Wall clock time and date at job start Wed Apr 1 2020 02:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 C 1.53004 * 109.46907 * 119.99918 * 2 1 3 5 5 H 1.08998 * 109.46944 * 55.99791 * 4 2 1 6 6 F 1.39903 * 109.46783 * 295.99605 * 4 2 1 7 7 C 1.50699 * 109.46875 * 175.99607 * 4 2 1 8 8 O 1.21284 * 119.99693 * 98.78604 * 7 4 2 9 9 N 1.34775 * 120.00089 * 278.78034 * 7 4 2 10 10 C 1.46930 * 120.63078 * 4.48869 * 9 7 4 11 11 C 1.52761 * 109.00657 * 233.58175 * 10 9 7 12 12 C 1.53039 * 109.38116 * 305.58862 * 11 10 9 13 13 C 1.53006 * 109.45498 * 181.26203 * 12 11 10 14 14 H 1.08996 * 109.87299 * 298.92041 * 13 12 11 15 15 O 1.43744 * 109.87384 * 177.76019 * 13 12 11 16 16 C 1.44381 * 106.97376 * 214.06132 * 15 13 12 17 17 C 1.54992 * 103.49348 * 40.06348 * 16 15 13 18 18 C 1.54094 * 109.87959 * 59.93255 * 13 12 11 19 19 H 1.09000 * 110.49217 * 2.77545 * 18 13 12 20 20 N 1.46499 * 110.48780 * 240.25929 * 18 13 12 21 21 C 1.36942 * 120.00173 * 154.99854 * 20 18 13 22 22 H 1.07994 * 120.00083 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99640 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00613 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99764 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47195 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47137 * 120.00001 * 25 23 21 28 28 H 1.48493 * 109.47523 * 240.00071 * 25 23 21 29 29 C 1.53036 * 109.54179 * 61.24305 * 12 11 10 30 30 C 1.46924 * 120.63184 * 184.76364 * 9 7 4 31 31 H 1.08998 * 109.46900 * 300.00171 * 1 2 3 32 32 H 1.09005 * 109.46995 * 60.00365 * 1 2 3 33 33 H 1.09005 * 109.46809 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46900 * 239.99829 * 2 1 3 35 35 H 1.08998 * 109.47191 * 176.57789 * 3 2 1 36 36 H 1.09001 * 109.47312 * 296.57549 * 3 2 1 37 37 H 1.09001 * 109.47477 * 56.57227 * 3 2 1 38 38 H 1.08999 * 109.58620 * 353.41432 * 10 9 7 39 39 H 1.08994 * 109.58846 * 113.84007 * 10 9 7 40 40 H 1.08996 * 109.56140 * 185.54965 * 11 10 9 41 41 H 1.09000 * 109.36065 * 65.49849 * 11 10 9 42 42 H 1.08998 * 109.45963 * 301.21851 * 12 11 10 43 43 H 1.09003 * 110.61950 * 281.56024 * 16 15 13 44 44 H 1.09005 * 110.61495 * 158.56707 * 16 15 13 45 45 H 1.08993 * 110.91069 * 204.78146 * 17 16 15 46 46 H 1.09003 * 110.93741 * 81.18221 * 17 16 15 47 47 H 0.97006 * 120.00194 * 335.00032 * 20 18 13 48 48 H 0.97003 * 120.00462 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.50092 * 178.68466 * 29 12 11 50 50 H 1.09003 * 109.49831 * 58.58165 * 29 12 11 51 51 H 1.08999 * 109.58921 * 246.16041 * 30 9 7 52 52 H 1.09007 * 109.58275 * 6.58391 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6193 -1.7261 1.2859 6 9 1.6504 -0.0106 2.3897 7 6 3.5438 -0.8078 1.2007 8 8 4.2173 -0.0106 1.8187 9 7 4.1401 -1.7709 0.4705 10 6 3.3420 -2.6823 -0.3609 11 6 3.6962 -4.1238 0.0001 12 6 5.2087 -4.3214 -0.1237 13 6 5.5618 -5.7729 0.2070 14 1 5.2677 -6.0017 1.2313 15 8 6.9745 -5.9818 0.0428 16 6 7.1480 -7.3334 -0.4344 17 6 5.9888 -7.5108 -1.4478 18 6 4.8417 -6.7229 -0.7695 19 1 4.2794 -6.1543 -1.5102 20 7 3.9536 -7.6313 -0.0400 21 6 2.8712 -8.1842 -0.6710 22 1 2.6726 -7.9508 -1.7066 23 6 2.0295 -9.0445 0.0205 24 7 2.2712 -9.3285 1.2826 25 14 0.5526 -9.7981 -0.8401 26 1 0.5029 -9.3224 -2.2460 27 1 0.6717 -11.2782 -0.8228 28 1 -0.6905 -9.3933 -0.1359 29 6 5.9285 -3.3868 0.8512 30 6 5.6001 -1.9334 0.4955 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 3.1283 1.4431 0.0613 36 1 1.7277 1.9383 -0.9191 37 1 1.6275 1.9738 0.8577 38 1 2.2815 -2.5109 -0.1765 39 1 3.5651 -2.5067 -1.4132 40 1 3.1834 -4.8062 -0.6776 41 1 3.3855 -4.3264 1.0250 42 1 5.5224 -4.0947 -1.1427 43 1 7.0532 -8.0452 0.3857 44 1 8.1122 -7.4444 -0.9307 45 1 5.7260 -8.5628 -1.5580 46 1 6.2443 -7.0724 -2.4125 47 1 4.1322 -7.8413 0.8901 48 1 1.6828 -9.9294 1.7659 49 1 7.0046 -3.5447 0.7792 50 1 5.5968 -3.5963 1.8682 51 1 6.0111 -1.6954 -0.4856 52 1 6.0290 -1.2679 1.2448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071079093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:15 Heat of formation + Delta-G solvation = -150.432038 kcal Electronic energy + Delta-G solvation = -32034.753900 eV Core-core repulsion = 27754.496635 eV Total energy + Delta-G solvation = -4280.257265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.93679 -41.50975 -40.54008 -38.29090 -36.62308 -36.19025 -34.48831 -33.41769 -32.23782 -30.86239 -29.70136 -28.54276 -28.14364 -26.13730 -24.93059 -24.31056 -23.26524 -22.14480 -21.37746 -21.19185 -20.26067 -19.16412 -18.69642 -17.83462 -17.32678 -17.27740 -16.92211 -16.45033 -16.21888 -16.08302 -15.95317 -15.55867 -15.15515 -15.08791 -14.77575 -14.59662 -14.53167 -14.28890 -14.02610 -13.96525 -13.75976 -13.55747 -13.35731 -13.19491 -13.00377 -12.96403 -12.81432 -12.56989 -12.30027 -12.24975 -12.15660 -12.15187 -12.03241 -11.95629 -11.91865 -11.69320 -11.55281 -11.50033 -11.18481 -10.90075 -10.74739 -10.55582 -9.76831 -8.99814 -7.91799 -5.20785 1.29913 1.50099 1.51647 1.60420 1.75132 2.57561 2.92995 3.11982 3.36518 3.41165 3.57411 3.61397 3.66691 3.79056 3.92517 4.02568 4.07296 4.10875 4.14736 4.17959 4.26305 4.31161 4.35258 4.41113 4.45699 4.52183 4.56090 4.63988 4.75684 4.77979 4.79245 4.85948 4.87440 4.90242 4.95702 4.97279 5.05670 5.07594 5.11277 5.19788 5.26725 5.29818 5.36723 5.37464 5.45758 5.51457 5.56651 5.99839 6.18804 6.29754 6.90724 7.35644 8.08603 8.31812 9.31676 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003414 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.473306 B = 8199.567477 C =10218.328839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.074 3.926 5 H 0.127 0.873 6 F -0.202 7.202 7 C 0.492 3.508 8 O -0.571 6.571 9 N -0.599 5.599 10 C 0.105 3.895 11 C -0.127 4.127 12 C -0.068 4.068 13 C 0.081 3.919 14 H 0.040 0.960 15 O -0.383 6.383 16 C 0.052 3.948 17 C -0.176 4.176 18 C 0.148 3.852 19 H 0.077 0.923 20 N -0.726 5.726 21 C -0.230 4.230 22 H 0.082 0.918 23 C -0.072 4.072 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.261 1.261 27 H -0.301 1.301 28 H -0.297 1.297 29 C -0.116 4.116 30 C 0.116 3.884 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.040 0.960 44 H 0.111 0.889 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.369 0.631 48 H 0.248 0.752 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.093 0.907 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 17.089 -8.539 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.035 3.965 5 H 0.145 0.855 6 F -0.183 7.183 7 C 0.280 3.720 8 O -0.450 6.450 9 N -0.332 5.332 10 C -0.017 4.017 11 C -0.165 4.165 12 C -0.087 4.087 13 C 0.022 3.978 14 H 0.058 0.942 15 O -0.302 6.302 16 C -0.025 4.025 17 C -0.216 4.216 18 C 0.039 3.961 19 H 0.095 0.905 20 N -0.365 5.365 21 C -0.362 4.362 22 H 0.100 0.900 23 C -0.264 4.264 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.185 1.185 27 H -0.229 1.229 28 H -0.224 1.224 29 C -0.155 4.155 30 C -0.006 4.006 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.058 0.942 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.201 0.799 48 H 0.057 0.943 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.112 0.888 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.636 17.654 -8.297 19.684 hybrid contribution -0.736 -1.323 0.874 1.748 sum 1.901 16.331 -7.424 18.039 Atomic orbital electron populations 1.21857 0.91993 1.03433 1.03186 1.21762 0.98647 0.97266 0.95364 1.21815 1.00326 0.95484 1.03001 1.21923 0.91080 0.98348 0.85146 0.85527 1.92821 1.91235 1.81150 1.53105 1.21313 0.91291 0.80749 0.78660 1.90701 1.66477 1.42061 1.45778 1.48225 1.08263 1.31565 1.45107 1.22050 0.96280 0.87358 0.95978 1.21830 0.95391 0.96763 1.02493 1.21129 0.95153 0.91620 1.00817 1.22997 0.81059 0.96000 0.97732 0.94169 1.88764 1.23187 1.30780 1.87496 1.23510 0.99898 0.83342 0.95720 1.23754 0.96862 1.01641 0.99350 1.21789 0.90813 0.90187 0.93306 0.90517 1.42615 1.28720 1.53526 1.11657 1.19619 1.01386 1.19626 0.95526 0.89986 1.25466 1.02409 1.01889 0.96633 1.69822 1.40858 1.41188 1.10268 0.85187 0.79500 0.77358 0.78403 1.18513 1.22910 1.22413 1.21816 1.01566 0.93608 0.98475 1.21666 0.79178 0.96456 1.03326 0.92917 0.89966 0.90983 0.86743 0.94133 0.89796 0.93087 0.87761 0.87610 0.89551 0.93339 0.88616 0.94201 0.87108 0.91950 0.89442 0.79888 0.94270 0.89586 0.93668 0.88843 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.10 71.99 0.66 -1.13 16 2 C -0.11 -1.65 2.50 -10.79 -0.03 -1.68 16 3 C -0.15 -2.57 8.84 71.98 0.64 -1.94 16 4 C 0.07 1.53 2.55 29.85 0.08 1.61 16 5 H 0.13 2.12 6.69 -2.39 -0.02 2.11 16 6 F -0.20 -5.49 15.80 44.97 0.71 -4.78 16 7 C 0.49 12.56 6.02 87.66 0.53 13.09 16 8 O -0.57 -19.35 15.71 -3.04 -0.05 -19.39 16 9 N -0.60 -12.60 2.98 -819.73 -2.44 -15.04 16 10 C 0.10 1.71 5.57 86.22 0.48 2.19 16 11 C -0.13 -2.93 5.11 30.53 0.16 -2.77 16 12 C -0.07 -1.64 1.81 -10.77 -0.02 -1.65 16 13 C 0.08 2.51 2.76 30.97 0.09 2.60 16 14 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16 15 O -0.38 -11.74 10.61 -148.98 -1.58 -13.32 16 16 C 0.05 1.50 7.72 72.66 0.56 2.06 16 17 C -0.18 -5.46 6.88 31.90 0.22 -5.24 16 18 C 0.15 5.11 2.70 45.98 0.12 5.23 16 19 H 0.08 2.48 6.43 -2.39 -0.02 2.47 16 20 N -0.73 -32.94 5.13 -318.26 -1.63 -34.57 16 21 C -0.23 -11.49 9.96 84.03 0.84 -10.65 16 22 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 24 N -0.97 -56.81 13.06 21.65 0.28 -56.53 16 25 Si 0.97 43.30 29.55 68.60 2.03 45.32 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 27 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 29 C -0.12 -2.72 5.25 30.67 0.16 -2.56 16 30 C 0.12 2.44 6.42 86.36 0.55 3.00 16 31 H 0.05 0.77 7.91 -2.39 -0.02 0.75 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.11 1.21 6.99 -2.39 -0.02 1.19 16 35 H 0.04 0.86 6.90 -2.39 -0.02 0.85 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.01 7.81 -2.39 -0.02 0.99 16 38 H 0.10 1.33 5.02 -2.39 -0.01 1.32 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 2.19 6.49 -2.39 -0.02 2.17 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.37 18.87 7.54 -92.70 -0.70 18.17 16 48 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 49 H 0.09 1.99 7.72 -2.39 -0.02 1.97 16 50 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.08 1.87 7.03 -2.38 -0.02 1.86 16 Total: -1.00 -67.84 400.82 3.03 -64.82 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.21 Total: 34.73 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.49 Total: -1.23 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.79 Total: -106.15 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.63 Total: -32.71 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.71 Total: -4.78 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -67.84 3.03 -64.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071079093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.615 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds