Wall clock time and date at job start Wed Apr 1 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47484 * 119.99647 * 2 1 3 5 5 H 1.08999 * 115.56540 * 209.45965 * 4 2 1 6 6 C 1.53076 * 117.51093 * 355.16625 * 4 2 1 7 7 C 1.52996 * 59.98459 * 107.47475 * 6 4 2 8 8 H 1.09004 * 117.49796 * 107.50476 * 7 6 4 9 9 C 1.50698 * 117.49653 * 252.49588 * 7 6 4 10 10 O 1.21282 * 120.00021 * 111.00311 * 9 7 6 11 11 N 1.34773 * 120.00110 * 290.73496 * 9 7 6 12 12 C 1.46505 * 119.99996 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47190 * 179.97438 * 12 11 9 14 14 C 1.37958 * 119.70498 * 259.72816 * 13 12 11 15 15 C 1.38221 * 119.82404 * 179.53761 * 14 13 12 16 16 C 1.38005 * 119.71650 * 0.75917 * 15 14 13 17 17 C 1.38802 * 120.50232 * 359.82315 * 16 15 14 18 18 C 1.37712 * 119.85015 * 359.55616 * 17 16 15 19 19 C 1.50600 * 122.86009 * 180.91852 * 18 17 16 20 20 C 1.52784 * 110.85811 * 339.99534 * 19 18 17 21 21 N 1.47226 * 107.91707 * 47.44023 * 20 19 18 22 22 C 1.36929 * 121.33951 * 115.71640 * 21 20 19 23 23 H 1.08002 * 120.00020 * 329.41986 * 22 21 20 24 24 C 1.38811 * 120.00193 * 149.42087 * 22 21 20 25 25 N 1.31621 * 119.99984 * 159.31050 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 339.30425 * 24 22 21 27 27 H 1.48500 * 109.46717 * 96.28238 * 26 24 22 28 28 H 1.48502 * 109.47308 * 216.28510 * 26 24 22 29 29 H 1.48498 * 109.47212 * 336.28582 * 26 24 22 30 30 C 1.46688 * 117.32547 * 295.73644 * 21 20 19 31 31 H 1.09002 * 109.47234 * 306.56218 * 1 2 3 32 32 H 1.09002 * 109.47372 * 66.56610 * 1 2 3 33 33 H 1.08999 * 109.47094 * 186.56478 * 1 2 3 34 34 H 1.08994 * 109.47349 * 240.00378 * 2 1 3 35 35 H 1.08992 * 109.46945 * 175.52941 * 3 2 1 36 36 H 1.09004 * 109.46943 * 295.52918 * 3 2 1 37 37 H 1.08997 * 109.46880 * 55.52753 * 3 2 1 38 38 H 1.09004 * 117.51461 * 359.97438 * 6 4 2 39 39 H 1.09003 * 117.51190 * 214.95678 * 6 4 2 40 40 H 0.97003 * 120.00273 * 359.97438 * 11 9 7 41 41 H 1.09004 * 109.46819 * 299.99269 * 12 11 9 42 42 H 1.09000 * 109.47211 * 59.99652 * 12 11 9 43 43 H 1.07996 * 120.08515 * 359.80830 * 14 13 12 44 44 H 1.07997 * 120.14176 * 180.51071 * 15 14 13 45 45 H 1.07993 * 119.74590 * 179.79627 * 16 15 14 46 46 H 1.09000 * 109.19813 * 100.35105 * 19 18 17 47 47 H 1.09003 * 109.19840 * 219.68472 * 19 18 17 48 48 H 1.08995 * 109.77215 * 167.04551 * 20 19 18 49 49 H 1.09006 * 109.77060 * 287.78231 * 20 19 18 50 50 H 0.97006 * 120.00101 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.43906 * 164.45162 * 30 21 20 52 52 H 1.09001 * 109.43733 * 284.33245 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0040 -0.3814 1.6279 6 6 1.0003 -1.1808 2.2744 7 6 1.7100 -2.2084 1.3906 8 1 2.4570 -2.8472 1.8619 9 6 0.9075 -2.8509 0.2887 10 8 1.1564 -2.5959 -0.8706 11 7 -0.0833 -3.7129 0.5913 12 6 -0.8632 -4.3379 -0.4800 13 6 -1.8997 -5.2522 0.1209 14 6 -1.6710 -6.6121 0.1607 15 6 -2.6158 -7.4519 0.7199 16 6 -3.7888 -6.9249 1.2206 17 6 -4.0251 -5.5580 1.1701 18 6 -3.0793 -4.7186 0.6248 19 6 -3.2563 -3.2247 0.5538 20 6 -4.7306 -2.8449 0.6819 21 7 -5.2922 -3.5872 1.8225 22 6 -5.7558 -2.9385 2.9357 23 1 -5.3122 -2.0015 3.2386 24 6 -6.7959 -3.4850 3.6748 25 7 -6.9785 -3.1177 4.9255 26 14 -7.9367 -4.7416 2.8944 27 1 -7.4776 -6.1103 3.2425 28 1 -9.3177 -4.5388 3.4015 29 1 -7.9217 -4.5748 1.4189 30 6 -5.3346 -5.0498 1.7189 31 1 -0.3634 0.6122 0.8254 32 1 -0.3634 0.4087 -0.9429 33 1 -0.3633 -1.0209 0.1175 34 1 1.8933 -0.5137 -0.8900 35 1 3.1269 1.4436 0.0801 36 1 1.7435 1.9328 -0.9274 37 1 1.6126 1.9790 0.8472 38 1 -0.0470 -0.9691 2.0590 39 1 1.2805 -1.1434 3.3272 40 1 -0.2797 -3.9202 1.5184 41 1 -1.3575 -3.5647 -1.0681 42 1 -0.1992 -4.9152 -1.1234 43 1 -0.7544 -7.0189 -0.2400 44 1 -2.4384 -8.5164 0.7612 45 1 -4.5287 -7.5809 1.6546 46 1 -2.6944 -2.7584 1.3631 47 1 -2.8754 -2.8637 -0.4015 48 1 -4.8213 -1.7733 0.8588 49 1 -5.2614 -3.1140 -0.2315 50 1 -7.7056 -3.4993 5.4419 51 1 -5.5048 -5.4787 2.7064 52 1 -6.1456 -5.3428 1.0522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051306304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:00 Heat of formation + Delta-G solvation = 10.685250 kcal Electronic energy + Delta-G solvation = -30801.873167 eV Core-core repulsion = 26959.371697 eV Total energy + Delta-G solvation = -3842.501470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55915 -40.88194 -38.46407 -37.78750 -36.04827 -34.51989 -34.10973 -33.23245 -32.09152 -30.69735 -28.13025 -27.61122 -27.32050 -25.17484 -24.67859 -24.37090 -23.63328 -21.85059 -21.14507 -20.82394 -20.10212 -18.77917 -18.13425 -17.58078 -17.01759 -16.88229 -16.73388 -16.39724 -16.17412 -15.95604 -15.73244 -15.39024 -14.97685 -14.79229 -14.61950 -14.31686 -14.13242 -14.08446 -13.84828 -13.61064 -13.53480 -13.41773 -13.19964 -13.04453 -12.79250 -12.64802 -12.63390 -12.40724 -12.29530 -12.16165 -11.92405 -11.85540 -11.71479 -11.61641 -11.44886 -11.28993 -10.93519 -10.76272 -10.57552 -10.04010 -9.62291 -9.44251 -8.93474 -8.21308 -5.56500 0.29409 0.48287 1.27393 1.38465 1.47238 1.65025 2.21706 2.38488 2.75122 2.90251 2.99971 3.28529 3.60512 3.66468 3.81909 3.83714 3.92276 3.94474 4.07291 4.10090 4.24151 4.25466 4.31370 4.34517 4.45053 4.49486 4.52466 4.54490 4.60663 4.70974 4.77047 4.79215 4.80024 4.83436 4.92221 4.95531 4.98549 5.04250 5.06865 5.08026 5.12778 5.22340 5.31551 5.31903 5.36404 5.46727 5.55535 5.57891 5.61364 5.75016 5.85453 6.08497 6.12074 6.56100 6.84892 7.26863 7.55024 8.01119 8.98525 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.003421 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.025989 B = 8182.182028 C = 9721.991655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.113 4.113 5 H 0.131 0.869 6 C -0.161 4.161 7 C -0.193 4.193 8 H 0.149 0.851 9 C 0.546 3.454 10 O -0.569 6.569 11 N -0.714 5.714 12 C 0.171 3.829 13 C -0.114 4.114 14 C -0.100 4.100 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.106 4.106 18 C -0.053 4.053 19 C -0.086 4.086 20 C 0.138 3.862 21 N -0.616 5.616 22 C -0.249 4.249 23 H 0.054 0.946 24 C -0.024 4.024 25 N -0.950 5.950 26 Si 0.934 3.066 27 H -0.273 1.273 28 H -0.305 1.305 29 H -0.261 1.261 30 C 0.164 3.836 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.408 0.592 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.125 0.875 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.263 0.737 51 H 0.057 0.943 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.182 -2.474 -9.741 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.197 4.197 4 C -0.131 4.131 5 H 0.148 0.852 6 C -0.198 4.198 7 C -0.213 4.213 8 H 0.167 0.833 9 C 0.334 3.666 10 O -0.449 6.449 11 N -0.365 5.365 12 C 0.048 3.952 13 C -0.114 4.114 14 C -0.118 4.118 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.108 4.108 18 C -0.053 4.053 19 C -0.124 4.124 20 C 0.014 3.986 21 N -0.340 5.340 22 C -0.378 4.378 23 H 0.071 0.929 24 C -0.220 4.220 25 N -0.596 5.596 26 Si 0.762 3.238 27 H -0.200 1.200 28 H -0.234 1.234 29 H -0.186 1.186 30 C 0.039 3.961 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.243 0.757 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.143 0.857 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.083 0.917 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.246 -2.274 -10.445 22.015 hybrid contribution -1.441 -0.623 0.635 1.694 sum 17.804 -2.897 -9.811 20.534 Atomic orbital electron populations 1.21944 0.96106 1.00788 1.01331 1.20687 0.94950 0.96469 0.96909 1.21787 1.01367 0.94656 1.01841 1.22562 1.00748 0.92205 0.97584 0.85156 1.23342 0.98532 1.00255 0.97624 1.22324 1.04240 0.94318 1.00459 0.83308 1.19979 0.79450 0.77803 0.89364 1.90662 1.69194 1.62892 1.22115 1.46083 1.34384 1.45335 1.10686 1.20069 0.91114 0.94736 0.89312 1.19846 0.94621 0.94807 1.02140 1.21219 0.99918 0.92017 0.98653 1.21289 0.93036 1.01072 0.98296 1.21330 0.98871 0.93796 1.00094 1.20247 0.96660 0.94399 0.99452 1.19425 0.93340 0.95490 0.97086 1.20837 0.97971 0.91833 1.01792 1.21138 0.92333 0.96166 0.89011 1.44353 1.72534 1.00719 1.16393 1.18747 1.11788 1.06385 1.00895 0.92867 1.25916 0.99012 1.00903 0.96133 1.69957 1.33254 1.47987 1.08371 0.86033 0.78587 0.79654 0.79489 1.19953 1.23381 1.18593 1.20139 0.93293 0.84419 0.98257 0.92286 0.93384 0.94005 0.91160 0.91641 0.92835 0.92295 0.88901 0.86247 0.75675 0.91386 0.90160 0.83369 0.83026 0.85707 0.91484 0.89563 0.91695 0.94294 0.92783 0.92471 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.43 71.98 0.53 -2.74 16 2 C -0.07 -1.45 2.45 -10.79 -0.03 -1.48 16 3 C -0.14 -2.24 9.16 71.98 0.66 -1.59 16 4 C -0.11 -1.92 5.72 -10.77 -0.06 -1.99 16 5 H 0.13 1.70 8.08 -2.39 -0.02 1.69 16 6 C -0.16 -2.73 9.36 30.62 0.29 -2.44 16 7 C -0.19 -3.44 6.14 -11.54 -0.07 -3.51 16 8 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 9 C 0.55 12.64 5.05 87.66 0.44 13.08 16 10 O -0.57 -16.76 14.23 -3.03 -0.04 -16.80 16 11 N -0.71 -15.33 5.53 -466.77 -2.58 -17.91 16 12 C 0.17 3.83 5.11 85.63 0.44 4.27 16 13 C -0.11 -2.80 5.26 -19.76 -0.10 -2.91 16 14 C -0.10 -2.11 9.65 22.20 0.21 -1.90 16 15 C -0.12 -2.65 10.05 22.21 0.22 -2.43 16 16 C -0.12 -3.53 9.62 22.35 0.22 -3.32 16 17 C -0.11 -3.73 5.82 -19.82 -0.12 -3.85 16 18 C -0.05 -1.65 5.76 -19.85 -0.11 -1.76 16 19 C -0.09 -2.74 5.24 29.74 0.16 -2.58 16 20 C 0.14 5.33 6.51 86.17 0.56 5.90 16 21 N -0.62 -29.01 2.67 -704.23 -1.88 -30.89 16 22 C -0.25 -13.99 10.06 84.03 0.85 -13.15 16 23 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 24 C -0.02 -1.38 5.21 84.86 0.44 -0.94 16 25 N -0.95 -58.90 13.97 21.65 0.30 -58.60 16 26 Si 0.93 45.76 24.43 68.60 1.68 47.44 16 27 H -0.27 -12.64 6.95 99.48 0.69 -11.94 16 28 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 29 H -0.26 -12.36 6.42 99.48 0.64 -11.72 16 30 C 0.16 7.04 4.04 85.63 0.35 7.39 16 31 H 0.06 1.25 7.60 -2.39 -0.02 1.24 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.05 4.72 -2.39 -0.01 1.04 16 34 H 0.07 1.76 6.62 -2.39 -0.02 1.74 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.91 5.85 -2.38 -0.01 1.89 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.41 8.30 8.46 -92.71 -0.78 7.51 16 41 H 0.07 1.68 6.33 -2.38 -0.02 1.66 16 42 H 0.08 1.68 7.98 -2.39 -0.02 1.66 16 43 H 0.15 2.27 8.02 -2.91 -0.02 2.25 16 44 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.12 3.36 8.05 -2.91 -0.02 3.34 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.09 2.38 6.27 -2.39 -0.01 2.36 16 48 H 0.06 2.51 7.96 -2.39 -0.02 2.49 16 49 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 51 H 0.06 2.68 5.89 -2.39 -0.01 2.67 16 52 H 0.03 1.49 6.28 -2.39 -0.01 1.47 16 Total: -1.00 -69.00 396.65 2.40 -66.59 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.06 Total: 26.10 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.87 Total: -15.93 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.16 Total: -107.40 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.04 Total: -16.80 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.68 Total: 47.44 kcal Total: -69.00 2.40 -66.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.280 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds