Wall clock time and date at job start Wed Apr 1 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46898 * 2 1 4 4 C 1.53003 * 109.47369 * 119.99852 * 2 1 3 5 5 H 1.09000 * 115.56259 * 272.11229 * 4 2 1 6 6 C 1.52995 * 117.49968 * 126.41772 * 4 2 1 7 7 C 1.52999 * 60.00178 * 252.51348 * 6 4 2 8 8 H 1.08996 * 117.49620 * 252.49171 * 7 6 4 9 9 C 1.50704 * 117.49742 * 107.48726 * 7 6 4 10 10 O 1.21278 * 120.00269 * 333.76010 * 9 7 6 11 11 N 1.34776 * 119.99256 * 153.75344 * 9 7 6 12 12 C 1.46501 * 119.99386 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.46935 * 180.02562 * 12 11 9 14 14 C 1.37951 * 119.71130 * 259.96244 * 13 12 11 15 15 C 1.38220 * 119.82943 * 179.97438 * 14 13 12 16 16 C 1.38005 * 119.71493 * 0.19991 * 15 14 13 17 17 C 1.38800 * 120.50519 * 0.02562 * 16 15 14 18 18 C 1.37709 * 119.84875 * 359.61885 * 17 16 15 19 19 C 1.50598 * 122.86786 * 180.59330 * 18 17 16 20 20 C 1.52794 * 110.85940 * 340.25449 * 19 18 17 21 21 N 1.47241 * 107.89761 * 47.41567 * 20 19 18 22 22 C 1.36934 * 121.34613 * 115.66352 * 21 20 19 23 23 H 1.07995 * 120.00437 * 334.30702 * 22 21 20 24 24 C 1.38814 * 119.99925 * 154.58274 * 22 21 20 25 25 N 1.31620 * 119.99697 * 343.76602 * 24 22 21 26 26 Si 1.86795 * 120.00123 * 163.76674 * 24 22 21 27 27 H 1.48498 * 109.47412 * 59.99639 * 26 24 22 28 28 H 1.48500 * 109.47230 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46872 * 300.00015 * 26 24 22 30 30 C 1.46687 * 117.30479 * 295.93531 * 21 20 19 31 31 H 1.08999 * 109.47774 * 290.60198 * 1 2 3 32 32 H 1.08997 * 109.47227 * 50.60456 * 1 2 3 33 33 H 1.09008 * 109.47022 * 170.60271 * 1 2 3 34 34 H 1.09003 * 109.47303 * 240.00086 * 2 1 3 35 35 H 1.09005 * 109.47001 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47242 * 299.99535 * 3 2 1 37 37 H 1.08994 * 109.47065 * 59.99724 * 3 2 1 38 38 H 1.09001 * 117.50076 * 145.01831 * 6 4 2 39 39 H 1.09007 * 117.49726 * 0.02562 * 6 4 2 40 40 H 0.96998 * 120.00607 * 0.02562 * 11 9 7 41 41 H 1.08998 * 109.47151 * 60.00700 * 12 11 9 42 42 H 1.09000 * 109.47669 * 300.00717 * 12 11 9 43 43 H 1.08002 * 120.08450 * 359.96342 * 14 13 12 44 44 H 1.07999 * 120.14471 * 180.18297 * 15 14 13 45 45 H 1.08001 * 119.74637 * 180.02562 * 16 15 14 46 46 H 1.08996 * 109.20141 * 219.89555 * 19 18 17 47 47 H 1.09006 * 109.16122 * 100.58183 * 19 18 17 48 48 H 1.08997 * 109.77336 * 287.81872 * 20 19 18 49 49 H 1.09002 * 109.77324 * 167.01608 * 20 19 18 50 50 H 0.97004 * 119.99865 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.43998 * 164.14961 * 30 21 20 52 52 H 1.09006 * 109.43654 * 284.03003 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1626 -0.0980 2.1350 6 6 3.0351 -1.8657 1.0475 7 6 1.5936 -2.1693 1.4607 8 1 1.4226 -2.4990 2.4854 9 6 0.6852 -2.7760 0.4225 10 8 0.8962 -2.5818 -0.7559 11 7 -0.3616 -3.5345 0.8036 12 6 -1.2450 -4.1239 -0.2056 13 6 -2.3279 -4.9188 0.4774 14 6 -2.2169 -6.2911 0.5649 15 6 -3.2084 -7.0225 1.1913 16 6 -4.3054 -6.3743 1.7213 17 6 -4.4204 -4.9941 1.6297 18 6 -3.4299 -4.2632 1.0125 19 6 -3.4787 -2.7633 0.8867 20 6 -4.9063 -2.2486 1.0645 21 7 -5.4747 -2.8947 2.2593 22 6 -5.8246 -2.1662 3.3647 23 1 -5.3396 -1.2223 3.5651 24 6 -6.7985 -2.6436 4.2309 25 7 -7.6051 -3.6099 3.8459 26 14 -6.9645 -1.9148 5.9428 27 1 -7.2594 -0.4633 5.8364 28 1 -8.0706 -2.5936 6.6646 29 1 -5.6950 -2.1087 6.6885 30 6 -5.6454 -4.3511 2.2198 31 1 -0.3634 0.3616 0.9619 32 1 -0.3633 0.6522 -0.7941 33 1 -0.3633 -1.0140 -0.1678 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6765 1.9563 0.8899 38 1 3.8125 -1.9954 1.8004 39 1 3.3267 -2.1046 0.0247 40 1 -0.5306 -3.6896 1.7461 41 1 -0.6668 -4.7806 -0.8556 42 1 -1.6974 -3.3305 -0.8005 43 1 -1.3575 -6.7926 0.1450 44 1 -3.1253 -8.0968 1.2653 45 1 -5.0803 -6.9453 2.2112 46 1 -3.1135 -2.4741 -0.0987 47 1 -2.8399 -2.3192 1.6502 48 1 -5.5022 -2.5042 0.1883 49 1 -4.8942 -1.1672 1.2005 50 1 -8.2855 -3.9438 4.4514 51 1 -5.7996 -4.7259 3.2316 52 1 -6.5118 -4.5983 1.6061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051306305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:04 Heat of formation + Delta-G solvation = 8.047245 kcal Electronic energy + Delta-G solvation = -30595.835912 eV Core-core repulsion = 26753.220049 eV Total energy + Delta-G solvation = -3842.615863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52081 -40.80754 -38.24949 -37.57275 -35.96230 -34.47916 -34.27475 -33.07740 -31.78474 -30.41500 -28.10491 -27.58189 -27.35867 -24.85173 -24.62211 -23.77686 -23.71386 -21.74316 -21.45234 -20.68234 -20.47164 -18.64639 -17.99201 -17.47062 -16.91270 -16.84550 -16.52403 -16.34774 -15.94166 -15.65566 -15.44164 -15.40688 -14.84375 -14.69163 -14.52652 -14.13208 -14.11583 -14.01948 -13.79863 -13.41144 -13.30365 -13.21557 -13.04963 -13.01166 -12.81678 -12.72147 -12.53439 -12.39191 -12.20692 -12.13008 -12.05336 -11.86636 -11.70260 -11.62129 -11.34304 -11.09606 -10.90523 -10.76199 -10.66240 -10.01705 -9.55413 -9.33271 -8.77328 -7.91836 -5.35277 0.34802 0.55490 1.46224 1.48403 1.52951 1.55190 2.26696 2.48874 2.93440 2.98562 3.25251 3.60341 3.62512 3.69844 3.85856 3.93158 3.94358 4.02479 4.07961 4.15221 4.24917 4.33594 4.38429 4.42637 4.49457 4.54778 4.61110 4.71058 4.73321 4.76298 4.81241 4.82093 4.91529 4.94859 4.98469 5.04830 5.08629 5.11301 5.14232 5.16516 5.22898 5.32227 5.35944 5.38935 5.42905 5.50050 5.58358 5.60625 5.63208 5.69581 5.93734 6.15860 6.30885 6.58905 7.09272 7.29571 7.77849 8.33998 9.16990 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003360 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.908368 B = 8331.920177 C =10079.266468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.111 4.111 5 H 0.130 0.870 6 C -0.134 4.134 7 C -0.204 4.204 8 H 0.137 0.863 9 C 0.546 3.454 10 O -0.573 6.573 11 N -0.714 5.714 12 C 0.174 3.826 13 C -0.114 4.114 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.107 4.107 18 C -0.058 4.058 19 C -0.082 4.082 20 C 0.138 3.862 21 N -0.609 5.609 22 C -0.263 4.263 23 H 0.071 0.929 24 C -0.049 4.049 25 N -0.938 5.938 26 Si 0.968 3.032 27 H -0.274 1.274 28 H -0.294 1.294 29 H -0.278 1.278 30 C 0.222 3.778 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.408 0.592 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.062 0.938 50 H 0.251 0.749 51 H 0.059 0.941 52 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.958 -0.203 -5.419 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.197 4.197 4 C -0.129 4.129 5 H 0.148 0.852 6 C -0.171 4.171 7 C -0.225 4.225 8 H 0.155 0.845 9 C 0.335 3.665 10 O -0.453 6.453 11 N -0.365 5.365 12 C 0.051 3.949 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.059 4.059 19 C -0.120 4.120 20 C 0.012 3.988 21 N -0.332 5.332 22 C -0.392 4.392 23 H 0.088 0.912 24 C -0.244 4.244 25 N -0.583 5.583 26 Si 0.796 3.204 27 H -0.200 1.200 28 H -0.220 1.220 29 H -0.204 1.204 30 C 0.097 3.903 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.243 0.757 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.136 0.864 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.080 0.920 50 H 0.060 0.940 51 H 0.077 0.923 52 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 20.942 -0.107 -6.174 21.834 hybrid contribution -1.299 0.003 1.340 1.866 sum 19.644 -0.104 -4.834 20.230 Atomic orbital electron populations 1.21949 0.96026 1.01572 1.01200 1.20679 0.94970 0.96455 0.96409 1.21790 1.01373 0.94566 1.01962 1.22532 1.01496 0.88461 1.00452 0.85240 1.23147 0.90107 1.00437 1.03390 1.22387 0.98366 1.01886 0.99816 0.84529 1.19875 0.80487 0.77031 0.89064 1.90666 1.73482 1.61453 1.19728 1.45997 1.28182 1.51533 1.10767 1.20024 0.88842 0.96048 0.90011 1.19854 0.95408 0.94512 1.01694 1.21173 0.99483 0.92652 0.98998 1.21268 0.93415 1.00920 0.98208 1.21285 0.99254 0.93361 1.00335 1.20583 0.97222 0.94670 0.98374 1.19458 0.93596 0.95705 0.97126 1.20820 0.98278 0.91582 1.01366 1.21058 0.92515 0.96625 0.88589 1.44201 1.73847 1.02148 1.13040 1.19447 1.14917 1.04486 1.00393 0.91172 1.25785 0.95455 0.99973 1.03176 1.70173 1.20237 1.31984 1.35955 0.85328 0.77021 0.78052 0.79991 1.19998 1.21962 1.20363 1.19204 0.90028 0.83170 0.97944 0.92894 0.93187 0.93435 0.91757 0.91706 0.92866 0.92128 0.85515 0.89112 0.75695 0.90291 0.91559 0.83433 0.83234 0.86391 0.90067 0.91273 0.96177 0.91976 0.93985 0.92320 0.97774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.63 71.98 0.62 -2.89 16 2 C -0.07 -1.33 2.31 -10.79 -0.02 -1.36 16 3 C -0.14 -2.21 9.15 71.98 0.66 -1.55 16 4 C -0.11 -1.84 5.17 -10.79 -0.06 -1.89 16 5 H 0.13 1.69 8.10 -2.39 -0.02 1.67 16 6 C -0.13 -2.02 9.70 30.59 0.30 -1.72 16 7 C -0.20 -3.61 6.09 -11.54 -0.07 -3.68 16 8 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 9 C 0.55 12.84 5.20 87.66 0.46 13.30 16 10 O -0.57 -16.84 13.29 -3.02 -0.04 -16.88 16 11 N -0.71 -15.97 5.53 -466.78 -2.58 -18.56 16 12 C 0.17 4.21 5.11 85.63 0.44 4.65 16 13 C -0.11 -3.11 5.26 -19.76 -0.10 -3.21 16 14 C -0.10 -2.50 9.65 22.20 0.21 -2.29 16 15 C -0.12 -3.08 10.05 22.21 0.22 -2.86 16 16 C -0.12 -4.13 9.62 22.35 0.21 -3.91 16 17 C -0.11 -4.24 5.81 -19.95 -0.12 -4.36 16 18 C -0.06 -2.01 5.76 -19.85 -0.11 -2.12 16 19 C -0.08 -2.82 5.24 29.75 0.16 -2.66 16 20 C 0.14 5.80 6.52 86.17 0.56 6.36 16 21 N -0.61 -31.03 2.97 -704.90 -2.09 -33.12 16 22 C -0.26 -14.45 9.68 84.03 0.81 -13.63 16 23 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 24 C -0.05 -2.70 4.97 84.86 0.42 -2.28 16 25 N -0.94 -55.26 11.21 21.65 0.24 -55.01 16 26 Si 0.97 44.48 29.58 68.60 2.03 46.51 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 29 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 30 C 0.22 11.01 4.81 85.51 0.41 11.42 16 31 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 32 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.05 1.28 4.66 -2.38 -0.01 1.27 16 34 H 0.06 1.56 6.77 -2.39 -0.02 1.55 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.67 7.81 -2.38 -0.02 1.65 16 40 H 0.41 8.45 8.46 -92.71 -0.78 7.66 16 41 H 0.08 1.79 7.99 -2.39 -0.02 1.78 16 42 H 0.07 1.77 6.32 -2.39 -0.02 1.76 16 43 H 0.15 2.61 8.02 -2.91 -0.02 2.59 16 44 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 45 H 0.12 3.85 8.05 -2.91 -0.02 3.83 16 46 H 0.08 2.46 6.26 -2.39 -0.01 2.45 16 47 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.06 2.53 7.96 -2.39 -0.02 2.51 16 50 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 51 H 0.06 3.24 6.45 -2.39 -0.02 3.23 16 52 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 Total: -1.00 -66.97 405.12 2.69 -64.29 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.13 Total: 27.48 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 5.00 Total: -14.70 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -4.43 Total: -106.70 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.04 Total: -16.88 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -66.97 2.69 -64.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.335 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds