Wall clock time and date at job start Wed Apr 1 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47130 * 2 1 4 4 C 1.52997 * 109.46814 * 119.99825 * 2 1 3 5 5 H 1.08999 * 115.56346 * 274.31209 * 4 2 1 6 6 C 1.53079 * 117.49348 * 128.60163 * 4 2 1 7 7 C 1.53000 * 59.98393 * 252.51180 * 6 4 2 8 8 H 1.09003 * 117.49593 * 107.50093 * 7 6 4 9 9 C 1.50692 * 117.49976 * 252.49444 * 7 6 4 10 10 O 1.21290 * 120.00032 * 68.74998 * 9 7 6 11 11 N 1.34777 * 120.00659 * 249.02285 * 9 7 6 12 12 C 1.46493 * 120.00631 * 179.72256 * 11 9 7 13 13 C 1.50696 * 109.47214 * 180.02562 * 12 11 9 14 14 C 1.37955 * 119.70930 * 260.00127 * 13 12 11 15 15 C 1.38228 * 119.82738 * 180.02562 * 14 13 12 16 16 C 1.38008 * 119.71587 * 0.26439 * 15 14 13 17 17 C 1.38785 * 120.50271 * 359.83876 * 16 15 14 18 18 C 1.37721 * 119.85262 * 359.43953 * 17 16 15 19 19 C 1.50591 * 122.85092 * 181.01781 * 18 17 16 20 20 C 1.52786 * 110.92391 * 340.16313 * 19 18 17 21 21 N 1.47224 * 107.91264 * 47.31727 * 20 19 18 22 22 C 1.36939 * 121.32793 * 115.82146 * 21 20 19 23 23 H 1.07994 * 120.00078 * 335.38456 * 22 21 20 24 24 C 1.38812 * 119.99620 * 155.38264 * 22 21 20 25 25 N 1.31616 * 120.00684 * 344.26954 * 24 22 21 26 26 Si 1.86813 * 119.99534 * 164.27335 * 24 22 21 27 27 H 1.48491 * 109.47140 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46620 * 119.99845 * 26 24 22 29 29 H 1.48499 * 109.47011 * 239.99627 * 26 24 22 30 30 C 1.46686 * 117.34655 * 295.80260 * 21 20 19 31 31 H 1.08990 * 109.47261 * 300.00371 * 1 2 3 32 32 H 1.09006 * 109.46570 * 60.00220 * 1 2 3 33 33 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46966 * 240.00149 * 2 1 3 35 35 H 1.08999 * 109.47125 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46857 * 300.00008 * 3 2 1 37 37 H 1.09006 * 109.46944 * 59.99806 * 3 2 1 38 38 H 1.09000 * 117.51483 * 145.03339 * 6 4 2 39 39 H 1.08999 * 117.49038 * 0.02562 * 6 4 2 40 40 H 0.97005 * 119.99470 * 359.72829 * 11 9 7 41 41 H 1.09000 * 109.47259 * 300.00325 * 12 11 9 42 42 H 1.09009 * 109.47003 * 60.00351 * 12 11 9 43 43 H 1.08001 * 120.08900 * 0.10148 * 14 13 12 44 44 H 1.07995 * 120.13936 * 180.28782 * 15 14 13 45 45 H 1.08000 * 119.74502 * 179.81824 * 16 15 14 46 46 H 1.08996 * 109.34102 * 219.67213 * 19 18 17 47 47 H 1.08997 * 108.94816 * 100.39837 * 19 18 17 48 48 H 1.09003 * 109.77379 * 287.71864 * 20 19 18 49 49 H 1.08997 * 109.82003 * 166.94901 * 20 19 18 50 50 H 0.96995 * 120.00281 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.43225 * 284.32671 * 30 21 20 52 52 H 1.08994 * 109.39981 * 164.43471 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1270 -0.1061 2.1449 6 6 3.0742 -1.8322 1.0512 7 6 1.6357 -2.1852 1.4344 8 1 1.0061 -2.6344 0.6663 9 6 1.3883 -2.6663 2.8408 10 8 1.5104 -1.9010 3.7739 11 7 1.0368 -3.9484 3.0626 12 6 0.8023 -4.4177 4.4304 13 6 0.4259 -5.8766 4.4033 14 6 -0.9004 -6.2426 4.5045 15 6 -1.2483 -7.5801 4.4805 16 6 -0.2647 -8.5408 4.3609 17 6 1.0700 -8.1738 4.2612 18 6 1.4171 -6.8411 4.2699 19 6 2.8407 -6.3668 4.1433 20 6 3.8214 -7.4840 4.4961 21 7 3.3963 -8.7010 3.7849 22 6 4.1840 -9.2756 2.8233 23 1 4.9075 -8.6773 2.2895 24 6 4.0526 -10.6270 2.5349 25 7 3.4144 -11.4193 3.3700 26 14 4.7817 -11.3213 0.9613 27 1 5.4428 -10.2318 0.1992 28 1 5.7806 -12.3672 1.2981 29 1 3.7006 -11.9169 0.1356 30 6 2.0955 -9.2737 4.1476 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.8418 -1.9479 1.8164 39 1 3.3912 -2.0485 0.0310 40 1 0.9392 -4.5605 2.3164 41 1 1.7100 -4.2878 5.0197 42 1 -0.0074 -3.8414 4.8784 43 1 -1.6650 -5.4859 4.6010 44 1 -2.2854 -7.8721 4.5547 45 1 -0.5358 -9.5861 4.3450 46 1 3.0013 -5.5235 4.8149 47 1 3.0169 -6.0460 3.1167 48 1 3.8070 -7.6615 5.5715 49 1 4.8273 -7.2057 4.1818 50 1 3.3222 -12.3635 3.1682 51 1 2.1807 -9.7904 5.1037 52 1 1.7847 -9.9815 3.3792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051306306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:08 Heat of formation + Delta-G solvation = 0.544212 kcal Electronic energy + Delta-G solvation = -29816.914539 eV Core-core repulsion = 25973.973320 eV Total energy + Delta-G solvation = -3842.941219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.37860 -40.68866 -38.53814 -37.63473 -36.06825 -34.47370 -34.21304 -33.06733 -31.78513 -30.40038 -28.03635 -27.63177 -27.37517 -24.88537 -24.70638 -23.78198 -23.73111 -21.76051 -21.27028 -20.64015 -20.55084 -18.65496 -18.37649 -17.39054 -17.05928 -16.72908 -16.52523 -16.12301 -15.89055 -15.69977 -15.58061 -15.38229 -14.91398 -14.75772 -14.47582 -14.14093 -14.02515 -13.94878 -13.71944 -13.50516 -13.39297 -13.34697 -13.25137 -12.98976 -12.82726 -12.77367 -12.53385 -12.39037 -12.16685 -12.13840 -12.03639 -11.85410 -11.62949 -11.54986 -11.34881 -11.21810 -11.05023 -10.85538 -10.69127 -10.09340 -9.56280 -9.33371 -8.78983 -7.91590 -5.34441 0.34133 0.55337 1.45625 1.47289 1.49582 1.57846 2.20118 2.48749 2.86148 2.94111 3.25616 3.60136 3.61837 3.70155 3.79842 3.85957 3.92542 4.01509 4.11886 4.14662 4.20061 4.33032 4.37490 4.40912 4.46531 4.54430 4.60712 4.69253 4.72907 4.75877 4.81459 4.86149 4.88047 4.96478 4.98913 5.05116 5.08084 5.11235 5.13775 5.16598 5.23728 5.29508 5.36499 5.39558 5.44151 5.45572 5.55492 5.58388 5.62796 5.69322 5.93934 6.15439 6.30777 6.53290 7.09355 7.21552 7.77948 8.33278 9.17412 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.002796 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.544492 B =10011.644619 C =11552.733411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.110 4.110 5 H 0.095 0.905 6 C -0.142 4.142 7 C -0.192 4.192 8 H 0.143 0.857 9 C 0.541 3.459 10 O -0.585 6.585 11 N -0.709 5.709 12 C 0.171 3.829 13 C -0.115 4.115 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.058 4.058 19 C -0.084 4.084 20 C 0.137 3.863 21 N -0.611 5.611 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.939 5.939 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.290 1.290 30 C 0.221 3.779 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.410 0.590 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.118 0.882 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.021 0.979 49 H 0.063 0.937 50 H 0.251 0.749 51 H 0.005 0.995 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 20.496 -5.776 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C -0.201 4.201 4 C -0.129 4.129 5 H 0.113 0.887 6 C -0.179 4.179 7 C -0.213 4.213 8 H 0.161 0.839 9 C 0.329 3.671 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.048 3.952 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.109 4.109 18 C -0.058 4.058 19 C -0.122 4.122 20 C 0.011 3.989 21 N -0.334 5.334 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.247 4.247 25 N -0.586 5.586 26 Si 0.797 3.203 27 H -0.189 1.189 28 H -0.220 1.220 29 H -0.217 1.217 30 C 0.096 3.904 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.246 0.754 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.136 0.864 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.039 0.961 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.023 0.977 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.960 20.869 -5.123 23.282 hybrid contribution 0.476 -1.615 -0.495 1.755 sum -8.484 19.254 -5.619 21.778 Atomic orbital electron populations 1.21825 0.94721 1.01952 1.01846 1.20760 0.95901 0.96364 0.95154 1.21800 1.01263 0.95005 1.02065 1.22457 1.01307 0.88812 1.00297 0.88667 1.23177 0.89737 1.01217 1.03802 1.22296 1.02627 1.01844 0.94526 0.83946 1.20135 0.75057 0.81371 0.90528 1.90666 1.53741 1.55965 1.46197 1.45974 1.69677 1.10916 1.09404 1.20062 1.01390 0.89794 0.83927 1.19832 0.93614 0.93804 1.04264 1.21176 0.95066 0.96647 0.99384 1.21273 0.99787 0.92567 1.00200 1.21284 0.92155 1.00411 1.00287 1.20684 0.95699 0.95332 0.99218 1.19453 0.95650 0.91914 0.98811 1.20838 0.91617 0.98108 1.01685 1.21061 0.96732 0.86770 0.94294 1.44257 1.16863 1.28871 1.43372 1.19532 1.16613 0.91443 1.11114 0.91011 1.25786 1.01290 0.96148 1.01522 1.70175 1.48068 1.04047 1.36284 0.85175 0.77401 0.78088 0.79619 1.18907 1.21964 1.21651 1.19325 0.82939 0.90962 0.97210 0.93504 0.91480 0.92650 0.89788 0.92385 0.91445 0.93170 0.89447 0.85658 0.75413 0.91461 0.90233 0.83418 0.83208 0.86377 0.90004 0.91181 0.96129 0.91865 0.94015 0.97748 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.03 71.98 0.65 -1.21 16 2 C -0.06 -0.82 3.07 -10.79 -0.03 -0.85 16 3 C -0.14 -1.70 9.18 71.98 0.66 -1.04 16 4 C -0.11 -1.91 4.67 -10.77 -0.05 -1.96 16 5 H 0.10 2.10 7.64 -2.39 -0.02 2.08 16 6 C -0.14 -2.37 9.88 30.62 0.30 -2.07 16 7 C -0.19 -3.51 5.39 -11.54 -0.06 -3.57 16 8 H 0.14 2.00 7.61 -2.39 -0.02 1.98 16 9 C 0.54 13.37 7.61 87.65 0.67 14.04 16 10 O -0.58 -18.85 16.26 -3.06 -0.05 -18.90 16 11 N -0.71 -16.16 5.52 -466.80 -2.58 -18.73 16 12 C 0.17 4.22 5.10 85.63 0.44 4.65 16 13 C -0.11 -3.13 5.26 -19.76 -0.10 -3.23 16 14 C -0.10 -2.49 9.65 22.20 0.21 -2.28 16 15 C -0.12 -3.08 10.05 22.21 0.22 -2.86 16 16 C -0.12 -4.09 9.62 22.35 0.22 -3.87 16 17 C -0.11 -4.27 5.82 -19.82 -0.12 -4.39 16 18 C -0.06 -1.98 5.76 -19.85 -0.11 -2.10 16 19 C -0.08 -2.88 5.24 29.74 0.16 -2.72 16 20 C 0.14 5.74 6.52 86.17 0.56 6.30 16 21 N -0.61 -30.98 2.97 -704.23 -2.09 -33.08 16 22 C -0.26 -14.08 9.69 84.03 0.81 -13.26 16 23 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 24 C -0.05 -2.92 4.99 84.86 0.42 -2.49 16 25 N -0.94 -55.25 11.10 21.65 0.24 -55.01 16 26 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 27 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 30 C 0.22 10.95 4.85 85.63 0.42 11.36 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.05 0.70 7.29 -2.39 -0.02 0.68 16 34 H 0.08 0.91 7.90 -2.39 -0.02 0.89 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 40 H 0.41 8.47 8.46 -92.70 -0.78 7.68 16 41 H 0.07 1.82 6.34 -2.39 -0.02 1.80 16 42 H 0.08 1.84 7.99 -2.38 -0.02 1.82 16 43 H 0.15 2.61 8.03 -2.91 -0.02 2.59 16 44 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 45 H 0.12 3.85 8.05 -2.91 -0.02 3.83 16 46 H 0.08 2.47 6.25 -2.39 -0.01 2.46 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 50 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 51 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 52 H 0.06 3.42 6.34 -2.39 -0.02 3.41 16 Total: -1.00 -68.02 413.58 2.93 -65.09 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.12 Total: 25.71 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.26 Total: -11.54 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.43 Total: -106.82 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.05 Total: -18.90 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.02 2.93 -65.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.630 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds