Wall clock time and date at job start Wed Apr 1 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47125 * 2 1 4 4 C 1.52996 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.56660 * 29.30503 * 4 3 2 6 6 C 1.53004 * 117.49714 * 243.62543 * 4 3 2 7 7 C 1.52999 * 117.50103 * 175.00079 * 4 3 2 8 8 H 1.08996 * 117.51819 * 0.02562 * 7 4 3 9 9 C 1.50706 * 117.50136 * 214.97584 * 7 4 3 10 10 O 1.21277 * 119.99398 * 359.97438 * 9 7 4 11 11 N 1.34770 * 120.00042 * 179.97438 * 9 7 4 12 12 C 1.46498 * 119.99914 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47215 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.81620 * 64.21228 * 13 12 11 15 15 C 1.52795 * 109.77850 * 184.99465 * 13 12 11 16 16 C 1.50598 * 110.84595 * 167.06883 * 15 13 12 17 17 C 1.38982 * 117.60290 * 160.41813 * 16 15 13 18 18 C 1.37917 * 120.58033 * 179.37983 * 17 16 15 19 19 C 1.38265 * 119.82417 * 0.02790 * 18 17 16 20 20 C 1.37961 * 119.71762 * 0.18878 * 19 18 17 21 21 C 1.37666 * 122.87225 * 340.17887 * 16 15 13 22 22 C 1.50807 * 122.35266 * 0.85110 * 21 16 15 23 23 N 1.46682 * 109.64663 * 348.93157 * 22 21 16 24 24 C 1.36941 * 121.34278 * 224.27533 * 23 22 21 25 25 H 1.08002 * 119.99819 * 151.72790 * 24 23 22 26 26 C 1.38809 * 119.99796 * 331.71616 * 24 23 22 27 27 N 1.31625 * 119.99554 * 163.32789 * 26 24 23 28 28 Si 1.86793 * 120.00439 * 343.33124 * 26 24 23 29 29 H 1.48505 * 109.47062 * 86.73166 * 28 26 24 30 30 H 1.48494 * 109.47438 * 206.73111 * 28 26 24 31 31 H 1.48499 * 109.47179 * 326.73339 * 28 26 24 32 32 H 1.08993 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46946 * 300.00207 * 1 2 3 34 34 H 1.08999 * 109.47294 * 59.99160 * 1 2 3 35 35 H 1.09003 * 109.46723 * 240.00284 * 2 1 3 36 36 H 1.08996 * 109.46868 * 120.00223 * 2 1 3 37 37 H 1.08996 * 109.47529 * 60.00025 * 3 2 1 38 38 H 1.09006 * 109.47119 * 300.00311 * 3 2 1 39 39 H 1.08999 * 117.50218 * 145.02335 * 6 4 3 40 40 H 1.08997 * 117.51943 * 359.97438 * 6 4 3 41 41 H 0.96995 * 120.00115 * 359.97438 * 11 9 7 42 42 H 1.09000 * 109.47260 * 59.98812 * 12 11 9 43 43 H 1.09007 * 109.46798 * 299.99614 * 12 11 9 44 44 H 1.09004 * 109.19604 * 46.71982 * 15 13 12 45 45 H 1.08991 * 109.16673 * 287.40444 * 15 13 12 46 46 H 1.07998 * 119.71497 * 359.40765 * 17 16 15 47 47 H 1.07996 * 120.08664 * 179.97438 * 18 17 16 48 48 H 1.08000 * 120.13840 * 180.21693 * 19 18 17 49 49 H 1.07996 * 119.74319 * 179.97438 * 20 19 18 50 50 H 1.09001 * 109.43521 * 108.97739 * 22 21 16 51 51 H 1.09009 * 109.43653 * 228.89042 * 22 21 16 52 52 H 0.97000 * 119.99578 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0402 0.5851 -0.4822 6 6 4.2769 2.0452 1.2151 7 6 4.2764 2.7944 -0.1190 8 1 3.6515 3.6841 -0.1960 9 6 5.5690 2.8388 -0.8926 10 8 6.0115 1.8264 -1.3925 11 7 6.2331 4.0036 -1.0289 12 6 7.4893 4.0469 -1.7813 13 6 8.0330 5.4770 -1.7845 14 1 8.2848 5.7788 -0.7678 15 6 9.2758 5.5558 -2.6699 16 6 9.6472 6.9889 -2.9459 17 6 10.9464 7.2479 -3.3662 18 6 11.3487 8.5365 -3.6485 19 6 10.4539 9.5817 -3.5123 20 6 9.1649 9.3280 -3.0910 21 6 8.7596 8.0315 -2.8037 22 6 7.3398 7.8250 -2.3392 23 7 7.0240 6.3925 -2.3403 24 6 5.8370 5.9252 -2.8382 25 1 5.7803 4.9299 -3.2538 26 6 4.7068 6.7305 -2.8087 27 7 3.6683 6.4349 -3.5615 28 14 4.6596 8.2336 -1.7007 29 1 5.2488 9.3942 -2.4157 30 1 3.2520 8.5379 -1.3388 31 1 5.4407 7.9639 -0.4669 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5140 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6768 1.9563 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 5.2122 1.5845 1.5331 40 1 3.6523 2.4422 2.0153 41 1 5.8790 4.8134 -0.6293 42 1 7.3098 3.7244 -2.8070 43 1 8.2161 3.3825 -1.3136 44 1 9.0759 5.0490 -3.6140 45 1 10.1060 5.0608 -2.1662 46 1 11.6469 6.4330 -3.4732 47 1 12.3603 8.7288 -3.9741 48 1 10.7625 10.5924 -3.7353 49 1 8.4657 10.1441 -2.9841 50 1 7.2272 8.2205 -1.3298 51 1 6.6586 8.3470 -3.0114 52 1 2.8787 6.9979 -3.5411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054052907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:15 Heat of formation + Delta-G solvation = 7.477752 kcal Electronic energy + Delta-G solvation = -30196.959413 eV Core-core repulsion = 26354.318855 eV Total energy + Delta-G solvation = -3842.640558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.20490 -40.65794 -38.62539 -37.81276 -35.40067 -34.72117 -34.52055 -33.39565 -32.00150 -30.89451 -28.52005 -27.39133 -27.11247 -25.02304 -24.40168 -22.99912 -22.81854 -22.37319 -21.48328 -21.09024 -20.60972 -18.64553 -18.04962 -17.68222 -17.05877 -16.80738 -16.60157 -16.11627 -15.94686 -15.90120 -15.76829 -15.43596 -15.18987 -14.96732 -14.44066 -14.19714 -14.14712 -14.12406 -13.88865 -13.73247 -13.65233 -13.28425 -13.05993 -12.91337 -12.87722 -12.75961 -12.48345 -12.25947 -12.17897 -12.15359 -11.94136 -11.83805 -11.67406 -11.54655 -11.43594 -11.16278 -10.94932 -10.74999 -10.68192 -9.85781 -9.63844 -9.39890 -8.92743 -8.10689 -5.48680 0.51097 0.52487 1.31017 1.39925 1.48491 1.61354 2.35683 2.42506 2.88215 2.89215 3.01025 3.25373 3.66937 3.73655 3.81049 3.90988 3.92978 4.10565 4.15146 4.18963 4.28436 4.30291 4.31406 4.35596 4.38972 4.40941 4.51019 4.55964 4.62903 4.63732 4.77205 4.81095 4.82616 4.84633 4.88991 4.90118 4.93698 5.02115 5.09112 5.15951 5.18014 5.19957 5.34654 5.36988 5.40974 5.51647 5.62084 5.63194 5.65356 5.78126 5.90559 6.18568 6.20915 6.72148 6.86139 7.37344 7.59711 8.01259 9.08204 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.002950 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.929625 B = 9488.456473 C =10725.968116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.118 4.118 5 H 0.097 0.903 6 C -0.121 4.121 7 C -0.206 4.206 8 H 0.118 0.882 9 C 0.537 3.463 10 O -0.598 6.598 11 N -0.691 5.691 12 C 0.141 3.859 13 C 0.163 3.837 14 H 0.063 0.937 15 C -0.086 4.086 16 C -0.077 4.077 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.137 4.137 21 C -0.108 4.108 22 C 0.159 3.841 23 N -0.612 5.612 24 C -0.224 4.224 25 H 0.056 0.944 26 C -0.025 4.025 27 N -0.955 5.955 28 Si 0.935 3.065 29 H -0.282 1.282 30 H -0.315 1.315 31 H -0.253 1.253 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.409 0.591 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.142 0.858 47 H 0.150 0.850 48 H 0.146 0.854 49 H 0.119 0.881 50 H 0.042 0.958 51 H 0.058 0.942 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 -2.086 9.707 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.125 4.125 4 C -0.136 4.136 5 H 0.115 0.885 6 C -0.159 4.159 7 C -0.227 4.227 8 H 0.136 0.864 9 C 0.325 3.675 10 O -0.481 6.481 11 N -0.339 5.339 12 C 0.017 3.983 13 C 0.058 3.942 14 H 0.081 0.919 15 C -0.125 4.125 16 C -0.077 4.077 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.156 4.156 21 C -0.109 4.109 22 C 0.035 3.965 23 N -0.337 5.337 24 C -0.353 4.353 25 H 0.073 0.927 26 C -0.220 4.220 27 N -0.601 5.601 28 Si 0.764 3.236 29 H -0.209 1.209 30 H -0.244 1.244 31 H -0.177 1.177 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.160 0.840 47 H 0.168 0.832 48 H 0.163 0.837 49 H 0.137 0.863 50 H 0.059 0.941 51 H 0.076 0.924 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.814 -2.754 9.315 12.466 hybrid contribution -0.867 1.450 -0.221 1.703 sum 6.947 -1.304 9.094 11.518 Atomic orbital electron populations 1.21773 0.95018 1.02177 1.01916 1.21473 0.96365 0.95525 1.02225 1.21242 0.90770 0.98214 1.02274 1.22408 0.95571 0.94005 1.01666 0.88456 1.23186 1.02934 1.00072 0.89679 1.22254 0.97065 0.99657 1.03771 0.86378 1.20017 0.85116 0.82727 0.79669 1.90582 1.70217 1.35602 1.51728 1.45771 1.24151 1.10548 1.53389 1.21212 0.85382 0.96165 0.95541 1.20902 0.88786 0.88463 0.96089 0.91896 1.20834 0.98258 0.92970 1.00475 1.19618 0.93820 0.94787 0.99469 1.21451 0.94986 0.98225 0.99646 1.21385 1.00656 0.92307 0.99869 1.21325 0.92799 1.00535 0.99596 1.21257 0.97641 0.95661 1.01006 1.20281 0.95995 0.94174 1.00442 1.20259 0.92294 0.85884 0.98091 1.44434 1.16634 1.01456 1.71220 1.18563 0.84935 1.00572 1.31227 0.92663 1.25767 0.95244 1.00830 1.00123 1.69944 1.06985 1.41597 1.41557 0.86181 0.74974 0.81034 0.81385 1.20880 1.24377 1.17674 0.91767 0.91973 0.93435 0.92878 0.90789 0.90073 0.93037 0.88290 0.85277 0.75531 0.94378 0.90016 0.91663 0.87844 0.83981 0.83183 0.83672 0.86297 0.94071 0.92380 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.42 5.89 30.59 0.18 -2.24 16 3 C -0.09 -2.11 5.49 30.59 0.17 -1.94 16 4 C -0.12 -3.34 5.25 -10.79 -0.06 -3.39 16 5 H 0.10 3.12 7.60 -2.39 -0.02 3.10 16 6 C -0.12 -2.93 9.88 30.60 0.30 -2.62 16 7 C -0.21 -6.76 5.91 -11.54 -0.07 -6.83 16 8 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 9 C 0.54 21.42 7.61 87.66 0.67 22.08 16 10 O -0.60 -27.24 16.26 -3.02 -0.05 -27.29 16 11 N -0.69 -26.84 4.09 -463.06 -1.89 -28.74 16 12 C 0.14 5.22 4.43 86.38 0.38 5.60 16 13 C 0.16 5.75 2.99 44.80 0.13 5.88 16 14 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.09 -2.64 5.21 29.75 0.15 -2.48 16 16 C -0.08 -2.43 5.76 -19.85 -0.11 -2.54 16 17 C -0.13 -3.15 9.59 22.37 0.21 -2.93 16 18 C -0.12 -2.78 10.05 22.20 0.22 -2.56 16 19 C -0.12 -3.03 10.05 22.21 0.22 -2.81 16 20 C -0.14 -4.20 9.62 22.35 0.22 -3.98 16 21 C -0.11 -3.82 5.82 -19.82 -0.12 -3.93 16 22 C 0.16 6.58 3.97 85.63 0.34 6.92 16 23 N -0.61 -26.62 2.63 -680.50 -1.79 -28.40 16 24 C -0.22 -11.68 7.51 84.03 0.63 -11.05 16 25 H 0.06 3.30 6.40 -2.91 -0.02 3.28 16 26 C -0.02 -1.35 5.30 84.86 0.45 -0.91 16 27 N -0.95 -57.91 13.97 21.65 0.30 -57.60 16 28 Si 0.93 43.59 24.16 68.60 1.66 45.25 16 29 H -0.28 -12.80 6.47 99.48 0.64 -12.15 16 30 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 31 H -0.25 -10.84 6.57 99.48 0.65 -10.18 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.66 7.88 -2.39 -0.02 1.64 16 38 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.13 2.36 8.03 -2.39 -0.02 2.34 16 41 H 0.41 16.01 7.48 -92.71 -0.69 15.32 16 42 H 0.04 1.65 7.24 -2.39 -0.02 1.63 16 43 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 44 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 45 H 0.10 2.41 8.11 -2.39 -0.02 2.39 16 46 H 0.14 2.77 8.05 -2.91 -0.02 2.75 16 47 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 48 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 49 H 0.12 3.44 8.05 -2.91 -0.02 3.42 16 50 H 0.04 1.67 6.35 -2.39 -0.02 1.65 16 51 H 0.06 2.69 5.11 -2.38 -0.01 2.68 16 52 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -69.03 405.70 2.97 -66.06 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: 0.09 Total: 42.41 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.65 Total: -11.69 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -3.38 Total: -114.75 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.66 Total: 45.25 kcal Total: -69.03 2.97 -66.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054052907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.542 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds