Wall clock time and date at job start Wed Apr 1 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 C 1.53003 * 109.47369 * 119.99852 * 2 1 3 5 5 H 1.09000 * 115.56259 * 272.11229 * 4 2 1 6 6 C 1.52995 * 117.49968 * 126.41772 * 4 2 1 7 7 C 1.52999 * 60.00178 * 252.51348 * 6 4 2 8 8 H 1.08996 * 117.49620 * 252.49171 * 7 6 4 9 9 C 1.50704 * 117.49742 * 107.48726 * 7 6 4 10 10 O 1.21278 * 120.00269 * 333.76010 * 9 7 6 11 11 N 1.34776 * 119.99256 * 153.75344 * 9 7 6 12 12 C 1.46501 * 119.99386 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.46935 * 180.02562 * 12 11 9 14 14 C 1.37951 * 119.71130 * 259.96244 * 13 12 11 15 15 C 1.38220 * 119.82943 * 179.97438 * 14 13 12 16 16 C 1.38005 * 119.71493 * 0.19991 * 15 14 13 17 17 C 1.38800 * 120.50519 * 0.02562 * 16 15 14 18 18 C 1.37709 * 119.84875 * 359.61885 * 17 16 15 19 19 C 1.50598 * 122.86786 * 180.59330 * 18 17 16 20 20 C 1.52794 * 110.85940 * 340.25449 * 19 18 17 21 21 N 1.47241 * 107.89761 * 47.41567 * 20 19 18 22 22 C 1.36934 * 121.34613 * 115.66352 * 21 20 19 23 23 H 1.07995 * 120.00437 * 334.30702 * 22 21 20 24 24 C 1.38814 * 119.99925 * 154.58274 * 22 21 20 25 25 N 1.31620 * 119.99697 * 343.76602 * 24 22 21 26 26 Si 1.86795 * 120.00123 * 163.76674 * 24 22 21 27 27 H 1.48498 * 109.47412 * 59.99639 * 26 24 22 28 28 H 1.48500 * 109.47230 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46872 * 300.00015 * 26 24 22 30 30 C 1.46687 * 117.30479 * 295.93531 * 21 20 19 31 31 H 1.08999 * 109.47774 * 290.60198 * 1 2 3 32 32 H 1.08997 * 109.47227 * 50.60456 * 1 2 3 33 33 H 1.09008 * 109.47022 * 170.60271 * 1 2 3 34 34 H 1.09003 * 109.47303 * 240.00086 * 2 1 3 35 35 H 1.09005 * 109.47001 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47242 * 299.99535 * 3 2 1 37 37 H 1.08994 * 109.47065 * 59.99724 * 3 2 1 38 38 H 1.09001 * 117.50076 * 145.01831 * 6 4 2 39 39 H 1.09007 * 117.49726 * 0.02562 * 6 4 2 40 40 H 0.96998 * 120.00607 * 0.02562 * 11 9 7 41 41 H 1.08998 * 109.47151 * 60.00700 * 12 11 9 42 42 H 1.09000 * 109.47669 * 300.00717 * 12 11 9 43 43 H 1.08002 * 120.08450 * 359.96342 * 14 13 12 44 44 H 1.07999 * 120.14471 * 180.18297 * 15 14 13 45 45 H 1.08001 * 119.74637 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.20141 * 219.89555 * 19 18 17 47 47 H 1.09006 * 109.16122 * 100.58183 * 19 18 17 48 48 H 1.08997 * 109.77336 * 287.81872 * 20 19 18 49 49 H 1.09002 * 109.77324 * 167.01608 * 20 19 18 50 50 H 0.97004 * 119.99865 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.43998 * 164.14961 * 30 21 20 52 52 H 1.09006 * 109.43654 * 284.03003 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1626 -0.0980 2.1350 6 6 3.0351 -1.8657 1.0475 7 6 1.5936 -2.1693 1.4607 8 1 1.4226 -2.4990 2.4854 9 6 0.6852 -2.7760 0.4225 10 8 0.8962 -2.5818 -0.7559 11 7 -0.3616 -3.5345 0.8036 12 6 -1.2450 -4.1239 -0.2056 13 6 -2.3279 -4.9188 0.4774 14 6 -2.2169 -6.2911 0.5649 15 6 -3.2084 -7.0225 1.1913 16 6 -4.3054 -6.3743 1.7213 17 6 -4.4204 -4.9941 1.6297 18 6 -3.4299 -4.2632 1.0125 19 6 -3.4787 -2.7633 0.8867 20 6 -4.9063 -2.2486 1.0645 21 7 -5.4747 -2.8947 2.2593 22 6 -5.8246 -2.1662 3.3647 23 1 -5.3396 -1.2223 3.5651 24 6 -6.7985 -2.6436 4.2309 25 7 -7.6051 -3.6099 3.8459 26 14 -6.9645 -1.9148 5.9428 27 1 -7.2594 -0.4633 5.8364 28 1 -8.0706 -2.5936 6.6646 29 1 -5.6950 -2.1087 6.6885 30 6 -5.6454 -4.3511 2.2198 31 1 -0.3634 0.3616 0.9619 32 1 -0.3633 0.6522 -0.7941 33 1 -0.3633 -1.0140 -0.1678 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6765 1.9563 0.8899 38 1 3.8125 -1.9954 1.8004 39 1 3.3267 -2.1046 0.0247 40 1 -0.5306 -3.6896 1.7461 41 1 -0.6668 -4.7806 -0.8556 42 1 -1.6974 -3.3305 -0.8005 43 1 -1.3575 -6.7926 0.1450 44 1 -3.1253 -8.0968 1.2653 45 1 -5.0803 -6.9453 2.2112 46 1 -3.1135 -2.4741 -0.0987 47 1 -2.8399 -2.3192 1.6502 48 1 -5.5022 -2.5042 0.1883 49 1 -4.8942 -1.1672 1.2005 50 1 -8.2855 -3.9438 4.4514 51 1 -5.7996 -4.7259 3.2316 52 1 -6.5118 -4.5983 1.6061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:05 Heat of formation + Delta-G solvation = 22.602701 kcal Electronic energy + Delta-G solvation = -30595.204740 eV Core-core repulsion = 26753.220049 eV Total energy + Delta-G solvation = -3841.984691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.52639 -39.55493 -37.31396 -35.96723 -34.84204 -33.50127 -32.73667 -31.69036 -30.15239 -28.92309 -27.23586 -26.45558 -25.57254 -23.75803 -23.18167 -22.96163 -22.14389 -20.60716 -20.52291 -19.62505 -19.00525 -17.08286 -16.80515 -16.31372 -15.78277 -15.65618 -15.19689 -14.90932 -14.65012 -14.50085 -14.27327 -13.91815 -13.63677 -13.40691 -13.21865 -13.02756 -12.88170 -12.59466 -12.53480 -12.31406 -12.23303 -12.20139 -11.97253 -11.55059 -11.39713 -11.27249 -11.23276 -10.97316 -10.90853 -10.84113 -10.73982 -10.41822 -10.31961 -10.17771 -10.12759 -9.92969 -9.79339 -9.74378 -8.99604 -8.69975 -8.28616 -7.90743 -6.79860 -5.86991 -3.27244 1.59435 1.85040 2.43487 3.24679 3.34534 3.40480 3.41347 3.75499 4.18291 4.39879 4.43351 4.62434 4.68545 4.83017 4.93030 5.01979 5.13192 5.17955 5.24357 5.27110 5.29458 5.39930 5.45299 5.50082 5.51795 5.54444 5.62218 5.71659 5.79806 5.82103 5.84150 5.87170 5.91805 5.97351 6.09728 6.10995 6.12073 6.20354 6.31519 6.39638 6.45715 6.49507 6.53337 6.64256 6.81959 6.83024 6.92924 7.07548 7.17495 7.42418 7.52307 7.58247 7.72354 8.24620 8.31960 9.12135 9.74594 10.33415 11.23579 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003360 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.908368 B = 8331.920177 C =10079.266468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.109 4.109 5 H 0.111 0.889 6 C -0.145 4.145 7 C -0.194 4.194 8 H 0.118 0.882 9 C 0.548 3.452 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.167 3.833 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.046 4.046 19 C -0.098 4.098 20 C 0.142 3.858 21 N -0.592 5.592 22 C -0.251 4.251 23 H 0.068 0.932 24 C 0.003 3.997 25 N -0.907 5.907 26 Si 0.904 3.096 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.205 3.795 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.403 0.597 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.026 0.974 49 H 0.060 0.940 50 H 0.256 0.744 51 H 0.093 0.907 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.796 0.094 -5.785 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.201 4.201 4 C -0.128 4.128 5 H 0.129 0.871 6 C -0.183 4.183 7 C -0.215 4.215 8 H 0.136 0.864 9 C 0.335 3.665 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.044 3.956 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.078 4.078 18 C -0.046 4.046 19 C -0.137 4.137 20 C 0.015 3.985 21 N -0.314 5.314 22 C -0.380 4.380 23 H 0.086 0.914 24 C -0.195 4.195 25 N -0.551 5.551 26 Si 0.734 3.266 27 H -0.208 1.208 28 H -0.216 1.216 29 H -0.210 1.210 30 C 0.080 3.920 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.237 0.763 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.111 0.889 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 17.759 0.182 -6.531 18.923 hybrid contribution -0.345 -0.064 1.568 1.606 sum 17.414 0.118 -4.963 18.108 Atomic orbital electron populations 1.21974 0.94772 1.02868 1.01298 1.20739 0.96088 0.95292 0.96504 1.21827 1.00679 0.95879 1.01715 1.22450 1.01361 0.88549 1.00454 0.87084 1.23093 0.90193 1.01617 1.03382 1.22307 0.98055 1.01466 0.99711 0.86403 1.19456 0.80499 0.77554 0.88945 1.90675 1.72727 1.60486 1.18301 1.46052 1.28431 1.51624 1.10753 1.20141 0.89112 0.96343 0.89977 1.19801 0.96219 0.93806 1.02658 1.20755 0.98989 0.93189 1.00740 1.20933 0.94922 0.99205 0.99912 1.21196 0.97960 0.94335 0.99758 1.20941 0.97697 0.93398 0.95780 1.19449 0.92908 0.95834 0.96453 1.21033 1.00950 0.91328 1.00379 1.20914 0.90766 0.96586 0.90193 1.43952 1.73611 1.01553 1.12268 1.19102 1.15190 1.04240 0.99482 0.91411 1.25018 0.95518 0.99230 0.99762 1.70002 1.19570 1.30494 1.35035 0.86342 0.77236 0.78653 0.84401 1.20807 1.21559 1.21031 1.19649 0.88834 0.83300 1.00226 0.93055 0.92883 0.91615 0.89667 0.92850 0.92655 0.92808 0.88151 0.87703 0.76258 0.91330 0.90536 0.86891 0.86676 0.86266 0.91992 0.91198 0.95594 0.92116 0.93446 0.88866 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.63 37.15 0.32 -1.50 16 2 C -0.07 -0.72 2.31 -90.62 -0.21 -0.93 16 3 C -0.14 -1.26 9.15 37.16 0.34 -0.92 16 4 C -0.11 -1.04 5.17 -90.62 -0.47 -1.51 16 5 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 6 C -0.15 -1.29 9.70 -26.73 -0.26 -1.55 16 7 C -0.19 -1.96 6.09 -91.77 -0.56 -2.52 16 8 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 9 C 0.55 6.89 5.20 -10.98 -0.06 6.83 16 10 O -0.54 -8.23 13.29 5.56 0.07 -8.16 16 11 N -0.72 -8.76 5.53 -61.47 -0.34 -9.10 16 12 C 0.17 2.21 5.11 -5.19 -0.03 2.18 16 13 C -0.12 -1.83 5.26 -104.47 -0.55 -2.38 16 14 C -0.12 -1.63 9.65 -39.69 -0.38 -2.02 16 15 C -0.13 -1.89 10.05 -39.67 -0.40 -2.29 16 16 C -0.11 -1.92 9.62 -39.46 -0.38 -2.30 16 17 C -0.08 -1.48 5.81 -104.75 -0.61 -2.09 16 18 C -0.05 -0.80 5.76 -104.61 -0.60 -1.40 16 19 C -0.10 -1.69 5.24 -28.04 -0.15 -1.84 16 20 C 0.14 2.91 6.52 -3.74 -0.02 2.88 16 21 N -0.59 -14.45 2.97 -174.15 -0.52 -14.97 16 22 C -0.25 -6.70 9.68 -15.06 -0.15 -6.84 16 23 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 24 C 0.00 0.09 4.97 -17.43 -0.09 0.00 16 25 N -0.91 -25.53 11.21 55.49 0.62 -24.91 16 26 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 C 0.21 4.79 4.81 -5.23 -0.03 4.77 16 31 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.07 0.90 4.66 -51.92 -0.24 0.66 16 34 H 0.09 1.05 6.77 -51.93 -0.35 0.70 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.05 7.81 -51.93 -0.41 0.64 16 40 H 0.40 4.64 8.46 -40.82 -0.35 4.29 16 41 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 42 H 0.08 1.08 6.32 -51.93 -0.33 0.75 16 43 H 0.11 1.31 8.02 -52.49 -0.42 0.89 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.90 8.05 -52.49 -0.42 1.47 16 46 H 0.06 0.96 6.26 -51.93 -0.33 0.64 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 50 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.09 2.40 6.45 -51.93 -0.33 2.07 16 52 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -29.49 405.12 -11.98 -41.47 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -8.62 Total: 6.81 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -4.27 Total: -13.43 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.24 Total: -48.97 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.07 Total: -8.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.49 -11.98 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.074 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds