Wall clock time and date at job start Wed Apr 1 2020 01:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47130 * 2 1 4 4 C 1.52997 * 109.46814 * 119.99825 * 2 1 3 5 5 H 1.08999 * 115.56346 * 274.31209 * 4 2 1 6 6 C 1.53079 * 117.49348 * 128.60163 * 4 2 1 7 7 C 1.53000 * 59.98393 * 252.51180 * 6 4 2 8 8 H 1.09003 * 117.49593 * 107.50093 * 7 6 4 9 9 C 1.50692 * 117.49976 * 252.49444 * 7 6 4 10 10 O 1.21290 * 120.00032 * 68.74998 * 9 7 6 11 11 N 1.34777 * 120.00659 * 249.02285 * 9 7 6 12 12 C 1.46493 * 120.00631 * 179.72256 * 11 9 7 13 13 C 1.50696 * 109.47214 * 180.02562 * 12 11 9 14 14 C 1.37955 * 119.70930 * 260.00127 * 13 12 11 15 15 C 1.38228 * 119.82738 * 180.02562 * 14 13 12 16 16 C 1.38008 * 119.71587 * 0.26439 * 15 14 13 17 17 C 1.38785 * 120.50271 * 359.83876 * 16 15 14 18 18 C 1.37721 * 119.85262 * 359.43953 * 17 16 15 19 19 C 1.50591 * 122.85092 * 181.01781 * 18 17 16 20 20 C 1.52786 * 110.92391 * 340.16313 * 19 18 17 21 21 N 1.47224 * 107.91264 * 47.31727 * 20 19 18 22 22 C 1.36939 * 121.32793 * 115.82146 * 21 20 19 23 23 H 1.07994 * 120.00078 * 335.38456 * 22 21 20 24 24 C 1.38812 * 119.99620 * 155.38264 * 22 21 20 25 25 N 1.31616 * 120.00684 * 344.26954 * 24 22 21 26 26 Si 1.86813 * 119.99534 * 164.27335 * 24 22 21 27 27 H 1.48491 * 109.47140 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46620 * 119.99845 * 26 24 22 29 29 H 1.48499 * 109.47011 * 239.99627 * 26 24 22 30 30 C 1.46686 * 117.34655 * 295.80260 * 21 20 19 31 31 H 1.08990 * 109.47261 * 300.00371 * 1 2 3 32 32 H 1.09006 * 109.46570 * 60.00220 * 1 2 3 33 33 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46966 * 240.00149 * 2 1 3 35 35 H 1.08999 * 109.47125 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46857 * 300.00008 * 3 2 1 37 37 H 1.09006 * 109.46944 * 59.99806 * 3 2 1 38 38 H 1.09000 * 117.51483 * 145.03339 * 6 4 2 39 39 H 1.08999 * 117.49038 * 0.02562 * 6 4 2 40 40 H 0.97005 * 119.99470 * 359.72829 * 11 9 7 41 41 H 1.09000 * 109.47259 * 300.00325 * 12 11 9 42 42 H 1.09009 * 109.47003 * 60.00351 * 12 11 9 43 43 H 1.08001 * 120.08900 * 0.10148 * 14 13 12 44 44 H 1.07995 * 120.13936 * 180.28782 * 15 14 13 45 45 H 1.08000 * 119.74502 * 179.81824 * 16 15 14 46 46 H 1.08996 * 109.34102 * 219.67213 * 19 18 17 47 47 H 1.08997 * 108.94816 * 100.39837 * 19 18 17 48 48 H 1.09003 * 109.77379 * 287.71864 * 20 19 18 49 49 H 1.08997 * 109.82003 * 166.94901 * 20 19 18 50 50 H 0.96995 * 120.00281 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.43225 * 284.32671 * 30 21 20 52 52 H 1.08994 * 109.39981 * 164.43471 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1270 -0.1061 2.1449 6 6 3.0742 -1.8322 1.0512 7 6 1.6357 -2.1852 1.4344 8 1 1.0061 -2.6344 0.6663 9 6 1.3883 -2.6663 2.8408 10 8 1.5104 -1.9010 3.7739 11 7 1.0368 -3.9484 3.0626 12 6 0.8023 -4.4177 4.4304 13 6 0.4259 -5.8766 4.4033 14 6 -0.9004 -6.2426 4.5045 15 6 -1.2483 -7.5801 4.4805 16 6 -0.2647 -8.5408 4.3609 17 6 1.0700 -8.1738 4.2612 18 6 1.4171 -6.8411 4.2699 19 6 2.8407 -6.3668 4.1433 20 6 3.8214 -7.4840 4.4961 21 7 3.3963 -8.7010 3.7849 22 6 4.1840 -9.2756 2.8233 23 1 4.9075 -8.6773 2.2895 24 6 4.0526 -10.6270 2.5349 25 7 3.4144 -11.4193 3.3700 26 14 4.7817 -11.3213 0.9613 27 1 5.4428 -10.2318 0.1992 28 1 5.7806 -12.3672 1.2981 29 1 3.7006 -11.9169 0.1356 30 6 2.0955 -9.2737 4.1476 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.8418 -1.9479 1.8164 39 1 3.3912 -2.0485 0.0310 40 1 0.9392 -4.5605 2.3164 41 1 1.7100 -4.2878 5.0197 42 1 -0.0074 -3.8414 4.8784 43 1 -1.6650 -5.4859 4.6010 44 1 -2.2854 -7.8721 4.5547 45 1 -0.5358 -9.5861 4.3450 46 1 3.0013 -5.5235 4.8149 47 1 3.0169 -6.0460 3.1167 48 1 3.8070 -7.6615 5.5715 49 1 4.8273 -7.2057 4.1818 50 1 3.3222 -12.3635 3.1682 51 1 2.1807 -9.7904 5.1037 52 1 1.7847 -9.9815 3.3792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:09 Heat of formation + Delta-G solvation = 15.408615 kcal Electronic energy + Delta-G solvation = -29816.269970 eV Core-core repulsion = 25973.973320 eV Total energy + Delta-G solvation = -3842.296650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.28473 -39.48361 -37.68395 -35.99750 -34.90437 -33.55326 -32.74898 -31.66593 -30.15326 -28.89915 -27.46698 -26.48654 -25.58030 -23.87856 -23.18273 -23.03701 -22.14255 -20.52588 -20.37202 -19.80940 -19.02722 -17.41753 -16.81098 -16.21481 -15.82595 -15.48740 -15.16818 -14.87676 -14.87065 -14.46749 -14.29250 -14.09342 -13.62045 -13.39791 -13.31878 -13.00855 -12.90145 -12.67442 -12.59212 -12.56473 -12.46055 -12.30167 -11.97083 -11.57788 -11.54375 -11.40952 -11.28179 -10.98678 -10.94554 -10.88247 -10.76434 -10.46278 -10.37350 -10.27922 -10.17296 -9.93429 -9.87661 -9.75199 -9.02358 -8.71913 -8.28528 -7.90495 -6.81817 -5.87222 -3.26920 1.59568 1.85277 2.47563 3.19999 3.32896 3.40912 3.42768 3.66112 4.17190 4.38020 4.42838 4.52814 4.60224 4.76934 4.85450 4.99979 5.02642 5.07807 5.13503 5.24401 5.29594 5.32915 5.38448 5.39778 5.49929 5.51364 5.53188 5.58075 5.61605 5.70580 5.78581 5.81663 5.82120 5.90143 5.97283 6.00674 6.09584 6.12219 6.17131 6.20297 6.41422 6.46440 6.53077 6.63477 6.81551 6.83140 6.92872 7.08644 7.18485 7.42672 7.51818 7.58853 7.72253 8.22343 8.31028 9.11892 9.74270 10.32281 11.23271 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.002796 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.544492 B =10011.644619 C =11552.733411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.113 4.113 5 H 0.117 0.883 6 C -0.147 4.147 7 C -0.189 4.189 8 H 0.122 0.878 9 C 0.543 3.457 10 O -0.547 6.547 11 N -0.716 5.716 12 C 0.166 3.834 13 C -0.125 4.125 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.046 4.046 19 C -0.099 4.099 20 C 0.142 3.858 21 N -0.593 5.593 22 C -0.247 4.247 23 H 0.070 0.930 24 C 0.000 4.000 25 N -0.908 5.908 26 Si 0.904 3.096 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.205 3.795 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.404 0.596 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.026 0.974 49 H 0.060 0.940 50 H 0.254 0.746 51 H 0.041 0.959 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 18.375 -4.161 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.202 4.202 4 C -0.132 4.132 5 H 0.135 0.865 6 C -0.184 4.184 7 C -0.210 4.210 8 H 0.140 0.860 9 C 0.329 3.671 10 O -0.425 6.425 11 N -0.366 5.366 12 C 0.043 3.957 13 C -0.125 4.125 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.046 4.046 19 C -0.137 4.137 20 C 0.015 3.985 21 N -0.315 5.315 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.198 4.198 25 N -0.553 5.553 26 Si 0.734 3.266 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 C 0.079 3.921 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.238 0.762 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.462 18.730 -3.502 20.463 hybrid contribution 0.045 -1.019 -1.085 1.489 sum -7.417 17.710 -4.587 19.741 Atomic orbital electron populations 1.21824 0.94868 1.01941 1.01742 1.20747 0.95834 0.96149 0.95843 1.21800 1.01194 0.95359 1.01804 1.22475 1.01267 0.89225 1.00203 0.86519 1.23106 0.90528 1.01690 1.03087 1.22255 1.01582 1.01211 0.95925 0.86035 1.19655 0.76022 0.81713 0.89696 1.90681 1.52055 1.55036 1.44752 1.46031 1.70103 1.10910 1.09595 1.20152 1.01417 0.90710 0.83382 1.19797 0.93654 0.93815 1.05234 1.20757 0.94896 0.96046 1.01977 1.20938 0.98847 0.93006 1.02202 1.21194 0.92544 0.99497 0.99959 1.21040 0.95693 0.95686 0.95475 1.19445 0.95035 0.92153 0.97998 1.21030 0.92296 0.99096 1.01316 1.20911 0.95541 0.87090 0.94954 1.44005 1.16424 1.27950 1.43133 1.19208 1.16629 0.91119 1.10696 0.91233 1.25014 1.00309 0.95767 0.98685 1.70006 1.46497 1.04140 1.34641 0.86187 0.78393 0.78844 0.83170 1.20244 1.21665 1.21542 1.19771 0.81944 0.90069 1.00268 0.92464 0.92707 0.92624 0.91001 0.92457 0.92630 0.92489 0.88163 0.87772 0.76168 0.90522 0.91306 0.86885 0.86666 0.86249 0.91970 0.91200 0.95584 0.92111 0.93545 0.94145 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.03 37.16 0.34 -0.75 16 2 C -0.07 -0.51 3.07 -90.62 -0.28 -0.79 16 3 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 4 C -0.11 -1.06 4.67 -90.58 -0.42 -1.49 16 5 H 0.12 1.29 7.64 -51.93 -0.40 0.90 16 6 C -0.15 -1.36 9.88 -26.69 -0.26 -1.62 16 7 C -0.19 -1.91 5.39 -91.77 -0.49 -2.41 16 8 H 0.12 1.04 7.61 -51.93 -0.39 0.64 16 9 C 0.54 7.14 7.61 -10.99 -0.08 7.06 16 10 O -0.55 -9.04 16.26 5.55 0.09 -8.95 16 11 N -0.72 -8.96 5.52 -61.48 -0.34 -9.30 16 12 C 0.17 2.25 5.10 -5.20 -0.03 2.22 16 13 C -0.12 -1.86 5.26 -104.47 -0.55 -2.41 16 14 C -0.12 -1.65 9.65 -39.69 -0.38 -2.03 16 15 C -0.13 -1.90 10.05 -39.67 -0.40 -2.30 16 16 C -0.11 -1.92 9.62 -39.46 -0.38 -2.30 16 17 C -0.08 -1.51 5.82 -104.55 -0.61 -2.12 16 18 C -0.05 -0.80 5.76 -104.61 -0.60 -1.41 16 19 C -0.10 -1.71 5.24 -28.05 -0.15 -1.86 16 20 C 0.14 2.90 6.52 -3.76 -0.02 2.88 16 21 N -0.59 -14.49 2.97 -173.94 -0.52 -15.01 16 22 C -0.25 -6.59 9.69 -15.06 -0.15 -6.74 16 23 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 24 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 25 N -0.91 -25.56 11.10 55.49 0.62 -24.94 16 26 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 C 0.20 4.79 4.85 -5.04 -0.02 4.77 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.42 7.29 -51.93 -0.38 0.04 16 34 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.40 4.69 8.46 -40.82 -0.35 4.35 16 41 H 0.08 1.11 6.34 -51.93 -0.33 0.78 16 42 H 0.07 0.91 7.99 -51.92 -0.41 0.49 16 43 H 0.11 1.32 8.03 -52.49 -0.42 0.90 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.12 1.91 8.05 -52.49 -0.42 1.49 16 46 H 0.06 0.98 6.25 -51.93 -0.32 0.65 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 50 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 51 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.10 2.50 6.34 -51.93 -0.33 2.17 16 LS Contribution 413.58 15.07 6.23 6.23 Total: -1.00 -30.12 413.58 -11.97 -42.09 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.78 Total: 5.70 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.24 Total: -11.99 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.24 Total: -49.25 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.12 -11.97 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.497 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds