Wall clock time and date at job start Wed Apr 1 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.52994 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.55466 * 29.32817 * 4 3 2 6 6 C 1.52999 * 117.49946 * 243.62000 * 4 3 2 7 7 C 1.52997 * 60.00252 * 252.51334 * 6 4 3 8 8 H 1.09000 * 117.52410 * 107.47877 * 7 6 4 9 9 C 1.50705 * 117.49786 * 252.51278 * 7 6 4 10 10 O 1.21273 * 120.00035 * 68.61718 * 9 7 6 11 11 N 1.34775 * 119.99408 * 248.61921 * 9 7 6 12 12 C 1.46505 * 119.99530 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47004 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.76408 * 295.75016 * 13 12 11 15 15 C 1.52784 * 109.77260 * 174.99835 * 13 12 11 16 16 C 1.50607 * 110.82269 * 193.01771 * 15 13 12 17 17 C 1.39070 * 117.54960 * 199.59849 * 16 15 13 18 18 C 1.37910 * 120.56406 * 180.45769 * 17 16 15 19 19 C 1.38269 * 119.82705 * 0.02579 * 18 17 16 20 20 C 1.37962 * 119.71124 * 359.76532 * 19 18 17 21 21 C 1.37582 * 122.93570 * 19.67465 * 16 15 13 22 22 C 1.50808 * 122.33608 * 359.25513 * 21 16 15 23 23 N 1.46690 * 109.66397 * 11.08278 * 22 21 16 24 24 C 1.36944 * 121.34366 * 135.68558 * 23 22 21 25 25 H 1.08002 * 119.99660 * 207.89262 * 24 23 22 26 26 C 1.38813 * 120.00185 * 27.90410 * 24 23 22 27 27 N 1.31622 * 119.99755 * 10.95765 * 26 24 23 28 28 Si 1.86797 * 119.99789 * 190.96023 * 26 24 23 29 29 H 1.48500 * 109.47108 * 90.00087 * 28 26 24 30 30 H 1.48500 * 109.46914 * 209.99479 * 28 26 24 31 31 H 1.48500 * 109.47366 * 329.99617 * 28 26 24 32 32 H 1.09000 * 109.47509 * 300.00478 * 1 2 3 33 33 H 1.09005 * 109.46665 * 60.00243 * 1 2 3 34 34 H 1.08995 * 109.47135 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47180 * 239.99942 * 2 1 3 36 36 H 1.08998 * 109.47284 * 119.99948 * 2 1 3 37 37 H 1.08998 * 109.47116 * 59.99903 * 3 2 1 38 38 H 1.09003 * 109.46690 * 299.99760 * 3 2 1 39 39 H 1.08995 * 117.50045 * 145.02111 * 6 4 3 40 40 H 1.09000 * 117.49603 * 0.02562 * 6 4 3 41 41 H 0.96997 * 120.00910 * 0.02562 * 11 9 7 42 42 H 1.08994 * 109.47047 * 59.99976 * 12 11 9 43 43 H 1.08998 * 109.46980 * 299.99487 * 12 11 9 44 44 H 1.08993 * 109.20374 * 313.35522 * 15 13 12 45 45 H 1.09006 * 109.20082 * 72.69166 * 15 13 12 46 46 H 1.07998 * 119.72910 * 0.46686 * 17 16 15 47 47 H 1.07997 * 120.08763 * 180.02562 * 18 17 16 48 48 H 1.07999 * 120.14250 * 179.78894 * 19 18 17 49 49 H 1.08002 * 119.74103 * 180.02562 * 20 19 18 50 50 H 1.08998 * 109.44156 * 251.02335 * 22 21 16 51 51 H 1.08999 * 109.40725 * 131.12221 * 22 21 16 52 52 H 0.96998 * 119.99456 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1175 8 1 3.6513 3.6839 -0.1962 9 6 5.5697 2.8386 -0.8902 10 8 6.0124 1.8261 -1.3898 11 7 6.2341 4.0033 -1.0258 12 6 7.4916 4.0461 -1.7764 13 6 8.0361 5.4760 -1.7781 14 1 7.3485 6.1316 -2.3123 15 6 9.4073 5.5060 -2.4512 16 6 10.1027 6.8164 -2.1912 17 6 11.1400 7.1747 -3.0454 18 6 11.8256 8.3566 -2.8588 19 6 11.4810 9.1940 -1.8139 20 6 10.4495 8.8427 -0.9678 21 6 9.7559 7.6551 -1.1572 22 6 8.6326 7.3368 -0.2025 23 7 8.2014 5.9477 -0.3933 24 6 7.9619 5.1233 0.6737 25 1 8.0890 4.0558 0.5704 26 6 7.5554 5.6597 1.8878 27 7 7.1925 6.9228 1.9607 28 14 7.5237 4.5889 3.4180 29 1 8.8375 4.6689 4.1055 30 1 6.4562 5.0656 4.3337 31 1 7.2520 3.1810 3.0315 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 5.2108 1.5849 1.5356 40 1 3.6504 2.4421 2.0164 41 1 5.8803 4.8130 -0.6258 42 1 7.3135 3.7235 -2.8022 43 1 8.2174 3.3819 -1.3074 44 1 10.0173 4.6925 -2.0587 45 1 9.2821 5.3738 -3.5259 46 1 11.4110 6.5220 -3.8621 47 1 12.6296 8.6275 -3.5271 48 1 12.0168 10.1192 -1.6610 49 1 10.1796 9.4966 -0.1517 50 1 7.7939 8.0064 -0.3930 51 1 8.9790 7.4717 0.8221 52 1 6.9089 7.2977 2.8091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054052906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:11 Heat of formation + Delta-G solvation = 4.578830 kcal Electronic energy + Delta-G solvation = -30158.222052 eV Core-core repulsion = 26315.455787 eV Total energy + Delta-G solvation = -3842.766265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.11907 -40.56113 -38.55075 -37.73642 -35.32964 -34.71469 -34.46024 -32.96297 -31.77450 -30.51294 -28.49351 -27.37040 -27.12382 -24.66315 -24.37802 -22.89899 -22.82680 -22.36366 -21.46345 -20.95087 -20.49982 -18.59204 -17.75343 -17.69654 -17.05910 -16.62169 -16.14669 -16.12985 -16.02726 -15.80809 -15.56281 -15.31507 -15.09800 -14.77235 -14.58713 -14.15144 -14.05052 -13.81676 -13.70716 -13.60394 -13.25517 -13.16877 -13.08414 -12.91443 -12.77849 -12.62004 -12.52002 -12.27097 -12.19322 -12.16395 -11.93907 -11.86354 -11.66446 -11.60972 -11.32099 -11.14372 -10.97950 -10.69104 -10.65309 -9.84090 -9.53412 -9.26617 -8.67212 -7.86428 -5.30710 0.58590 0.63033 1.41087 1.46520 1.51876 1.60774 2.31604 2.48945 2.92026 2.98529 3.32288 3.49355 3.67745 3.81155 3.83830 3.90063 4.10449 4.19609 4.21373 4.22987 4.24962 4.30189 4.39172 4.39439 4.41790 4.51071 4.63885 4.65880 4.71594 4.80252 4.83086 4.88238 4.91626 4.91911 4.94333 5.00755 5.06455 5.19715 5.20975 5.22787 5.27210 5.37262 5.41769 5.42676 5.51690 5.52755 5.62860 5.70270 5.71548 5.74932 6.01871 6.27873 6.35862 6.74816 7.15188 7.37082 7.80608 8.36627 9.20783 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.002909 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.168981 B = 9624.102659 C =10928.230770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.104 4.104 5 H 0.099 0.901 6 C -0.151 4.151 7 C -0.194 4.194 8 H 0.137 0.863 9 C 0.534 3.466 10 O -0.597 6.597 11 N -0.690 5.690 12 C 0.142 3.858 13 C 0.160 3.840 14 H 0.043 0.957 15 C -0.084 4.084 16 C -0.084 4.084 17 C -0.127 4.127 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.109 4.109 22 C 0.224 3.776 23 N -0.599 5.599 24 C -0.230 4.230 25 H 0.060 0.940 26 C -0.029 4.029 27 N -0.927 5.927 28 Si 0.941 3.059 29 H -0.297 1.297 30 H -0.290 1.290 31 H -0.276 1.276 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.412 0.588 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.115 0.885 50 H 0.015 0.985 51 H 0.060 0.940 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 -2.876 -7.646 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.121 4.121 4 C -0.122 4.122 5 H 0.117 0.883 6 C -0.188 4.188 7 C -0.215 4.215 8 H 0.155 0.845 9 C 0.321 3.679 10 O -0.480 6.480 11 N -0.338 5.338 12 C 0.017 3.983 13 C 0.054 3.946 14 H 0.061 0.939 15 C -0.123 4.123 16 C -0.085 4.085 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.110 4.110 22 C 0.099 3.901 23 N -0.323 5.323 24 C -0.360 4.360 25 H 0.078 0.922 26 C -0.225 4.225 27 N -0.573 5.573 28 Si 0.771 3.229 29 H -0.225 1.225 30 H -0.216 1.216 31 H -0.201 1.201 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.248 0.752 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.161 0.839 49 H 0.133 0.867 50 H 0.033 0.967 51 H 0.078 0.922 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.891 -3.496 -7.853 9.436 hybrid contribution 0.159 0.213 1.581 1.603 sum -3.732 -3.283 -6.272 8.003 Atomic orbital electron populations 1.21759 0.94757 1.02106 1.02122 1.21494 0.96537 0.95820 1.02069 1.21249 0.89864 0.98117 1.02911 1.22433 0.95924 0.93983 0.99909 0.88290 1.23094 1.02600 1.02179 0.90964 1.22301 0.97037 0.99907 1.02226 0.84540 1.20055 0.85545 0.82715 0.79553 1.90586 1.70603 1.35155 1.51703 1.45866 1.23228 1.11182 1.53571 1.21205 0.85380 0.96369 0.95306 1.20821 0.94655 0.92757 0.86343 0.93931 1.20825 0.96111 0.94311 1.01102 1.19657 0.97433 0.96194 0.95174 1.21459 0.95619 0.97847 0.99606 1.21328 1.00543 0.94471 0.98523 1.21308 0.97151 1.00648 0.95349 1.21229 0.97317 0.96540 1.00489 1.20762 0.98335 0.95039 0.96863 1.19336 0.90472 0.84867 0.95460 1.44171 1.78037 1.09660 1.00457 1.19063 1.37390 0.89933 0.89636 0.92235 1.25422 0.99669 0.97023 1.00412 1.70080 1.48961 1.13474 1.24805 0.85671 0.76700 0.79192 0.81361 1.22482 1.21578 1.20117 0.92366 0.92481 0.92131 0.92280 0.91961 0.90625 0.90904 0.90583 0.86122 0.75166 0.90640 0.93682 0.91491 0.88649 0.84225 0.83377 0.83940 0.86716 0.96739 0.92185 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.12 -2.15 5.89 30.60 0.18 -1.97 16 3 C -0.08 -1.68 5.50 30.59 0.17 -1.51 16 4 C -0.10 -2.77 5.25 -10.79 -0.06 -2.83 16 5 H 0.10 2.99 7.60 -2.39 -0.02 2.97 16 6 C -0.15 -4.44 9.88 30.59 0.30 -4.14 16 7 C -0.19 -6.02 5.91 -11.54 -0.07 -6.09 16 8 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 9 C 0.53 20.46 7.61 87.66 0.67 21.13 16 10 O -0.60 -26.15 16.26 -3.01 -0.05 -26.20 16 11 N -0.69 -26.55 4.08 -463.05 -1.89 -28.44 16 12 C 0.14 5.27 4.43 86.38 0.38 5.65 16 13 C 0.16 6.05 2.99 44.78 0.13 6.19 16 14 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.08 -2.76 5.21 29.75 0.16 -2.61 16 16 C -0.08 -2.92 5.76 -19.85 -0.11 -3.03 16 17 C -0.13 -3.55 9.59 22.39 0.21 -3.34 16 18 C -0.13 -3.29 10.04 22.20 0.22 -3.07 16 19 C -0.13 -3.47 10.05 22.21 0.22 -3.25 16 20 C -0.14 -4.71 9.62 22.35 0.22 -4.50 16 21 C -0.11 -4.26 5.82 -19.84 -0.12 -4.37 16 22 C 0.22 10.40 4.80 85.63 0.41 10.81 16 23 N -0.60 -27.44 2.86 -680.31 -1.95 -29.38 16 24 C -0.23 -11.53 7.09 84.03 0.60 -10.93 16 25 H 0.06 3.11 6.18 -2.91 -0.02 3.09 16 26 C -0.03 -1.50 5.08 84.86 0.43 -1.07 16 27 N -0.93 -50.23 11.06 21.65 0.24 -49.99 16 28 Si 0.94 43.57 29.57 68.60 2.03 45.60 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 31 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.12 3.02 8.03 -2.39 -0.02 3.00 16 41 H 0.41 16.58 7.48 -92.71 -0.69 15.89 16 42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.04 1.86 7.24 -2.39 -0.02 1.85 16 44 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 45 H 0.10 2.49 8.11 -2.38 -0.02 2.47 16 46 H 0.14 3.07 8.05 -2.91 -0.02 3.05 16 47 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 48 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 49 H 0.11 3.85 8.05 -2.91 -0.02 3.82 16 50 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.06 3.17 6.45 -2.39 -0.02 3.16 16 52 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -61.93 412.69 3.25 -58.69 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.20 Total: 40.08 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.66 Total: -10.36 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.60 Total: -107.81 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.93 3.25 -58.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054052906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.264 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds