Wall clock time and date at job start Wed Apr 1 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 C 1.53004 * 109.47336 * 120.00346 * 2 1 3 5 5 H 1.08998 * 109.47202 * 297.67166 * 4 2 1 6 6 C 1.50701 * 109.47182 * 177.67148 * 4 2 1 7 7 O 1.21282 * 119.99601 * 326.40452 * 6 4 2 8 8 N 1.34765 * 119.99968 * 146.40227 * 6 4 2 9 9 C 1.47889 * 134.34297 * 185.19525 * 8 6 4 10 10 C 1.52372 * 85.59160 * 156.53646 * 9 8 6 11 11 C 1.47898 * 134.34329 * 5.22853 * 8 6 4 12 12 C 1.53652 * 116.39007 * 141.36364 * 10 9 8 13 13 C 1.54598 * 102.73651 * 95.48625 * 12 10 9 14 14 N 1.47134 * 107.36281 * 20.75187 * 13 12 10 15 15 C 1.36942 * 125.58651 * 180.66559 * 14 13 12 16 16 H 1.07999 * 120.00275 * 173.47761 * 15 14 13 17 17 C 1.38809 * 119.99944 * 353.48053 * 15 14 13 18 18 N 1.31619 * 120.00035 * 8.12250 * 17 15 14 19 19 Si 1.86798 * 120.00122 * 188.11834 * 17 15 14 20 20 H 1.48500 * 109.47222 * 94.96951 * 19 17 15 21 21 H 1.48504 * 109.47411 * 214.97101 * 19 17 15 22 22 H 1.48500 * 109.46954 * 334.97262 * 19 17 15 23 23 C 1.47718 * 108.82721 * 0.92922 * 14 13 12 24 24 C 1.50699 * 109.46923 * 57.67362 * 4 2 1 25 25 C 1.38231 * 120.00383 * 59.72270 * 24 4 2 26 26 C 1.38234 * 120.00314 * 179.80934 * 25 24 4 27 27 C 1.38235 * 119.99817 * 0.39984 * 26 25 24 28 28 C 1.38241 * 119.99931 * 359.85782 * 27 26 25 29 29 C 1.38228 * 119.99977 * 359.95235 * 28 27 26 30 30 H 1.09008 * 109.46747 * 299.99370 * 1 2 3 31 31 H 1.09003 * 109.47293 * 59.99539 * 1 2 3 32 32 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46655 * 240.00482 * 2 1 3 34 34 H 1.09001 * 109.47364 * 185.73112 * 3 2 1 35 35 H 1.08998 * 109.47450 * 305.73652 * 3 2 1 36 36 H 1.09001 * 109.47131 * 65.73542 * 3 2 1 37 37 H 1.09002 * 113.85158 * 42.37131 * 9 8 6 38 38 H 1.09005 * 113.85857 * 270.70202 * 9 8 6 39 39 H 1.08992 * 113.85454 * 89.29756 * 11 8 6 40 40 H 1.09000 * 113.84722 * 317.62634 * 11 8 6 41 41 H 1.09005 * 110.76068 * 337.17108 * 12 10 9 42 42 H 1.09000 * 110.91887 * 213.87393 * 12 10 9 43 43 H 1.09006 * 109.86357 * 261.31003 * 13 12 10 44 44 H 1.09001 * 109.98245 * 140.26345 * 13 12 10 45 45 H 0.97003 * 120.00263 * 180.02562 * 18 17 15 46 46 H 1.09006 * 110.39709 * 96.33388 * 23 14 13 47 47 H 1.09000 * 110.40390 * 218.74200 * 23 14 13 48 48 H 1.08005 * 120.00083 * 0.02562 * 25 24 4 49 49 H 1.08002 * 120.00253 * 180.23884 * 26 25 24 50 50 H 1.08001 * 120.00198 * 179.83261 * 27 26 25 51 51 H 1.07994 * 119.99817 * 179.97438 * 28 27 26 52 52 H 1.08001 * 119.99996 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7112 -0.1840 2.1387 6 6 3.5459 -0.7715 1.2206 7 8 4.1293 -0.8713 0.1620 8 7 4.2443 -0.7054 2.3713 9 6 5.6832 -0.6296 2.7043 10 6 5.2261 -0.0058 4.0173 11 6 3.8767 -0.6804 3.8037 12 6 6.0042 -0.4179 5.2765 13 6 7.0417 0.7188 5.4233 14 7 6.5333 1.8770 4.6716 15 6 7.1674 3.0839 4.5425 16 1 6.7639 3.8381 3.8832 17 6 8.3287 3.3380 5.2592 18 7 8.9089 2.3702 5.9368 19 14 9.0682 5.0533 5.2620 20 1 8.5904 5.7965 6.4556 21 1 10.5493 4.9539 5.3009 22 1 8.6526 5.7735 4.0315 23 6 5.2240 1.5267 4.0842 24 6 1.4912 -2.1245 1.2783 25 6 1.7719 -2.9981 0.2444 26 6 1.2717 -4.2865 0.2730 27 6 0.4839 -4.6986 1.3315 28 6 0.1987 -3.8233 2.3628 29 6 0.7022 -2.5363 2.3361 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1252 1.4442 -0.1026 35 1 1.5953 1.9852 -0.8341 36 1 1.7629 1.9258 0.9369 37 1 6.2480 0.0503 2.0664 38 1 6.1606 -1.6025 2.8212 39 1 3.8014 -1.6689 4.2567 40 1 3.0235 -0.0405 4.0286 41 1 6.5004 -1.3770 5.1275 42 1 5.3469 -0.4557 6.1452 43 1 7.9997 0.4014 5.0115 44 1 7.1595 0.9822 6.4745 45 1 9.7202 2.5477 6.4379 46 1 4.4144 1.8779 4.7240 47 1 5.1304 1.9506 3.0844 48 1 2.3850 -2.6752 -0.5840 49 1 1.4942 -4.9702 -0.5328 50 1 0.0908 -5.7044 1.3526 51 1 -0.4171 -4.1452 3.1895 52 1 0.4797 -1.8526 3.1420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073016178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:20 Heat of formation + Delta-G solvation = 42.046537 kcal Electronic energy + Delta-G solvation = -30793.496525 eV Core-core repulsion = 26952.354982 eV Total energy + Delta-G solvation = -3841.141543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.85850 -39.72750 -38.21460 -35.92106 -35.47631 -32.28565 -31.72557 -31.07098 -29.76065 -28.63952 -27.45775 -26.98970 -26.01119 -25.58970 -23.58236 -22.89135 -21.94676 -20.56115 -20.23408 -18.93297 -18.23488 -17.19515 -17.07443 -16.69203 -15.92767 -15.70996 -15.16707 -14.96503 -14.81677 -14.47657 -14.34206 -14.07159 -13.76069 -13.60054 -13.37960 -13.08211 -12.74568 -12.65040 -12.56778 -12.43167 -12.22715 -12.16183 -11.87685 -11.74823 -11.65645 -11.31098 -11.15760 -11.10935 -10.95673 -10.85981 -10.77410 -10.68460 -10.41222 -10.21174 -10.08704 -9.85377 -9.69638 -9.52289 -9.10248 -8.80070 -8.57774 -8.49949 -6.84370 -5.74091 -3.06060 1.11600 1.22026 2.74842 2.93460 3.40101 3.45763 3.47446 3.58836 4.35753 4.46446 4.48347 4.62740 4.68929 4.76202 4.82199 4.90872 4.96236 5.01509 5.16169 5.21703 5.24893 5.35139 5.43026 5.47326 5.51378 5.52837 5.56283 5.58109 5.69785 5.71019 5.71801 5.77453 5.83927 5.87164 5.93461 5.98842 6.06216 6.17454 6.20927 6.21986 6.24724 6.27928 6.33518 6.44313 6.46508 6.51082 6.65760 6.70512 6.79965 7.53950 7.60651 7.81291 7.87663 8.23993 8.29225 9.20422 9.80544 10.46465 11.38067 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002748 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.011464 B =10185.104051 C =11020.567242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.058 4.058 5 H 0.094 0.906 6 C 0.546 3.454 7 O -0.543 6.543 8 N -0.638 5.638 9 C 0.130 3.870 10 C -0.104 4.104 11 C 0.115 3.885 12 C -0.131 4.131 13 C 0.177 3.823 14 N -0.604 5.604 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.163 3.837 24 C -0.068 4.068 25 C -0.105 4.105 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.111 4.111 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.252 0.748 46 H 0.024 0.976 47 H 0.039 0.961 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.290 -12.496 -7.038 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.080 4.080 5 H 0.112 0.888 6 C 0.335 3.665 7 O -0.421 6.421 8 N -0.372 5.372 9 C 0.008 3.992 10 C -0.105 4.105 11 C -0.008 4.008 12 C -0.170 4.170 13 C 0.053 3.947 14 N -0.331 5.331 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.037 3.963 24 C -0.068 4.068 25 C -0.123 4.123 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.129 4.129 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.145 0.855 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.876 -12.438 -7.722 23.888 hybrid contribution 0.471 0.784 0.198 0.936 sum -18.405 -11.654 -7.524 23.047 Atomic orbital electron populations 1.21847 0.94607 1.01930 1.01821 1.20984 0.95601 0.96245 0.96531 1.21882 1.02021 0.95117 1.01816 1.20360 0.91980 0.94173 1.01439 0.88763 1.19985 0.88604 0.75430 0.82501 1.90670 1.71374 1.50407 1.29643 1.50251 1.09345 1.72345 1.05284 1.22943 0.82223 1.00092 0.93921 1.22474 0.94201 0.98426 0.95427 1.23074 0.98535 1.00276 0.78946 1.22658 0.98937 1.00122 0.95280 1.21219 0.92963 0.83686 0.96855 1.44542 1.17037 1.11809 1.59680 1.19037 1.05471 0.89965 1.21237 0.90496 1.24807 0.98018 0.97771 0.99623 1.69976 1.20546 1.29937 1.36155 0.86141 0.78224 0.84005 0.77685 1.21618 1.21789 1.20636 1.21024 0.89785 0.88864 0.96647 1.19417 0.98069 0.94158 0.95190 1.21161 0.99134 0.93443 0.98572 1.21148 0.97972 0.96004 0.98617 1.21161 0.98804 0.99592 0.94519 1.21104 1.00274 0.93735 0.98726 1.21055 0.97736 0.96377 0.97750 0.92634 0.92442 0.92437 0.89901 0.92001 0.92311 0.92645 0.89656 0.90095 0.89652 0.90150 0.91812 0.91712 0.93879 0.93509 0.93752 0.95829 0.94279 0.85504 0.86111 0.86237 0.86029 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.91 37.16 0.33 -0.96 16 2 C -0.07 -0.83 1.99 -90.62 -0.18 -1.01 16 3 C -0.15 -1.75 8.86 37.16 0.33 -1.42 16 4 C -0.06 -0.68 1.81 -92.92 -0.17 -0.85 16 5 H 0.09 0.99 7.30 -51.93 -0.38 0.61 16 6 C 0.55 8.26 5.83 -10.99 -0.06 8.19 16 7 O -0.54 -9.97 16.01 5.56 0.09 -9.89 16 8 N -0.64 -9.43 3.62 -186.89 -0.68 -10.11 16 9 C 0.13 2.11 8.15 -3.60 -0.03 2.08 16 10 C -0.10 -1.66 0.99 -154.85 -0.15 -1.81 16 11 C 0.11 1.44 7.80 -3.60 -0.03 1.41 16 12 C -0.13 -2.21 6.36 -25.55 -0.16 -2.37 16 13 C 0.18 4.10 5.40 -2.86 -0.02 4.08 16 14 N -0.60 -14.93 3.41 -170.50 -0.58 -15.51 16 15 C -0.23 -6.30 10.26 -15.06 -0.15 -6.45 16 16 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 17 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 18 N -0.92 -26.59 10.36 55.49 0.58 -26.01 16 19 Si 0.91 22.00 29.56 -169.99 -5.03 16.98 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.16 3.22 6.63 -3.17 -0.02 3.20 16 24 C -0.07 -0.74 3.40 -104.62 -0.36 -1.10 16 25 C -0.11 -1.19 8.84 -39.59 -0.35 -1.54 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 29 C -0.11 -1.04 9.67 -39.58 -0.38 -1.42 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 7.15 -51.93 -0.37 0.15 16 33 H 0.08 1.02 7.09 -51.93 -0.37 0.65 16 34 H 0.06 0.87 7.13 -51.93 -0.37 0.50 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.58 8.12 -51.93 -0.42 1.16 16 38 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.88 7.84 -51.93 -0.41 0.47 16 41 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 44 H 0.05 1.21 7.35 -51.93 -0.38 0.83 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 48 H 0.13 1.57 7.17 -52.48 -0.38 1.19 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 50 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 52 H 0.12 0.94 7.95 -52.49 -0.42 0.53 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -31.79 410.88 -11.03 -42.82 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.91 Total: 0.19 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.69 Total: -4.66 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.68 Total: -51.63 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.79 -11.03 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073016178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.865 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds