H 0.14 2.14 7.61 -2.39 -0.02 2.13 16 9 C 0.54 13.42 7.61 87.66 0.67 14.09 16 10 O -0.59 -18.87 16.26 -3.05 -0.05 -18.92 16 11 N -0.71 -16.23 5.52 -466.78 -2.58 -18.81 16 12 C 0.17 4.23 5.10 85.63 0.44 4.67 16 13 C -0.11 -3.13 5.25 -19.77 -0.10 -3.24 16 14 C -0.10 -2.49 9.65 22.20 0.21 -2.27 16 15 C -0.12 -3.08 10.05 22.21 0.22 -2.86 16 16 C -0.12 -4.09 9.62 22.35 0.21 -3.88 16 17 C -0.11 -4.27 5.82 -19.82 -0.12 -4.39 16 18 C -0.06 -2.00 5.76 -19.86 -0.11 -2.11 16 19 C -0.08 -2.92 5.24 29.75 0.16 -2.76 16 20 C 0.14 5.77 6.52 86.17 0.56 6.34 16 21 N -0.61 -31.05 2.97 -704.23 -2.09 -33.14 16 22 C -0.26 -14.16 9.69 84.03 0.81 -13.34 16 23 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 24 C -0.05 -2.90 4.99 84.86 0.42 -2.47 16 25 N -0.94 -55.30 11.10 21.65 0.24 -55.06 16 26 Si 0.97 44.50 29.58 68.60 2.03 46.53 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 30 C 0.22 10.96 4.85 85.63 0.42 11.37 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.96 7.90 -2.39 -0.02 0.94 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.86 7.29 -2.39 -0.02 0.84 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.13 1.22 8.05 -2.38 -0.02 1.20 16 40 H 0.41 8.52 8.46 -92.70 -0.78 7.74 16 41 H 0.07 1.82 6.34 -2.38 -0.02 1.81 16 42 H 0.08 1.84 7.99 -2.39 -0.02 1.82 16 43 H 0.15 2.61 8.03 -2.91 -0.02 2.58 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.12 3.86 8.05 -2.91 -0.02 3.83 16 46 H 0.08 2.49 6.25 -2.39 -0.01 2.48 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 50 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.06 3.44 6.34 -2.39 -0.02 3.42 16 Total: -1.00 -68.20 413.58 2.94 -65.26 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.12 Total: 25.94 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.26 Total: -11.80 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.43 Total: -107.01 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.20 2.94 -65.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306303.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.761 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds