Wall clock time and date at job start Wed Apr 1 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47484 * 119.99647 * 2 1 3 5 5 H 1.08999 * 115.56540 * 209.45965 * 4 2 1 6 6 C 1.53076 * 117.51093 * 355.16625 * 4 2 1 7 7 C 1.52996 * 59.98459 * 107.47475 * 6 4 2 8 8 H 1.09004 * 117.49796 * 107.50476 * 7 6 4 9 9 C 1.50698 * 117.49653 * 252.49588 * 7 6 4 10 10 O 1.21282 * 120.00021 * 111.00311 * 9 7 6 11 11 N 1.34773 * 120.00110 * 290.73496 * 9 7 6 12 12 C 1.46505 * 119.99996 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47190 * 179.97438 * 12 11 9 14 14 C 1.37958 * 119.70498 * 259.72816 * 13 12 11 15 15 C 1.38221 * 119.82404 * 179.53761 * 14 13 12 16 16 C 1.38005 * 119.71650 * 0.75917 * 15 14 13 17 17 C 1.38802 * 120.50232 * 359.82315 * 16 15 14 18 18 C 1.37712 * 119.85015 * 359.55616 * 17 16 15 19 19 C 1.50600 * 122.86009 * 180.91852 * 18 17 16 20 20 C 1.52784 * 110.85811 * 339.99534 * 19 18 17 21 21 N 1.47226 * 107.91707 * 47.44023 * 20 19 18 22 22 C 1.36929 * 121.33951 * 115.71640 * 21 20 19 23 23 H 1.08002 * 120.00020 * 329.41986 * 22 21 20 24 24 C 1.38811 * 120.00193 * 149.42087 * 22 21 20 25 25 N 1.31621 * 119.99984 * 159.31050 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 339.30425 * 24 22 21 27 27 H 1.48500 * 109.46717 * 96.28238 * 26 24 22 28 28 H 1.48502 * 109.47308 * 216.28510 * 26 24 22 29 29 H 1.48498 * 109.47212 * 336.28582 * 26 24 22 30 30 C 1.46688 * 117.32547 * 295.73644 * 21 20 19 31 31 H 1.09002 * 109.47234 * 306.56218 * 1 2 3 32 32 H 1.09002 * 109.47372 * 66.56610 * 1 2 3 33 33 H 1.08999 * 109.47094 * 186.56478 * 1 2 3 34 34 H 1.08994 * 109.47349 * 240.00378 * 2 1 3 35 35 H 1.08992 * 109.46945 * 175.52941 * 3 2 1 36 36 H 1.09004 * 109.46943 * 295.52918 * 3 2 1 37 37 H 1.08997 * 109.46880 * 55.52753 * 3 2 1 38 38 H 1.09004 * 117.51461 * 359.97438 * 6 4 2 39 39 H 1.09003 * 117.51190 * 214.95678 * 6 4 2 40 40 H 0.97003 * 120.00273 * 359.97438 * 11 9 7 41 41 H 1.09004 * 109.46819 * 299.99269 * 12 11 9 42 42 H 1.09000 * 109.47211 * 59.99652 * 12 11 9 43 43 H 1.07996 * 120.08515 * 359.80830 * 14 13 12 44 44 H 1.07997 * 120.14176 * 180.51071 * 15 14 13 45 45 H 1.07993 * 119.74590 * 179.79627 * 16 15 14 46 46 H 1.09000 * 109.19813 * 100.35105 * 19 18 17 47 47 H 1.09003 * 109.19840 * 219.68472 * 19 18 17 48 48 H 1.08995 * 109.77215 * 167.04551 * 20 19 18 49 49 H 1.09006 * 109.77060 * 287.78231 * 20 19 18 50 50 H 0.97006 * 120.00101 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.43906 * 164.45162 * 30 21 20 52 52 H 1.09001 * 109.43733 * 284.33245 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0040 -0.3814 1.6279 6 6 1.0003 -1.1808 2.2744 7 6 1.7100 -2.2084 1.3906 8 1 2.4570 -2.8472 1.8619 9 6 0.9075 -2.8509 0.2887 10 8 1.1564 -2.5959 -0.8706 11 7 -0.0833 -3.7129 0.5913 12 6 -0.8632 -4.3379 -0.4800 13 6 -1.8997 -5.2522 0.1209 14 6 -1.6710 -6.6121 0.1607 15 6 -2.6158 -7.4519 0.7199 16 6 -3.7888 -6.9249 1.2206 17 6 -4.0251 -5.5580 1.1701 18 6 -3.0793 -4.7186 0.6248 19 6 -3.2563 -3.2247 0.5538 20 6 -4.7306 -2.8449 0.6819 21 7 -5.2922 -3.5872 1.8225 22 6 -5.7558 -2.9385 2.9357 23 1 -5.3122 -2.0015 3.2386 24 6 -6.7959 -3.4850 3.6748 25 7 -6.9785 -3.1177 4.9255 26 14 -7.9367 -4.7416 2.8944 27 1 -7.4776 -6.1103 3.2425 28 1 -9.3177 -4.5388 3.4015 29 1 -7.9217 -4.5748 1.4189 30 6 -5.3346 -5.0498 1.7189 31 1 -0.3634 0.6122 0.8254 32 1 -0.3634 0.4087 -0.9429 33 1 -0.3633 -1.0209 0.1175 34 1 1.8933 -0.5137 -0.8900 35 1 3.1269 1.4436 0.0801 36 1 1.7435 1.9328 -0.9274 37 1 1.6126 1.9790 0.8472 38 1 -0.0470 -0.9691 2.0590 39 1 1.2805 -1.1434 3.3272 40 1 -0.2797 -3.9202 1.5184 41 1 -1.3575 -3.5647 -1.0681 42 1 -0.1992 -4.9152 -1.1234 43 1 -0.7544 -7.0189 -0.2400 44 1 -2.4384 -8.5164 0.7612 45 1 -4.5287 -7.5809 1.6546 46 1 -2.6944 -2.7584 1.3631 47 1 -2.8754 -2.8637 -0.4015 48 1 -4.8213 -1.7733 0.8588 49 1 -5.2614 -3.1140 -0.2315 50 1 -7.7056 -3.4993 5.4419 51 1 -5.5048 -5.4787 2.7064 52 1 -6.1456 -5.3428 1.0522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:02 Heat of formation + Delta-G solvation = 27.718829 kcal Electronic energy + Delta-G solvation = -30801.134536 eV Core-core repulsion = 26959.371697 eV Total energy + Delta-G solvation = -3841.762839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.57273 -39.72908 -37.53031 -36.25827 -34.97615 -33.32002 -32.71970 -31.86842 -30.52514 -29.36216 -27.30425 -26.51962 -25.61652 -23.80810 -23.62846 -23.58730 -22.05770 -20.70948 -20.22586 -19.30121 -19.26426 -17.22973 -16.91221 -16.38979 -16.01783 -15.77956 -15.40168 -15.12791 -14.84668 -14.64148 -14.48850 -14.09919 -13.88773 -13.57426 -13.15750 -13.09661 -12.89037 -12.80203 -12.58012 -12.44154 -12.38059 -12.28223 -12.06034 -11.82704 -11.58040 -11.54376 -11.28501 -11.12543 -11.09025 -10.91817 -10.69027 -10.51094 -10.41471 -10.30726 -10.13603 -9.98987 -9.65076 -9.62948 -9.05283 -8.70111 -8.46692 -8.19666 -7.02183 -6.03860 -3.42837 1.42468 1.65751 2.58814 3.14557 3.26546 3.42769 3.45347 3.55253 4.01425 4.40385 4.46104 4.60508 4.68324 4.75575 4.84809 4.91142 4.98030 5.04166 5.08248 5.12297 5.24528 5.26235 5.35015 5.36692 5.52450 5.56684 5.58856 5.60590 5.67383 5.75511 5.78894 5.83064 5.85599 5.90719 5.94262 5.94596 5.98489 6.10972 6.23412 6.25135 6.29319 6.30445 6.34206 6.42211 6.45372 6.52259 6.66376 6.71045 6.80201 7.03766 7.24384 7.50104 7.88214 8.21002 8.26171 8.83945 9.62660 10.03599 11.11989 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.003421 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.025989 B = 8182.182028 C = 9721.991655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.143 4.143 4 C -0.112 4.112 5 H 0.110 0.890 6 C -0.165 4.165 7 C -0.190 4.190 8 H 0.128 0.872 9 C 0.547 3.453 10 O -0.538 6.538 11 N -0.719 5.719 12 C 0.165 3.835 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.129 4.129 16 C -0.114 4.114 17 C -0.076 4.076 18 C -0.038 4.038 19 C -0.100 4.100 20 C 0.143 3.857 21 N -0.602 5.602 22 C -0.260 4.260 23 H 0.086 0.914 24 C 0.030 3.970 25 N -0.903 5.903 26 Si 0.874 3.126 27 H -0.287 1.287 28 H -0.299 1.299 29 H -0.268 1.268 30 C 0.161 3.839 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.404 0.596 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.030 0.970 50 H 0.264 0.736 51 H 0.081 0.919 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 -0.681 -8.525 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.131 4.131 5 H 0.128 0.872 6 C -0.202 4.202 7 C -0.211 4.211 8 H 0.146 0.854 9 C 0.333 3.667 10 O -0.415 6.415 11 N -0.370 5.370 12 C 0.043 3.957 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.148 4.148 16 C -0.133 4.133 17 C -0.078 4.078 18 C -0.039 4.039 19 C -0.138 4.138 20 C 0.017 3.983 21 N -0.325 5.325 22 C -0.388 4.388 23 H 0.103 0.897 24 C -0.170 4.170 25 N -0.545 5.545 26 Si 0.703 3.297 27 H -0.214 1.214 28 H -0.227 1.227 29 H -0.193 1.193 30 C 0.036 3.964 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.239 0.761 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.099 0.901 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.896 -0.461 -9.200 19.244 hybrid contribution -0.816 -1.202 0.323 1.489 sum 16.080 -1.663 -8.877 18.442 Atomic orbital electron populations 1.21968 0.95139 1.01747 1.01551 1.20746 0.95806 0.95373 0.97145 1.21820 1.00590 0.95949 1.01678 1.22459 0.99878 0.92619 0.98126 0.87203 1.23351 0.99395 1.00733 0.96740 1.22253 1.03972 0.93880 1.00980 0.85429 1.19596 0.79597 0.78234 0.89246 1.90671 1.68253 1.61905 1.20682 1.46123 1.34705 1.45550 1.10657 1.20144 0.91273 0.95066 0.89241 1.19816 0.95555 0.93938 1.02960 1.20820 0.99110 0.92739 1.00306 1.20938 0.94463 0.99290 1.00060 1.21186 0.97478 0.94834 0.99756 1.20506 0.97571 0.92843 0.96885 1.19421 0.92370 0.95967 0.96102 1.21030 1.00557 0.91215 1.01045 1.20977 0.90422 0.96720 0.90140 1.44260 1.72387 0.99535 1.16352 1.18825 1.12481 1.07454 1.00067 0.89685 1.25354 0.97497 0.98252 0.95893 1.69839 1.32269 1.45484 1.06955 0.87021 0.81242 0.81184 0.80276 1.21418 1.22678 1.19267 1.20285 0.90989 0.85783 0.99361 0.92656 0.92768 0.92576 0.88981 0.92894 0.92728 0.92739 0.87303 0.87994 0.76111 0.90461 0.91207 0.86562 0.86386 0.86326 0.90667 0.91568 0.91165 0.95232 0.92648 0.90070 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.43 37.15 0.28 -1.39 16 2 C -0.07 -0.76 2.45 -90.62 -0.22 -0.98 16 3 C -0.14 -1.25 9.16 37.16 0.34 -0.91 16 4 C -0.11 -1.06 5.72 -90.58 -0.52 -1.58 16 5 H 0.11 0.88 8.08 -51.93 -0.42 0.46 16 6 C -0.17 -1.54 9.36 -26.69 -0.25 -1.79 16 7 C -0.19 -1.88 6.14 -91.77 -0.56 -2.44 16 8 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 9 C 0.55 6.70 5.05 -10.99 -0.06 6.65 16 10 O -0.54 -8.14 14.23 5.56 0.08 -8.07 16 11 N -0.72 -8.35 5.53 -61.47 -0.34 -8.69 16 12 C 0.17 2.05 5.11 -5.19 -0.03 2.02 16 13 C -0.12 -1.67 5.26 -104.47 -0.55 -2.22 16 14 C -0.11 -1.41 9.65 -39.69 -0.38 -1.79 16 15 C -0.13 -1.70 10.05 -39.67 -0.40 -2.10 16 16 C -0.11 -1.77 9.62 -39.46 -0.38 -2.15 16 17 C -0.08 -1.38 5.82 -104.55 -0.61 -1.99 16 18 C -0.04 -0.62 5.76 -104.61 -0.60 -1.22 16 19 C -0.10 -1.61 5.24 -28.04 -0.15 -1.76 16 20 C 0.14 2.74 6.51 -3.76 -0.02 2.71 16 21 N -0.60 -13.90 2.67 -173.94 -0.46 -14.37 16 22 C -0.26 -7.05 10.06 -15.06 -0.15 -7.20 16 23 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 24 C 0.03 0.84 5.21 -17.43 -0.09 0.75 16 25 N -0.90 -26.98 13.97 55.49 0.78 -26.21 16 26 Si 0.87 21.59 24.43 -169.99 -4.15 17.44 16 27 H -0.29 -6.84 6.95 56.52 0.39 -6.44 16 28 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.27 -6.49 6.42 56.52 0.36 -6.13 16 30 C 0.16 3.45 4.04 -5.04 -0.02 3.43 16 31 H 0.05 0.59 7.60 -51.93 -0.39 0.20 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.70 4.72 -51.93 -0.25 0.46 16 34 H 0.09 1.16 6.62 -51.93 -0.34 0.81 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.11 1.15 5.85 -51.93 -0.30 0.84 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 4.48 8.46 -40.82 -0.35 4.13 16 41 H 0.08 1.01 6.33 -51.93 -0.33 0.69 16 42 H 0.07 0.84 7.98 -51.93 -0.41 0.42 16 43 H 0.12 1.22 8.02 -52.49 -0.42 0.80 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.71 8.05 -52.49 -0.42 1.28 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 0.94 6.27 -51.93 -0.33 0.62 16 48 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.08 1.88 5.89 -51.93 -0.31 1.57 16 52 H 0.04 0.83 6.28 -51.93 -0.33 0.51 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -30.76 396.65 -10.92 -41.68 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.42 Total: 6.20 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -4.38 Total: -13.97 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.03 Total: -49.26 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.76 -10.92 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.403 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds